import torch import torch.nn as nn import torch.nn.functional as F from timm.models.layers import trunc_normal_, DropPath from functools import partial import numpy as np from scipy.spatial import distance class LayerNorm(nn.Module): r""" LayerNorm that supports two data formats: channels_last (default) or channels_first. The ordering of the dimensions in the inputs. channels_last corresponds to inputs with shape (batch_size, height, width, channels) while channels_first corresponds to inputs with shape (batch_size, channels, height, width). """ def __init__(self, normalized_shape, eps=1e-6, data_format="channels_last"): super().__init__() self.weight = nn.Parameter(torch.ones(normalized_shape)) self.bias = nn.Parameter(torch.zeros(normalized_shape)) self.eps = eps self.data_format = data_format if self.data_format not in ["channels_last", "channels_first"]: raise NotImplementedError self.normalized_shape = (normalized_shape, ) def forward(self, x): if self.data_format == "channels_last": return F.layer_norm(x, self.normalized_shape, self.weight, self.bias, self.eps) elif self.data_format == "channels_first": u = x.mean(1, keepdim=True) s = (x - u).pow(2).mean(1, keepdim=True) x = (x - u) / torch.sqrt(s + self.eps) # print(self.weight.size()) x = self.weight[:, None, None, None] * x + self.bias[:, None, None, None] return x class repux_block(nn.Module): r""" ConvNeXt Block. There are two equivalent implementations: (1) DwConv -> LayerNorm (channels_first) -> 1x1 Conv -> GELU -> 1x1 Conv; all in (N, C, H, W) (2) DwConv -> Permute to (N, H, W, C); LayerNorm (channels_last) -> Linear -> GELU -> Linear; Permute back We use (2) as we find it slightly faster in PyTorch Args: dim (int): Number of input channels. drop_path (float): Stochastic depth rate. Default: 0.0 layer_scale_init_value (float): Init value for Layer Scale. Default: 1e-6. """ def __init__(self, dim, ks, a, drop_path=0., layer_scale_init_value=1e-6, deploy=False): super().__init__() ## Block Structure self.ks = ks self.dwconv = nn.Conv3d(dim, dim, kernel_size=self.ks, padding=self.ks//2, groups=dim) self.norm = nn.BatchNorm3d(dim) self.act = nn.GELU() self.deploy = deploy ## Bayesian Frequency Matrix (BFM) if self.deploy == False: alpha = a BFM = np.zeros((dim, 1, self.ks, self.ks, self.ks)) for i in range(self.ks): for j in range(self.ks): for k in range(self.ks): point_1 = (i, j, k) point_2 = (self.ks//2, self.ks//2, self.ks//2) dist = distance.euclidean(point_1, point_2) BFM[:, :, i, j, k] = alpha / (dist + alpha) self.BFM = torch.from_numpy(BFM).type(torch.cuda.FloatTensor) def forward(self, x): ## Re-parameterize the convolutional layer weights if self.deploy == False: ## Only perform re-parameterization in training w_0 = self.dwconv.weight w_1 = w_0 * self.BFM self.dwconv.weight = torch.nn.Parameter(w_1) ## Perform Convolution-Norm-Activation feat = self.dwconv(x) feat = self.norm(feat) feat = self.act(feat) return feat class repuxnet_conv(nn.Module): """ Args: in_chans (int): Number of input image channels. Default: 3 num_classes (int): Number of classes for classification head. Default: 1000 depths (tuple(int)): Number of blocks at each stage. Default: [3, 3, 9, 3] dims (int): Feature dimension at each stage. Default: [96, 192, 384, 768] drop_path_rate (float): Stochastic depth rate. Default: 0. layer_scale_init_value (float): Init value for Layer Scale. Default: 1e-6. head_init_scale (float): Init scaling value for classifier weights and biases. Default: 1. """ def __init__(self, in_chans=1, depths=[2, 2, 2, 2], dims=[48, 96, 192, 384], ks=21, a=1, drop_path_rate=0., layer_scale_init_value=1e-6, out_indices=[0, 1, 2, 3], deploy=False): super().__init__() self.downsample_layers = nn.ModuleList() # stem and 3 intermediate downsampling conv layers # stem = nn.Sequential( # nn.Conv3d(in_chans, dims[0], kernel_size=7, stride=2, padding=3), # LayerNorm(dims[0], eps=1e-6, data_format="channels_first") # ) stem = nn.Sequential( nn.Conv3d(in_chans, dims[0], kernel_size=7, stride=2, padding=3), LayerNorm(dims[0], eps=1e-6, data_format="channels_first") ) self.downsample_layers.append(stem) for i in range(3): downsample_layer = nn.Sequential( LayerNorm(dims[i], eps=1e-6, data_format="channels_first"), nn.Conv3d(dims[i], dims[i+1], kernel_size=2, stride=2), ) self.downsample_layers.append(downsample_layer) self.stages = nn.ModuleList() dp_rates = [x.item() for x in torch.linspace(0, drop_path_rate, sum(depths))] cur = 0 self.deploy = deploy for i in range(4): stage = nn.Sequential( *[repux_block(dim=dims[i], ks=ks, a=a, drop_path=dp_rates[cur + j], layer_scale_init_value=layer_scale_init_value, deploy=self.deploy) for j in range(depths[i])] ) self.stages.append(stage) cur += depths[i] self.out_indices = out_indices norm_layer = partial(LayerNorm, eps=1e-6, data_format="channels_first") for i_layer in range(4): layer = norm_layer(dims[i_layer]) layer_name = f'norm{i_layer}' self.add_module(layer_name, layer) # self.apply(self._init_weights) def forward_features(self, x): outs = [] for i in range(4): # print(i) # print(x.size()) x = self.downsample_layers[i](x) # print(x.size()) x = self.stages[i](x) # print(x.size()) if i in self.out_indices: norm_layer = getattr(self, f'norm{i}') x_out = norm_layer(x) outs.append(x_out) return tuple(outs) def forward(self, x): x = self.forward_features(x) return x