| """Sphinx extension: enhance dataset documentation pages. |
| |
| 1. Injects an enhanced dataset card (paradigm chips, stats, action buttons) |
| 2. Injects an adaptive visual summary grid with panels for timeline, class |
| balance, sessions, channels, and HED tags (when available) |
| 3. Restructures the docstring into a tabbed layout (Overview, Code Examples, |
| Metadata, Notes) |
| 4. Shows inherited methods below tabs |
| |
| Pre-generated SVG images live in ``_static/timelines/<ClassName>.svg`` and |
| ``_static/viz/<ClassName>_classes.svg`` / ``<ClassName>_sessions.svg``. |
| |
| To regenerate *all* SVGs (timelines + viz), run (from the repo root):: |
| |
| PYTHONPATH=. python scripts/generate_dataset_viz.py |
| """ |
|
|
| import csv |
| import functools |
| import inspect |
| import json |
| import math |
| import os |
| import re |
| import statistics |
| from datetime import datetime, timezone |
| from html import escape |
| from urllib.parse import quote |
| from urllib.request import Request, urlopen |
|
|
|
|
| try: |
| from dataset_constants import ( |
| PARADIGM_COLORS, |
| PARADIGM_LABELS, |
| ) |
| from dataset_constants import country_flag as _country_flag_iso |
| from dataset_constants import ( |
| normalize_country, |
| ) |
| except ImportError: |
| from docs.source.sphinxext.dataset_constants import ( |
| PARADIGM_COLORS, |
| PARADIGM_LABELS, |
| ) |
| from docs.source.sphinxext.dataset_constants import country_flag as _country_flag_iso |
| from docs.source.sphinxext.dataset_constants import ( |
| normalize_country, |
| ) |
|
|
|
|
| _PARADIGM_LABELS = PARADIGM_LABELS |
| _PARADIGM_COLORS = PARADIGM_COLORS |
|
|
| _BENCHMARK_FILES = [ |
| ("within_session_mi_left_vs_right_hand.csv", "MI left vs right"), |
| ("within_session_mi_all_classes.csv", "MI all classes"), |
| ("within_session_mi_right_hand_vs_feet.csv", "MI right hand vs feet"), |
| ("within_session_ssvep_all_classes.csv", "SSVEP all classes"), |
| ("within_session_erp_p300_all_classes.csv", "ERP/P300 all classes"), |
| ] |
| _BENCHMARK_CONTEXT_CACHE = {} |
| _DOI_METADATA_CACHE = {} |
| _DOI_CACHE_LOADED = False |
| _DOI_RE = re.compile(r"^10\.\d{4,}/", re.IGNORECASE) |
| _RST_INLINE_RE = re.compile(r"\*\*(.+?)\*\*|``(.+?)``|\*(.+?)\*") |
| _RST_FOOTNOTE_RE = re.compile(r"\s*\[\d+\]_\.?") |
| _RST_LIST_SPLIT_RE = re.compile(r"\s+- ") |
| _DATASET_PAGEVIEWS_CACHE = None |
| _DATASET_PAGEVIEWS_CACHE_SRC = None |
|
|
| |
| |
| |
| |
|
|
| _CC_ICONS_DIR = os.path.join(os.path.dirname(__file__), "..", "_static", "icons", "cc") |
|
|
|
|
| @functools.lru_cache(maxsize=None) |
| def _cc_icon_svg(icon_key, size=16): |
| """Return an inline ``<svg>`` element for a Creative Commons icon. |
| |
| Reads the SVG file from ``_static/icons/cc/<icon_key>.svg`` (cached via |
| ``lru_cache``) and injects ``width``/``height``/``aria-hidden`` attributes |
| so it can be embedded inline. |
| """ |
| svg_path = os.path.join(_CC_ICONS_DIR, f"{icon_key}.svg") |
| try: |
| with open(svg_path, "r") as fh: |
| svg = fh.read().strip() |
| except FileNotFoundError: |
| return "" |
