| ''' |
| UNet architecture: Factorized attention Transformer encoder, CNN decoder |
| Encoder is from MPViT |
| ''' |
|
|
| import math |
| from pyexpat import features |
| import torch |
| from torch import nn, einsum |
| from einops import rearrange |
| import sys |
| from typing import Tuple |
| from functools import partial |
| from timm.models.layers import DropPath, trunc_normal_ |
|
|
| sys.path.append('/ubc/ece/home/ra/grads/siyi/Research/skin_lesion_segmentation/MDViT/') |
|
|
| from Models.Transformer.mpvit import FactorAtt_ConvRelPosEnc, ConvRelPosEnc, ConvPosEnc, Mlp, Conv2d_BN |
| from Models.Decoders import UnetDecodingBlockTransformer, UnetDecodingBlockTransformer_M |
| from Models.Transformer.mdvit import Conv2d_BN_M, DWCPatchEmbed_M |
|
|
|
|
|
|
| class DWConv2d_BN(nn.Module): |
| """Depthwise Separable Convolution with BN module. |
| Modify on MPViT DWConv2d_BN, this is for input output are different channel dim""" |
| def __init__( |
| self, |
| in_ch, |
| out_ch, |
| kernel_size=1, |
| stride=1, |
| norm_layer=nn.BatchNorm2d, |
| act_layer=nn.Hardswish, |
| bn_weight_init=1, |
| ): |
| super().__init__() |
|
|
| |
| self.dwconv = nn.Conv2d( |
| in_ch, |
| in_ch, |
| kernel_size, |
| stride, |
| (kernel_size - 1) // 2, |
| groups=in_ch, |
| bias=False, |
| ) |
| |
| self.pwconv = nn.Conv2d(in_ch, out_ch, 1, 1, 0, bias=False) |
| self.bn = norm_layer(out_ch) |
| self.act = act_layer() if act_layer is not None else nn.Identity() |
|
|
| for m in self.modules(): |
| if isinstance(m, nn.Conv2d): |
| n = m.kernel_size[0] * m.kernel_size[1] * m.out_channels |
| m.weight.data.normal_(0, math.sqrt(2.0 / n)) |
| if m.bias is not None: |
| m.bias.data.zero_() |
| elif isinstance(m, nn.BatchNorm2d): |
| m.weight.data.fill_(bn_weight_init) |
| m.bias.data.zero_() |
| |
| |
| |
|
|
| def forward(self, x): |
| """ |
| foward function |
| """ |
| x = self.dwconv(x) |
| x = self.pwconv(x) |
| x = self.bn(x) |
| x = self.act(x) |
|
|
| return x |
|
|
|
|
| class DWCPatchEmbed(nn.Module): |
| """Depthwise Convolutional Patch Embedding layer Image to Patch |
| Embedding. The same as the module in MPViT""" |
| def __init__(self, |
| in_chans=3, |
| embed_dim=768, |
| patch_size=16, |
| stride=1, |
| conv_norm=nn.BatchNorm2d, |
| act_layer=nn.Hardswish): |
| super().__init__() |
|
|
| self.patch_conv = DWConv2d_BN( |
| in_chans, |
| embed_dim, |
| kernel_size=patch_size, |
| stride=stride, |
| norm_layer=conv_norm, |
| act_layer=act_layer, |
| ) |
|
|
| def forward(self, x): |
| """foward function""" |
| x = self.patch_conv(x) |
|
|
| return x |
|
|
|
|
| class FactorAtt_ConvRelPosEnc_Sup(nn.Module): |
| """Factorized attention with convolutional relative position encoding |
| class. |
| Modified for domain attention. Follow Selective kernel. Add domain label |
| r: ratio, max(32,n//r) is the hidden size for the fc layer in domain attention |
| """ |
| def __init__( |
| self, |
| seq_length, |
| dim, |
| num_heads=8, |
| qkv_bias=False, |
| qk_scale=None, |
| attn_drop=0.0, |
| proj_drop=0.0, |
| shared_crpe=None, |
| r=2, |
| num_domains=4, |
| ): |
| super().__init__() |
| self.num_heads = num_heads |
| head_dim = dim // num_heads |
| self.scale = qk_scale or head_dim**-0.5 |
