import pytorch_lightning as pl import torch from e3nn.o3 import Irreps from mace.modules import ScaleShiftMACE from mace.modules.blocks import RealAgnosticResidualInteractionBlock from matsciml.datasets.transforms import ( PeriodicPropertiesTransform, PointCloudToGraphTransform, ) from matsciml.lightning.data_utils import MatSciMLDataModule from pytorch_lightning.callbacks import ( LearningRateMonitor, ModelCheckpoint, StochasticWeightAveraging, ) from pytorch_lightning.loggers import WandbLogger from torch import nn from matsciml.models.base import ForceRegressionTask from matsciml.lightning.callbacks import ( ExponentialMovingAverageCallback, ManualGradientClip, ) from matsciml.models.pyg.mace import MACEWrapper """ This script is used to reproduce the MACE training run on the full LiPS dataset using the matsciml pipeline. The run should be reproducible using public matsciml#940575c, and should be entirely self-contained. Notable things: 1. Uses a variety of callbacks, particularly gradient clipping and exponential moving average weights. 2. Periodic boundary conditions with a cut off of 5 3. Logs to weights and biases 4. Sets medium precision for single precision; uses tensor cores at lower precision (i.e. FP32 = combined FP16) but improves throughput """ pl.seed_everything(215125) # use tensor cores torch.set_float32_matmul_precision("medium") available_models = { "mace": { "encoder_class": MACEWrapper, "encoder_kwargs": { "mace_module": ScaleShiftMACE, "num_atom_embedding": 100, # this is set to 100 and will use ion energies "r_max": 5.0, "num_bessel": 8, "num_polynomial_cutoff": 5.0, "max_ell": 3, "interaction_cls": RealAgnosticResidualInteractionBlock, "interaction_cls_first": RealAgnosticResidualInteractionBlock, "num_interactions": 2, "hidden_irreps": Irreps("128x0e + 128x1o"), "atom_embedding_dim": 16, "MLP_irreps": Irreps("16x0e"), "avg_num_neighbors": 25.188983917236328, "correlation": 3, "radial_type": "bessel", "gate": nn.SiLU(), "atomic_inter_scale": 0.610558, "atomic_inter_shift": 0, "distance_transform": None, }, # note we are using the output heads for the task - not outputs from MACE! "output_kwargs": {"lazy": False, "input_dim": 640, "hidden_dim": 640}, "task_loss_scaling": {"energy": 1, "force": 10}, } } ROOT_DIR = "/datasets-alt/molecular-data/lips" task = ForceRegressionTask(**available_models["mace"]) dm = MatSciMLDataModule( "LiPSDataset", train_path=f"{ROOT_DIR}/train", val_split=f"{ROOT_DIR}/val", dset_kwargs={ "transforms": [ PeriodicPropertiesTransform(5.0, adaptive_cutoff=True), PointCloudToGraphTransform( "pyg", node_keys=["pos", "atomic_numbers"], ), ], }, batch_size=16, num_workers=8, ) save_dir = "./wandb_logs" wb_logger = WandbLogger( log_model="all", save_dir=save_dir, project="matsciml-uip-eval", entity="laserkelvin", mode="online", ) trainer = pl.Trainer( accelerator="cuda", devices=1, max_epochs=100, logger=wb_logger, callbacks=[ StochasticWeightAveraging( swa_lrs=1e-2, swa_epoch_start=0.6, annealing_epochs=30 ), ExponentialMovingAverageCallback(decay=0.99), ManualGradientClip(10.0), LearningRateMonitor("step"), ModelCheckpoint(monitor="val_force_epoch", save_top_k=5), ], ) trainer.fit(task, datamodule=dm)