| if not svg: |
| return "" |
| |
| return svg.replace( |
| "<svg ", |
| f'<svg width="{size}" height="{size}" aria-hidden="true" ', |
| 1, |
| ) |
|
|
|
|
| |
| |
| |
|
|
| _LICENSE_INFO = { |
| "cc-by-4.0": ( |
| "CC BY 4.0", |
| "https://creativecommons.org/licenses/by/4.0/", |
| ["cc", "by"], |
| ), |
| "cc-by-1.0": ( |
| "CC BY 1.0", |
| "https://creativecommons.org/licenses/by/1.0/", |
| ["cc", "by"], |
| ), |
| "cc-by-sa-4.0": ( |
| "CC BY-SA 4.0", |
| "https://creativecommons.org/licenses/by-sa/4.0/", |
| ["cc", "by", "sa"], |
| ), |
| "cc-by-nc-4.0": ( |
| "CC BY-NC 4.0", |
| "https://creativecommons.org/licenses/by-nc/4.0/", |
| ["cc", "by", "nc"], |
| ), |
| "cc-by-nc-sa-4.0": ( |
| "CC BY-NC-SA 4.0", |
| "https://creativecommons.org/licenses/by-nc-sa/4.0/", |
| ["cc", "by", "nc", "sa"], |
| ), |
| "cc-by-nc-nd-4.0": ( |
| "CC BY-NC-ND 4.0", |
| "https://creativecommons.org/licenses/by-nc-nd/4.0/", |
| ["cc", "by", "nc", "nd"], |
| ), |
| "cc-by-nd-4.0": ( |
| "CC BY-ND 4.0", |
| "https://creativecommons.org/licenses/by-nd/4.0/", |
| ["cc", "by", "nd"], |
| ), |
| "cc0-1.0": ( |
| "CC0 1.0", |
| "https://creativecommons.org/publicdomain/zero/1.0/", |
| ["cc", "zero"], |
| ), |
| "odc-by-1.0": ("ODC-By 1.0", "https://opendatacommons.org/licenses/by/1-0/", []), |
| "gpl-3.0": ("GPL 3.0", "https://www.gnu.org/licenses/gpl-3.0.html", []), |
| "unknown": ("Unknown", None, []), |
| } |
|
|
| |
| _LICENSE_ALIASES = { |
| "creative commons attribution license": "cc-by-4.0", |
| "cc by": "cc-by-4.0", |
| "cc by 4.0": "cc-by-4.0", |
| } |
|
|
|
|
| def _normalize_license(raw): |
| """Normalize a raw license string to a ``_LICENSE_INFO`` key (or *None*).""" |
| if not raw: |
| return None |
| key = raw.strip().lower().replace(" ", "-") |
| if key in _LICENSE_INFO: |
| return key |
| |
| alias_key = raw.strip().lower() |
| return _LICENSE_ALIASES.get(alias_key) or _LICENSE_ALIASES.get(key) |
|
|
|
|
| def _is_concrete_dataset(obj): |
| """Check if *obj* is a concrete (instantiable) MOABB dataset class.""" |
| try: |
| from moabb.datasets.base import BaseDataset |
| except Exception: |
| return False |
| return ( |
| isinstance(obj, type) |
| and issubclass(obj, BaseDataset) |
| and obj is not BaseDataset |
| and not getattr(obj, "__abstractmethods__", set()) |
| ) |
|
|
|
|
| def _repo_root(): |
| """Return repository root path (relative to this extension file).""" |
| return os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..", "..")) |
|
|
|
|
| def _get_dataset_source_url(obj): |
| """Build a GitHub source URL for a dataset class.""" |
| try: |
| src_file = inspect.getsourcefile(obj) or inspect.getfile(obj) |
| if not src_file: |
| return None |
| repo_root = _repo_root() |
| rel_path = os.path.relpath(src_file, repo_root) |
| if rel_path.startswith(".."): |
| return None |
| src_lines, start = inspect.getsourcelines(obj) |
| end = start + len(src_lines) - 1 |
| rel_path = rel_path.replace(os.sep, "/") |
| return ( |
| f"https://github.com/NeuroTechX/moabb/blob/develop/{rel_path}#L{start}-L{end}" |
| ) |
| except Exception: |
| return None |
|