| hidden_dim = max(dim//r,4) |
|
|
| self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias) |
| self.attn_drop = nn.Dropout(attn_drop) |
| self.proj = nn.Linear(dim, dim) |
| self.proj_drop = nn.Dropout(proj_drop) |
|
|
| self.domain_layer = nn.Sequential( |
| nn.Linear(num_domains, hidden_dim), |
| nn.ReLU(inplace=True), |
| nn.Linear(hidden_dim,self.num_heads*head_dim), |
| ) |
|
|
| |
| self.crpe = shared_crpe |
|
|
| def forward(self, x, size, domain_label): |
| """foward function |
| domain_label is one_hot vector |
| """ |
| B, N, C = x.shape |
|
|
| |
| qkv = (self.qkv(x).reshape(B, N, 3, self.num_heads, |
| C // self.num_heads).permute(2, 0, 3, 1, 4)).contiguous() |
| q, k, v = qkv[0], qkv[1], qkv[2] |
|
|
| |
| k_softmax = k.softmax(dim=2) |
| k_softmax_T_dot_v = einsum("b h n k, b h n v -> b h k v", k_softmax, v) |
| factor_att = einsum("b h n k, b h k v -> b h n v", q, |
| k_softmax_T_dot_v) |
| crpe = self.crpe(q, v, size=size) |
| factor_att = self.scale * factor_att + crpe |
|
|
| |
| domain_att = self.domain_layer(domain_label).unsqueeze(2) |
| domain_att = rearrange(domain_att, 'b (h k) c -> b h c k', h=self.num_heads).contiguous() |
| domain_att = torch.softmax(domain_att, dim=1) |
| x = domain_att*factor_att |
|
|
| |
| x = x.transpose(1, 2).contiguous().reshape(B, N, C) |
|
|
| |
| x = self.proj(x) |
| x = self.proj_drop(x) |
|
|
| return x |
|
|
|
|
| class SerialBlock_adapt(nn.Module): |
| """ Serial block class. For UFAT |
| Note: In this implementation, each serial block only contains a conv-attention and a FFN (MLP) module. |
| input: x (B,N,C), (H,W) output: out (B,N,C)""" |
| def __init__(self, seq_length, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0., |
| drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm, shared_cpe=None, shared_crpe=None, |
| adapt_method=None, num_domains=4): |
| super().__init__() |
|
|
| |
| self.cpe = shared_cpe |
| self.norm1 = norm_layer(dim) |
| self.adapt_method = adapt_method |
|
|
|
|
| if self.adapt_method == 'Sup': |
| self.factoratt_crpe = FactorAtt_ConvRelPosEnc_Sup( |
| seq_length, dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, |
| attn_drop=attn_drop, proj_drop=drop, shared_crpe=shared_crpe, num_domains=num_domains, |
| ) |
| else: |
| self.factoratt_crpe = FactorAtt_ConvRelPosEnc( |
| dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, attn_drop=attn_drop, proj_drop=drop, shared_crpe=shared_crpe) |
|
|
| self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity() |
|
|
| |
| self.norm2 = norm_layer(dim) |
| mlp_hidden_dim = int(dim * mlp_ratio) |
| self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop) |
|
|
| def forward(self, x, size: Tuple[int, int], domain_label=None): |
| |
| x = self.cpe(x, size) |
| cur = self.norm1(x) |
| if domain_label != None : |
| cur = self.factoratt_crpe(cur, size, domain_label) |
| else: |
| cur = self.factoratt_crpe(cur, size) |
| x = x + self.drop_path(cur) |
|
|
| |
| cur = self.norm2(x) |
| cur = self.mlp(cur) |
| x = x + self.drop_path(cur) |
|
|
| return x |
|
|
|
|
| class SerialBlock_adapt_M(nn.Module): |
| """ Serial block class. For UFAT |
| Note: In this implementation, each serial block only contains a conv-attention and a FFN (MLP) module. |
