from pathlib import Path import numpy as np import pytorch_lightning as pl import torch import wandb from matsciml.datasets.transforms import ( PeriodicPropertiesTransform, PointCloudToGraphTransform, ) from matsciml.lightning.data_utils import MatSciMLDataModule from matsciml.models.base import ForceRegressionTask """ This script acts as an intermediate step for validating the trained MACE model on LiPS. We download the uploaded checkpoint with the lowest validation force error, load the checkpoint into a `ForceRegressionTask`, then run through the validation set with the same loading pipeline. The saved checkpoint weights correspond to the exponential moving averaged ones. After going through the full validation set, we push the predicted and ground truth values to the initialized `wandb` run. """ pl.seed_everything(215125) torch.set_float32_matmul_precision("medium") run = wandb.init( project="matsciml-uip-eval", tags=["inference", "validation", "results"] ) artifact = run.use_artifact( "laserkelvin/matsciml-uip-eval/model-pfs05aqp:v74", type="model" ) artifact_dir = Path(artifact.download()) task = ForceRegressionTask.load_from_checkpoint(artifact_dir.joinpath("model.ckpt")) # move task to device task = task.to("cuda") ROOT_DIR = "/datasets-alt/molecular-data/lips" dm = MatSciMLDataModule( "LiPSDataset", train_path=f"{ROOT_DIR}/train", val_split=f"{ROOT_DIR}/val", dset_kwargs={ "transforms": [ PeriodicPropertiesTransform(5.0, adaptive_cutoff=True), PointCloudToGraphTransform( "pyg", node_keys=["pos", "atomic_numbers"], ), ], }, batch_size=16, num_workers=8, ) # manual inference dm.setup("fit") val_loader = dm.val_dataloader() def to(data, device): """Simple utility function to move things to correct device""" new_dict = {} for key, value in data.items(): if hasattr(value, "to"): new_dict[key] = value.to(device) else: new_dict[key] = value return new_dict pred_energies = [] true_energies = [] pred_forces = [] true_forces = [] for index, batch in enumerate(val_loader): # make sure we don't contaminate task.zero_grad(True) batch = to(batch, task.device) # run forward pass outputs = task(batch) energies = outputs["energy"].detach().cpu().numpy() forces = outputs["force"].detach().cpu().numpy() pred_energies.append(energies) pred_forces.append(forces) # save the ground truth labels as well true_energies.append(batch["targets"]["energy"].cpu().numpy()) true_forces.append(batch["targets"]["force"].cpu().numpy()) # create a wandb artifact object to stash the results to infer_art = wandb.Artifact(name="mace-uip-validation", type="result") for array, name in zip( [pred_energies, pred_forces, true_energies, true_forces], ["pred_energies", "pred_forces", "true_energies", "true_forces"], ): output_path = artifact_dir.joinpath(name).with_suffix(".npy") array = np.vstack(array) np.save(output_path, array) # somewhat annoyingly, this omits the file extension when pushed infer_art.add_file(local_path=output_path, name=name) run.log_artifact(infer_art)