from types import MethodType import numpy as np import pytest import sevenn._keys as KEY import torch from ase.build import bulk, molecule from sevenn.atom_graph_data import AtomGraphData from sevenn.train.dataload import unlabeled_atoms_to_graph from sevenn.util import model_from_checkpoint, pretrained_name_to_path # https://github.com/MDIL-SNU/SevenNet?tab=readme-ov-file#sevennet-l3i5-12dec2024 def load_pretrained_sevennet(device="cpu"): cp_path = pretrained_name_to_path("7net-0_11July2024") sevennet_model, config = model_from_checkpoint(cp_path) cutoff = config["cutoff"] # Move model to device sevennet_model = sevennet_model.to(device) sevennet_model.original_forward = sevennet_model.forward sevennet_model.set_is_batch_data(False) def forward(self, atoms): data = AtomGraphData.from_numpy_dict(unlabeled_atoms_to_graph(atoms, cutoff)) # Move data to device data = data.to(device) sevennet_model.forward = sevennet_model.original_forward output = sevennet_model(data) sevennet_model.forward = MethodType(forward, sevennet_model) energy = output[KEY.PRED_TOTAL_ENERGY] results = { "free_energy": energy, "energy": energy, "energies": (output[KEY.ATOMIC_ENERGY].reshape(len(atoms))), "forces": output[KEY.PRED_FORCE], "stress": (-output[KEY.PRED_STRESS])[ [0, 1, 2, 4, 5, 3] ], # as voigt notation), } return results sevennet_model.forward = MethodType(forward, sevennet_model) return sevennet_model