| input: x (B,N,C), (H,W) output: out (B,N,C)""" |
| def __init__(self, seq_length, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0., |
| drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm, shared_cpe=None, shared_crpe=None, |
| adapt_method=None, num_domains=4): |
| super().__init__() |
|
|
| |
| self.cpe = shared_cpe |
| |
| self.norm1s = nn.ModuleList([norm_layer(dim) for _ in range(num_domains)]) |
| self.adapt_method = adapt_method |
|
|
| if self.adapt_method == 'Sup': |
| self.factoratt_crpe = FactorAtt_ConvRelPosEnc_Sup( |
| seq_length, dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, |
| attn_drop=attn_drop, proj_drop=drop, shared_crpe=shared_crpe, num_domains=num_domains, |
| ) |
| else: |
| self.factoratt_crpe = FactorAtt_ConvRelPosEnc( |
| dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, attn_drop=attn_drop, proj_drop=drop, shared_crpe=shared_crpe) |
|
|
| self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity() |
|
|
| |
| |
| self.norm2s = nn.ModuleList([norm_layer(dim) for _ in range(num_domains)]) |
| mlp_hidden_dim = int(dim * mlp_ratio) |
| self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop) |
|
|
| def forward(self, x, size: Tuple[int, int], domain_label=None, d=None): |
| |
| d = int(d) |
| x = self.cpe(x, size) |
| cur = self.norm1s[d](x) |
| if self.adapt_method!=None and domain_label != None : |
| cur = self.factoratt_crpe(cur, size, domain_label) |
| else: |
| cur = self.factoratt_crpe(cur, size) |
| x = x + self.drop_path(cur) |
|
|
| |
| cur = self.norm2s[d](x) |
| cur = self.mlp(cur) |
| x = x + self.drop_path(cur) |
|
|
| return x |
|
|
|
|
|
|
| class MHSA_stage_adapt(nn.Module): |
| ''' |
| Multi-head self attention |
| (B, N, C) --> (B, N, C) |
| Combine several Serial blocks for a stage |
| ''' |
| def __init__(self, seq_length, dim, num_layers, num_heads, mlp_ratio, qkv_bias=True, qk_scale=None, |
| drop_rate=0., attn_drop_rate=0., drop_path_rate=0., num_domains=4, |
| norm_layer=nn.LayerNorm, adapt_method=None, crpe_window={3:2, 5:3, 7:3}): |
| super(MHSA_stage_adapt, self).__init__() |
|
|
| self.cpe = ConvPosEnc(dim, k=3) |
| self.crpe = ConvRelPosEnc(Ch=dim//num_heads, h=num_heads, window=crpe_window) |
|
|
| self.mhca_blks = nn.ModuleList( |
| [SerialBlock_adapt( |
| seq_length, dim, num_heads, mlp_ratio, qkv_bias, qk_scale, |
| drop_rate, attn_drop_rate, drop_path_rate, |
| nn.GELU, norm_layer, self.cpe, self.crpe, adapt_method,num_domains, |
| ) for _ in range(num_layers)] |
| ) |
|
|
| def forward(self, input, H, W, domain_label=None): |
| for blk in self.mhca_blks: |
| input = blk(input, size=(H,W)) if domain_label==None else blk(input, (H,W), domain_label) |
| return input |
|
|
|
|
|
|
| class MHSA_stage_adapt_M(nn.Module): |
| ''' |
| Multi-head self attention |
| (B, N, C) --> (B, N, C) |
| Combine several Serial blocks for a stage |
| ''' |
| def __init__(self, seq_length, dim, num_layers, num_heads, mlp_ratio, qkv_bias=True, qk_scale=None, |
| drop_rate=0., attn_drop_rate=0., drop_path_rate=0., num_domains=4, |
| norm_layer=nn.LayerNorm, adapt_method=None, crpe_window={3:2, 5:3, 7:3}): |
| super(MHSA_stage_adapt_M, self).__init__() |
|
|
| self.cpe = ConvPosEnc(dim, k=3) |
