"""RNN dms (delayed-match-to-sample).""" from math import floor import numpy as np import torch import matplotlib.pyplot as plt from .modules import loss_mse from .ranktwo import plot_field, plot_field_noscalings # task constants deltaT = 20.0 tau = 100 alpha = deltaT / tau std_default = 3e-2 fixation_duration_min = 100 fixation_duration_max = 500 stimulus1_duration_min = 500 stimulus1_duration_max = 500 delay_duration_min = 500 delay_duration_max = 3000 stimulus2_duration_min = 500 stimulus2_duration_max = 500 decision_duration = 1000 # Defining some global variables, whoses values can also be set in setup min_fixation_duration_discrete = floor(fixation_duration_min / deltaT) max_fixation_duration_discrete = floor(fixation_duration_max / deltaT) min_stimulus1_duration_discrete = floor(stimulus1_duration_min / deltaT) max_stimulus1_duration_discrete = floor(stimulus1_duration_max / deltaT) min_stimulus2_duration_discrete = floor(stimulus2_duration_min / deltaT) max_stimulus2_duration_discrete = floor(stimulus2_duration_max / deltaT) decision_duration_discrete = floor(decision_duration / deltaT) min_delay_duration_discrete = floor(delay_duration_min / deltaT) max_delay_duration_discrete = floor(delay_duration_max / deltaT) total_duration = ( max_fixation_duration_discrete + max_stimulus1_duration_discrete + max_delay_duration_discrete + max_stimulus2_duration_discrete + decision_duration_discrete ) def setup(): global min_fixation_duration_discrete global max_fixation_duration_discrete global min_stimulus1_duration_discrete global max_stimulus1_duration_discrete global min_stimulus2_duration_discrete global max_stimulus2_duration_discrete global decision_duration_discrete global min_delay_duration_discrete global max_delay_duration_discrete global total_duration min_fixation_duration_discrete = floor(fixation_duration_min / deltaT) max_fixation_duration_discrete = floor(fixation_duration_max / deltaT) min_stimulus1_duration_discrete = floor(stimulus1_duration_min / deltaT) max_stimulus1_duration_discrete = floor(stimulus1_duration_max / deltaT) min_stimulus2_duration_discrete = floor(stimulus2_duration_min / deltaT) max_stimulus2_duration_discrete = floor(stimulus2_duration_max / deltaT) decision_duration_discrete = floor(decision_duration / deltaT) min_delay_duration_discrete = floor(delay_duration_min / deltaT) max_delay_duration_discrete = floor(delay_duration_max / deltaT) total_duration = ( max_fixation_duration_discrete + max_stimulus1_duration_discrete + max_delay_duration_discrete + max_stimulus2_duration_discrete + decision_duration_discrete ) def generate_dms_data( num_trials, type=None, gain=1.0, fraction_validation_trials=0.2, fraction_catch_trials=0.0, std=std_default, ): x = std * torch.randn(num_trials, total_duration, 2) y = torch.zeros(num_trials, total_duration, 1) mask = torch.zeros(num_trials, total_duration, 1) types = ["A-A", "A-B", "B-A", "B-B"] for i in range(num_trials): if np.random.rand() > fraction_catch_trials: if type is None: cur_type = types[int(np.random.rand() * 4)] else: cur_type = type if cur_type == "A-A": input1 = gain input2 = gain choice = 1 elif cur_type == "A-B": input1 = gain input2 = 0 choice = -1 elif cur_type == "B-A": input1 = 0 input2 = gain choice = -1 elif cur_type == "B-B": input1 = 0 input2 = 0 choice = 1 # Sample durations delay_duration = np.random.uniform(delay_duration_min, delay_duration_max) delay_duration_discrete = floor(delay_duration / deltaT) fixation_duration = np.random.uniform( min_fixation_duration_discrete, max_fixation_duration_discrete ) fixation_duration_discrete = floor(fixation_duration / deltaT) stimulus1_duration = np.random.uniform(stimulus1_duration_min, stimulus1_duration_max) stimulus1_duration_discrete = floor(stimulus1_duration / deltaT) stimulus2_duration = np.random.uniform(stimulus2_duration_min, stimulus2_duration_max) stimulus2_duration_discrete = floor(stimulus2_duration / deltaT) decision_time_discrete = ( fixation_duration_discrete + stimulus1_duration_discrete + delay_duration_discrete + stimulus2_duration_discrete ) stim1_begin = fixation_duration_discrete stim1_end = stim1_begin + stimulus1_duration_discrete stim2_begin = stim1_end + delay_duration_discrete stim2_end = stim2_begin + stimulus2_duration_discrete x[i, stim1_begin:stim1_end, 0] += input1 x[i, stim1_begin:stim1_end, 