""" Author: Mélanie Gaillochet Date: 2021-11-26 """ from collections import Iterator import numpy as np import torch from torch.nn import functional as F from torch.utils.data import Sampler from Utils.train_utils import apply_dropout from Utils.augmentation_utils import augment_data, reverse_augment_data from Utils.augmentation_utils import entropy_2d, JSD class _InfiniteSubsetRandomIterator(Iterator): def __init__(self, data_source, indices, shuffle=True): self.data_source = data_source self.indices = indices self.shuffle = shuffle if self.shuffle: permuted_indices = np.random.permutation(self.indices).tolist() self.iterator = iter(permuted_indices) else: self.iterator = iter(self.indices) def __next__(self): try: idx = next(self.iterator) except StopIteration: if self.shuffle: permuted_indices = np.random.permutation(self.indices).tolist() self.iterator = iter(permuted_indices) else: self.iterator = iter(self.indices) idx = next(self.iterator) return idx class InfiniteSubsetRandomSampler(Sampler): """ This is a sampler that randomly selects data indices from a list of indices, in an infinite loop """ def __init__(self, data_source, indices, shuffle=True): self.data_source = data_source self.indices = indices self.shuffle = shuffle def __iter__(self): return _InfiniteSubsetRandomIterator(self.data_source, self.indices, shuffle=self.shuffle) def __len__(self): return len(self.data_source) class SubsetSequentialSampler(torch.utils.data.Sampler): r"""Samples elements sequentially from a given list of indices, without replacement. Arguments: indices (sequence): a sequence of indices """ def __init__(self, indices): self.indices = indices def __iter__(self): return (self.indices[i] for i in range(len(self.indices))) def __len__(self): return len(self.indices) class InfiniteRandomSampler(Sampler): def __init__(self, data_source, shuffle=True): super().__init__(data_source) self.data_source = data_source self.shuffle = shuffle def __iter__(self): if len(self.data_source) > 0: while True: yield from self.__iter_once__() else: yield from iter([]) def __iter_once__(self): if self.shuffle: return iter(torch.randperm(len(self.data_source)).tolist()) return iter(torch.arange(start=0, end=len(self.data_source)).tolist()) def __len__(self): return len(self.data_source) def get_different_preds(transformation_type, inputs, model, device, num_dropout_inference=None, data_aug_gaussian_mean=0, data_aug_gaussian_std=0): """ We get the different model predictions under the given transformation type :param transformation type: type of trasformation applied to data or model ('dropout' or 'data_aug') Output: - cur_prob_list (list of torch tensors) - cur_pred_list (list of numpy arrays) """ model = model.to(device) model.eval() cur_pred_list = [] cur_prob_list = [] if transformation_type == 'data_aug': for flip in [0, 1]: for n_rotation in range(0, 4): # We do inference on the augmented data aug_inputs = augment_data( inputs, flip, n_rotation, flip_axis=2, rot_axis0=2, rot_axis1=3, mean_gaussian=data_aug_gaussian_mean, std_gaussian=data_aug_gaussian_std) aug_inputs = aug_inputs.to(device) aug_output, _ = model(aug_inputs) # We do the inverse transformation on the output rev_output = reverse_augment_data(aug_output, flip, n_rotation, flip_axis=2, rot_axis0=2, rot_axis1=3) # We get output probability and prediction rev_prob = F.softmax(rev_output, dim=1) rev_pred = torch.argmax(rev_prob, dim=1) # We keep track of the output probabilities and prediction cur_prob_list.append(rev_prob) cur_pred_list.append(rev_pred.detach().cpu().numpy()) elif transformation_type == 'dropout': # We enable dropout model.apply(apply_dropout) for i in range(num_dropout_inference): cur_output, _ = model(inputs) # We get output probability and prediction cur_prob = F.softmax(cur_output, dim=1) cur_pred = torch.argmax(cur_prob, dim=1) # We keep track of the output probabilities and prediction cur_prob_list.append(cur_prob) cur_pred_list.append(cur_pred.detach().cpu().numpy()) return cur_prob_list, cur_pred_list def get_uncertainty_multiple_preds(model, unlabeled_dataloader, device, transformation_type, num_dropout_inference=None, alpha_jsd=0.5, data_aug_gaussian_mean=0, data_aug_gaussian_std=0): """ We get the uncertainty measure for different predictions of the same unlabeled data (ie: under different augmentations, difefrent dropout, etc.) The uncertainty is given as mean variance, max variance, mean entropy (averaged for all channels, then all pixels) and JSD """ indice_list = [] data_list = [] target_list = [] preds_list = [] variance_list = [] entropy_list = [] jsd_list = [] mean_pred_list = [] mean_variance_list = [] max_variance_list = [] mean_entropy_list = [] mean_jsd_list = [] # We iterate through the unlabeled datatloader with torch.no_grad(): for (inputs, labels, index) in unlabeled_dataloader: inputs = inputs.to(device, dtype=torch.float) labels = labels.to(device) cur_prob_list, cur_pred_list = get_different_preds(transformation_type, inputs, model, device, num_dropout_inference, data_aug_gaussian_mean=data_aug_gaussian_mean, data_aug_gaussian_std=data_aug_gaussian_std) # We concatenate the output probability list of augmented inputs prob_concat = torch.concat(cur_prob_list, dim=0) #3print('prob_concat {}'.format(prob_concat.shape)) # We compute the mean, variance, entropy and JSD of the result probabilities mean_prob = torch.mean(prob_concat, dim=0) # Gives mean output probability (shape C x H x W) var_prob = torch.var(prob_concat, dim=0) # Gives variance of output probabilities (shape C x H x W) entropy = entropy_2d(prob_concat, dim=0) # Gives entropy over output probabilities (shape C x H x W) jsd = JSD(prob_concat, alpha=alpha_jsd) # We keep track of all dataloader results cur_index = index.cpu().numpy() indice_list.extend(cur_index.tolist()) data_list.append(inputs.detach().cpu().numpy()) target_list.append(labels.detach().cpu().numpy()) preds_list.append(np.concatenate(cur_pred_list, axis=0)) # We compute the mean prediction (shape H x W) mean_pred = torch.argmax(mean_prob, dim=0) mean_pred_list.append(mean_pred.detach().cpu().numpy()) # We keep track of the variance image_variance = torch.mean(var_prob, dim=0) # mean over all channels (shape H x W) variance_list.append(image_variance.detach().cpu().numpy()) mean_var = torch.mean(var_prob) # mean over all image (float) mean_variance_list.append(mean_var.item()) max_var = torch.max(var_prob) # mean over all image (float) max_variance_list.append(max_var.item()) # We keep track of the entropy image_entropy = torch.mean(entropy, dim=0) # mean over all channels (shape H x W) entropy_list.append(image_entropy.detach().cpu().numpy()) mean_entropy = torch.mean(entropy) # mean over all image (float) mean_entropy_list.append(mean_entropy.item()) # We keep track of the JSD jsd_list.append(jsd.detach().cpu().detach()) # (shape H x W) mean_jsd = torch.mean(jsd) # mean over all image (float) mean_jsd_list.append(mean_jsd.item()) return indice_list, mean_variance_list, max_variance_list, mean_jsd_list