| self.crpe = ConvRelPosEnc(Ch=dim//num_heads, h=num_heads, window=crpe_window) |
|
|
| self.mhca_blks = nn.ModuleList( |
| [SerialBlock_adapt_M( |
| seq_length, dim, num_heads, mlp_ratio, qkv_bias, qk_scale, |
| drop_rate, attn_drop_rate, drop_path_rate, |
| nn.GELU, norm_layer, self.cpe, self.crpe, adapt_method,num_domains, |
| ) for _ in range(num_layers)] |
| ) |
|
|
| def forward(self, input, H, W, domain_label=None, d=None): |
| for blk in self.mhca_blks: |
| input = blk(input, size=(H,W),d=d) if domain_label==None else blk(input, (H,W), domain_label,d) |
| return input |
|
|
|
|
|
|
| class BASE(nn.Module): |
| ''' |
| A Conv Position encoding + Factorized attention Transformer |
| use transformer encoder and decoder |
| feature_dim is the 4th stage output dimension |
| do_detach: ture means detach the feature from the last encoder, then pass into projection head |
| Input: an image |
| Output: a list contains features from each stage |
| ''' |
| def __init__( |
| self, |
| img_size=512, |
| in_chans=3, |
| num_stages=4, |
| num_layers=[2, 2, 2, 2], |
| embed_dims=[64, 128, 320, 512], |
| mlp_ratios=[8, 8, 4, 4], |
| num_heads=[8, 8, 8, 8], |
| qkv_bias=True, |
| qk_scale=None, |
| drop_rate=0., |
| attn_drop_rate=0., |
| drop_path_rate=0.0, |
| norm_layer=partial(nn.LayerNorm, eps=1e-6), |
| conv_norm=nn.BatchNorm2d, |
| adapt_method=None, |
| num_domains=4, |
| **kwargs, |
| ): |
| super(BASE, self).__init__() |
| self.num_stages = num_stages |
|
|
| self.stem = nn.Sequential( |
| Conv2d_BN( |
| in_chans, |
| embed_dims[0] // 2, |
| kernel_size=3, |
| stride=2, |
| pad=1, |
| act_layer=nn.Hardswish, |
| ), |
| Conv2d_BN( |
| embed_dims[0] // 2, |
| embed_dims[0], |
| kernel_size=3, |
| stride=2, |
| pad=1, |
| act_layer=nn.Hardswish, |
| ), |
| ) |
|
|
| |
| self.patch_embed_stages = nn.ModuleList([ |
| DWCPatchEmbed( |
| in_chans=embed_dims[idx] if idx==0 else embed_dims[idx-1], |
| embed_dim=embed_dims[idx], |
| patch_size=3, |
| stride=1 if idx==0 else 2, |
| conv_norm=conv_norm, |
| ) for idx in range(self.num_stages) |
| ]) |
|
|
| |
| self.mhsa_stages = nn.ModuleList([ |
| MHSA_stage_adapt( |
| (img_size//2**(idx+2))**2, |
| embed_dims[idx], |
| num_layers=num_layers[idx], |
| num_heads=num_heads[idx], |
| mlp_ratio=mlp_ratios[idx], |
| qkv_bias=qkv_bias, qk_scale=qk_scale, |
| drop_rate=drop_rate, attn_drop_rate=attn_drop_rate, drop_path_rate=drop_path_rate, |
| norm_layer=norm_layer, |
| adapt_method=adapt_method, |
| num_domains=num_domains |
| ) for idx in range(self.num_stages) |
| ]) |
|
|
|
|
| |
| self.bridge = nn.Sequential( |
| nn.Conv2d(embed_dims[3],embed_dims[3],kernel_size=3,stride=1, padding=1), |
| conv_norm(embed_dims[3]), |
| nn.ReLU(inplace=True), |
| nn.Conv2d(embed_dims[3],embed_dims[3]*2,kernel_size=3,stride=1, padding=1), |
| conv_norm(embed_dims[3]*2), |
| nn.ReLU(inplace=True) |
| ) |
|
|
|
|
| |
| self.mhsa_list = [] |
| for idx in range(self.num_stages): |
| self.mhsa_list.append( |
| MHSA_stage_adapt( |
| (img_size//2**(idx+2))**2, |
| embed_dims[idx], |
| num_layers=num_layers[idx], |
| num_heads=num_heads[idx], |
| mlp_ratio=mlp_ratios[idx], |
| qkv_bias=qkv_bias, qk_scale=qk_scale, |