1] += 1 - input1 x[i, stim2_begin:stim2_end, 0] += input2 x[i, stim2_begin:stim2_end, 1] += 1 - input2 y[ i, decision_time_discrete : decision_time_discrete + decision_duration_discrete ] = choice mask[ i, decision_time_discrete : decision_time_discrete + decision_duration_discrete ] = 1 # Split split_at = x.shape[0] - floor(x.shape[0] * fraction_validation_trials) (x_train, x_val) = x[:split_at], x[split_at:] (y_train, y_val) = y[:split_at], y[split_at:] (mask_train, mask_val) = mask[:split_at], mask[split_at:] return x_train, y_train, mask_train, x_val, y_val, mask_val def accuracy_dms(output, targets, mask): good_trials = (targets != 0).any(dim=1).squeeze() # eliminates catch trials mask_bool = mask[good_trials, :, 0] == 1 targets_filtered = torch.stack( targets[good_trials].squeeze()[mask_bool].chunk(good_trials.sum()) ) target_decisions = torch.sign(targets_filtered.mean(dim=1)) decisions_filtered = torch.stack( output[good_trials].squeeze()[mask_bool].chunk(good_trials.sum()) ) decisions = torch.sign(decisions_filtered.mean(dim=1)) return (target_decisions == decisions).type(torch.float32).mean() def map_device(tensors, net): """ Maps a list of tensors to the device used by the network net :param tensors: list of tensors :param net: nn.Module :return: list of tensors """ if net.wi.device != torch.device("cpu"): new_tensors = [] for tensor in tensors: new_tensors.append(tensor.to(device=net.wi.device)) return new_tensors else: return tensors def test_dms(net, x, y, mask): x, y, mask = map_device([x, y, mask], net) with torch.no_grad(): output, _ = net(x) loss = loss_mse(output, y, mask).item() acc = accuracy_dms(output, y, mask).item() return loss, acc def confusion_matrix(net): matrix = np.zeros((4, 2)) rows = ["A-A", "B-B", "A-B", "B-A"] for i, type in enumerate(rows): x, y, mask, _, _, _ = generate_dms_data(100, type=type, fraction_validation_trials=0.0) x, y, mask = map_device([x, y, mask], net) output, _ = net(x) mask_bool = mask[:, :, 0] == 1 decisions_filtered = torch.stack(output.squeeze()[mask_bool].chunk(output.shape[0])) decisions = torch.sign(decisions_filtered.mean(dim=1)) matrix[i, 0] = (decisions < 0).sum().type(torch.float) / decisions.shape[0] matrix[i, 1] = (decisions >= 0).sum().type(torch.float) / decisions.shape[0] cols = ["different", "same"] print("{:^12s}|{:^12s}|{:^12s}".format(" ", cols[0], cols[1])) print("-" * 40) for i, row in enumerate(rows): print("{:^12s}|{:^12.2f}|{:^12.2f}".format(row, matrix[i, 0], matrix[i, 1])) print("-" * 40) def plot_trajectories(net, trajectories, ax, n_traj=2, style="-", c="C0", interval=[None, None]): m1 = net.m[:, 0].detach().numpy() m2 = net.m[:, 1].detach().numpy() for j in range(n_traj): proj1 = trajectories[j] @ m1 / net.hidden_size proj2 = trajectories[j] @ m2 / net.hidden_size if interval[1] != 0: ax.plot(proj1[: interval[0]], proj2[: interval[0]], c=c, lw=4, linestyle=style) def remove_axes(ax): ax.spines["top"].set_visible(False) ax.spines["right"].set_visible(False) ax.spines["bottom"].set_visible(False) ax.spines["left"].set_visible(False) ax.set(xticks=[], yticks=[]) def _plot_field(net, input, ax, sizes=1.0, rect=(-5, 5, -4, 4), scalings=False): m1 = net.m[:, 0].detach().numpy() m2 = net.m[:, 1].detach().numpy() xmin, xmax, ymin, ymax = rect if scalings: plot_field(net, m1, m2, xmin, xmax, ymin, ymax, input=input, ax=ax, sizes=sizes) else: plot_field_noscalings(net, m1, m2, xmin, xmax, ymin, ymax, input=input, ax=ax, sizes=sizes) remove_axes(ax) def psychometric_matrix(net, n_trials=10, ax=None): if ax is None: fig, ax = plt.subplots() stim1_begin = max_fixation_duration_discrete stim1_end = max_fixation_duration_discrete + max_stimulus1_duration_discrete stim2_begin = stim1_end + max_delay_duration_discrete stim2_end = stim2_begin + max_stimulus2_duration_discrete decision_end = stim2_end + decision_duration_discrete mean_outputs = np.zeros((2, 2)) for inp1 in range(2): for inp2 in range(2): input = torch.zeros(n_trials, decision_end, 2) input[:, stim1_begin:stim1_end, inp1] = 1 input[:, stim2_begin:stim2_end, inp2] = 1 output = net(input) output = output.squeeze().detach().numpy() mean_output = output[:, stim2_end:decision_end].mean() mean_outputs[inp1, inp2] = mean_output image = ax.matshow(mean_outputs, cmap="gray", vmin=-1, vmax=1) ax.set_xticks([]) ax.set_yticks([]) return image