| drop_rate=drop_rate, attn_drop_rate=attn_drop_rate, drop_path_rate=drop_path_rate, |
| norm_layer=norm_layer, |
| adapt_method=adapt_method, |
| num_domains=num_domains |
| ) |
| ) |
|
|
| self.decoder1 = UnetDecodingBlockTransformer(embed_dims[3]*2,embed_dims[3],self.mhsa_list[3],conv_norm=conv_norm) |
| self.decoder2 = UnetDecodingBlockTransformer(embed_dims[3],embed_dims[2],self.mhsa_list[2],conv_norm=conv_norm) |
| self.decoder3 = UnetDecodingBlockTransformer(embed_dims[2],embed_dims[1],self.mhsa_list[1],conv_norm=conv_norm) |
| self.decoder4 = UnetDecodingBlockTransformer(embed_dims[1],embed_dims[0],self.mhsa_list[0],conv_norm=conv_norm) |
| self.finalconv = nn.Sequential( |
| nn.Conv2d(embed_dims[0], 1, kernel_size=1) |
| ) |
|
|
| self.apply(self._init_weights) |
|
|
|
|
| def _init_weights(self, m): |
| if isinstance(m, nn.Linear): |
| trunc_normal_(m.weight, std=.02) |
| if isinstance(m, nn.Linear) and m.bias is not None: |
| nn.init.constant_(m.bias, 0) |
| elif isinstance(m, nn.LayerNorm): |
| nn.init.constant_(m.bias, 0) |
| nn.init.constant_(m.weight, 1.0) |
| elif isinstance(m, nn.Conv2d): |
| fan_out = m.kernel_size[0] * m.kernel_size[1] * m.out_channels |
| fan_out //= m.groups |
| m.weight.data.normal_(0, math.sqrt(2.0 / fan_out)) |
| if m.bias is not None: |
| m.bias.data.zero_() |
| elif isinstance(m, nn.BatchNorm2d): |
| m.weight.data.fill_(1) |
| m.bias.data.zero_() |
|
|
| def forward(self, x, domain_label=None, out_feat=False, out_seg=True): |
| |
| |
| |
| img_size = x.size()[2:] |
| x = self.stem(x) |
| encoder_outs = [] |
| for idx in range(self.num_stages): |
| x = self.patch_embed_stages[idx](x) |
| B,C,H,W = x.shape |
| x = rearrange(x, 'b c h w -> b (h w) c') |
| x = self.mhsa_stages[idx](x, H, W) if domain_label==None else self.mhsa_stages[idx](x, H, W,domain_label) |
| x = rearrange(x, 'b (h w) c -> b c h w', w=W, h=H).contiguous() |
| encoder_outs.append(x) |
| |
| if out_seg == False: |
| x = nn.functional.adaptive_avg_pool2d(encoder_outs[3],1).reshape(B, -1) |
| return {'seg': None, 'feat': x} |
|
|
| |
| out = self.bridge(encoder_outs[3]) |
|
|
| |
| out = self.decoder1(out, encoder_outs[3]) if domain_label==None else self.decoder1(out, encoder_outs[3],domain_label) |
| out = self.decoder2(out, encoder_outs[2]) if domain_label==None else self.decoder2(out, encoder_outs[2],domain_label) |
| out = self.decoder3(out, encoder_outs[1]) if domain_label==None else self.decoder3(out, encoder_outs[1],domain_label) |
| out = self.decoder4(out, encoder_outs[0]) if domain_label==None else self.decoder4(out, encoder_outs[0],domain_label) |
| |
| |
| out = nn.functional.interpolate(out,size = img_size,mode = 'bilinear', align_corners=False) |
| out = self.finalconv(out) |
| |
| if out_feat: |
| return {'seg': out, 'feat': x} |
| else: |
| return out |
|
|
|
|
| class BASE_DSN(nn.Module): |
| ''' |
| use domain-specific normalization |
| A Conv Position encoding + Factorized attention Transformer |
| use transformer encoder and decoder |
| feature_dim is the 4th stage output dimension |
| do_detach: ture means detach the feature from the last encoder, then pass into projection head |
| Input: an image |
| Output: a list contains features from each stage |
| ''' |
| def __init__( |
| self, |
| img_size=512, |
| in_chans=3, |
| num_stages=4, |
| num_layers=[2, 2, 2, 2], |
| embed_dims=[64, 128, 320, 512], |
| mlp_ratios=[8, 8, 4, 4], |
| num_heads=[8, 8, 8, 8], |
| qkv_bias=True, |
| qk_scale=None, |
| drop_rate=0., |
| attn_drop_rate=0., |
| drop_path_rate=0.0, |
| norm_layer=partial(nn.LayerNorm, eps=1e-6), |
| conv_norm=nn.BatchNorm2d, |
| adapt_method=None, |
| num_domains=4, |
| feature_dim=512, |
| **kwargs, |
| ): |
| super(BASE_DSN, self).__init__() |
| self.num_stages = num_stages |
|
|
| self.stem_1 = Conv2d_BN_M( |
| in_chans, |
| embed_dims[0] // 2, |
| kernel_size=3, |
| stride=2, |
| pad=1, |
| act_layer=nn.Hardswish, |
| num_domains=num_domains |
| ) |
| self.stem_2 = Conv2d_BN_M( |
| embed_dims[0] // 2, |
| embed_dims[0], |
| kernel_size=3, |
| stride=2, |
| pad=1, |
| act_layer=nn.Hardswish, |
| num_domains=num_domains |
| ) |
|
|
| |
| self.patch_embed_stages = nn.ModuleList([ |
| DWCPatchEmbed_M( |
| in_chans=embed_dims[idx] if idx==0 else embed_dims[idx-1], |
| embed_dim=embed_dims[idx], |
| patch_size=3, |
| stride=1 if idx==0 else 2, |
| conv_norm=conv_norm, |
| num_domains=num_domains |
| ) for idx in range(self.num_stages) |
| ]) |
|
|
| |
| self.mhsa_stages = nn.ModuleList([ |
| MHSA_stage_adapt_M( |
| (img_size//2**(idx+2))**2, |
| embed_dims[idx], |
| num_layers=num_layers[idx], |
| num_heads=num_heads[idx], |
| mlp_ratio=mlp_ratios[idx], |
| qkv_bias=qkv_bias, qk_scale=qk_scale, |
| drop_rate=drop_rate, attn_drop_rate=attn_drop_rate, drop_path_rate=drop_path_rate, |
| norm_layer=norm_layer, |
| adapt_method=adapt_method, |
| num_domains=num_domains |
| ) for idx in range(self.num_stages) |
| ]) |
|
|
| |
| self.bridge_conv1 = nn.Conv2d(embed_dims[3],embed_dims[3],kernel_size=3,stride=1, padding=1) |
| self.bridge_norms1 = nn.ModuleList([conv_norm(embed_dims[3]) for _ in range(num_domains)]) |
| self.bridge_act1 = nn.ReLU(inplace=True) |
| self.bridge_conv2 = nn.Conv2d(embed_dims[3],embed_dims[3]*2,kernel_size=3,stride=1, padding=1) |
| self.bridge_norms2 = nn.ModuleList([conv_norm(embed_dims[3]*2) for _ in range(num_domains)]) |
| self.bridge_act2 = nn.ReLU(inplace=True) |
|
|
| |
| self.mhsa_list = [] |
| for idx in range(self.num_stages): |
| self.mhsa_list.append( |
| MHSA_stage_adapt_M( |
| (img_size//2**(idx+2))**2, |
| embed_dims[idx], |
| num_layers=num_layers[idx], |
| num_heads=num_heads[idx], |
| mlp_ratio=mlp_ratios[idx], |
| qkv_bias=qkv_bias, qk_scale=qk_scale, |
| drop_rate=drop_rate, attn_drop_rate=attn_drop_rate, drop_path_rate=drop_path_rate, |
| norm_layer=norm_layer, |
| adapt_method=adapt_method, |
| num_domains=num_domains |
| ) |
| ) |
|
|
| self.decoder1 = UnetDecodingBlockTransformer_M(embed_dims[3]*2,embed_dims[3],self.mhsa_list[3],conv_norm=conv_norm,num_domains=num_domains) |
| self.decoder2 = UnetDecodingBlockTransformer_M(embed_dims[3],embed_dims[2],self.mhsa_list[2],conv_norm=conv_norm,num_domains=num_domains) |
| self.decoder3 = UnetDecodingBlockTransformer_M(embed_dims[2],embed_dims[1],self.mhsa_list[1],conv_norm=conv_norm,num_domains=num_domains) |
| self.decoder4 = UnetDecodingBlockTransformer_M(embed_dims[1],embed_dims[0],self.mhsa_list[0],conv_norm=conv_norm,num_domains=num_domains) |
| self.finalconv = nn.Sequential( |
| nn.Conv2d(embed_dims[0], 1, kernel_size=1) |
| ) |
|
|
| self.apply(self._init_weights) |
|
|
|
|
| def _init_weights(self, m): |
| if isinstance(m, nn.Linear): |
| trunc_normal_(m.weight, std=.02) |
| if isinstance(m, nn.Linear) and m.bias is not None: |
| nn.init.constant_(m.bias, 0) |
| elif isinstance(m, nn.LayerNorm): |
| nn.init.constant_(m.bias, 0) |
| nn.init.constant_(m.weight, 1.0) |
| elif isinstance(m, nn.Conv2d): |
| fan_out = m.kernel_size[0] * m.kernel_size[1] * m.out_channels |
| fan_out //= m.groups |
| m.weight.data.normal_(0, math.sqrt(2.0 / fan_out)) |
| if m.bias is not None: |
| m.bias.data.zero_() |
| elif isinstance(m, nn.BatchNorm2d): |
| m.weight.data.fill_(1) |
| m.bias.data.zero_() |
|
|
| def forward(self, x, domain_label=None, d=None, out_feat=False, out_seg=True): |
| |
| |
| |
| img_size = x.size()[2:] |
| |
| x = self.stem_1(x,d=d) |
| x = self.stem_2(x,d=d) |
| encoder_outs = [] |
| for idx in range(self.num_stages): |
| x = self.patch_embed_stages[idx](x,d) |
| B,C,H,W = x.shape |
| x = rearrange(x, 'b c h w -> b (h w) c') |
| x = self.mhsa_stages[idx](x, H, W,d=d) if domain_label==None else self.mhsa_stages[idx](x, H, W,domain_label,d) |
| x = rearrange(x, 'b (h w) c -> b c h w', w=W, h=H).contiguous() |
| encoder_outs.append(x) |
| |
| if out_seg == False: |
| x = nn.functional.adaptive_avg_pool2d(encoder_outs[3],1).reshape(B, -1) |
| return {'seg': None, 'feat': x} |
|
|
| |
| |
| d_int = int(d) |
| out = self.bridge_conv1(encoder_outs[3]) |
| out = self.bridge_norms1[d_int](out) |
| out = self.bridge_act1(out) |
| out = self.bridge_conv2(out) |
| out = self.bridge_norms2[d_int](out) |
| out = self.bridge_act2(out) |
|
|
| |
| out = self.decoder1(out, encoder_outs[3],d=d) if domain_label==None else self.decoder1(out, encoder_outs[3],d,domain_label) |
| out = self.decoder2(out, encoder_outs[2],d=d) if domain_label==None else self.decoder2(out, encoder_outs[2],d,domain_label) |
| out = self.decoder3(out, encoder_outs[1],d=d) if domain_label==None else self.decoder3(out, encoder_outs[1],d,domain_label) |
| out = self.decoder4(out, encoder_outs[0],d=d) if domain_label==None else self.decoder4(out, encoder_outs[0],d,domain_label) |
| |
| |
| out = nn.functional.interpolate(out,size = img_size,mode = 'bilinear', align_corners=False) |
| out = self.finalconv(out) |
| |
| if out_feat: |
| x = nn.functional.adaptive_avg_pool2d(encoder_outs[3],1).reshape(B, -1) |
| return {'seg': out, 'feat': x} |
| else: |
| return out |
|
|
|
|
|
|
|
|
|
|
| if __name__ == '__main__': |
| x = torch.randn(5,3,512,512) |
| domain_label = torch.randint(0,4,(5,)) |
| |
|
|
| domain_label = torch.nn.functional.one_hot(domain_label, 4).float() |
|
|
| |
| |
| |
| |
| |
| |
| |
| model = BASE_DSN(adapt_method=None,num_domains=4) |
| y = model(x, domain_label, d='1', out_feat=True) |
|
|
| print(y['seg'].shape) |
| print(y['feat'].shape) |
|
|
| param = sum(p.numel() for p in model.parameters() if p.requires_grad) |
| print(f"number of parameter: {param/1e6} M") |
|
|
| count = 0 |
| for name, params in model.named_parameters(): |
| if 'norm' not in name: |
| count += params.numel() |
| print(f'number of params not in Norm: {count/1e6} M') |