|
|
|
| def _normalize_doi(value): |
| """Normalize DOI values that may include URL prefixes.""" |
| if not value: |
| return None |
| text = str(value).strip() |
| for prefix in ( |
| "https://doi.org/", |
| "http://doi.org/", |
| "https://dx.doi.org/", |
| "http://dx.doi.org/", |
| ): |
| if text.lower().startswith(prefix): |
| return text[len(prefix) :] |
| return text |
|
|
|
|
| def _dataset_dom_id(prefix, cls_name): |
| """Return a stable DOM id fragment for a dataset class.""" |
| slug = re.sub(r"[^a-zA-Z0-9_-]+", "-", cls_name).strip("-").lower() |
| return f"{prefix}-{slug}" |
|
|
|
|
| def _is_likely_doi(value): |
| """Return True if the value matches a DOI-like pattern.""" |
| norm = _normalize_doi(value) |
| return bool(norm and _DOI_RE.match(norm)) |
|
|
|
|
| def _load_doi_cache_once(): |
| """Load local DOI cache used by tests (if present).""" |
| global _DOI_CACHE_LOADED |
| if _DOI_CACHE_LOADED: |
| return |
| _DOI_CACHE_LOADED = True |
| cache_path = os.path.join(_repo_root(), "moabb", "tests", "doi_cache.json") |
| if not os.path.exists(cache_path): |
| return |
| try: |
| with open(cache_path, encoding="utf-8") as f: |
| payload = json.load(f) |
| except Exception: |
| return |
|
|
| for key, value in payload.items(): |
| if key == "_metadata": |
| continue |
| norm = _normalize_doi(key) |
| if not norm: |
| continue |
| _DOI_METADATA_CACHE[norm.lower()] = value |
|
|
|
|
| def _resolve_doi_metadata(doi): |
| """Resolve DOI metadata from local cache, then public DOI API as fallback.""" |
| norm = _normalize_doi(doi) |
| if not norm or not _is_likely_doi(norm): |
| return None |
| key = norm.lower() |
|
|
| _load_doi_cache_once() |
| if key in _DOI_METADATA_CACHE: |
| return _DOI_METADATA_CACHE[key] |
|
|
| |
| try: |
| req = Request( |
| f"https://doi.org/{quote(norm)}", |
| headers={"Accept": "application/citeproc+json"}, |
| ) |
| with urlopen(req, timeout=4) as resp: |
| data = json.loads(resp.read().decode("utf-8", errors="replace")) |
| authors = [ |
| f"{a.get('given', '')} {a.get('family', '')}".strip() |
| for a in data.get("author", []) |
| if isinstance(a, dict) |
| ] |
| issued = data.get("issued", {}).get("date-parts", [[None]]) |
| year = issued[0][0] if issued and issued[0] and issued[0][0] else None |
| resolved = { |
| "title": data.get("title"), |
| "authors": authors, |
| "year": year, |
| "doi": norm, |
| } |
| _DOI_METADATA_CACHE[key] = resolved |
| return resolved |
| except Exception: |
| _DOI_METADATA_CACHE[key] = None |
| return None |
|
|
|
|
| def _format_resolved_citation(meta): |
| """Build a compact one-line citation string from resolved metadata.""" |
| if not meta: |
| return "" |
| title = str(meta.get("title") or "").strip().rstrip(".") |
| if len(title) > 170: |
| title = title[:167].rstrip() + "..." |
| authors = [a for a in (meta.get("authors") or []) if a] |
| year = meta.get("year") |
|
|
| author_text = "" |
| if authors: |
| surnames = [a.split()[-1] for a in authors if a.split()] |
| if len(surnames) == 1: |
| author_text = surnames[0] |
| elif len(surnames) == 2: |
| author_text = f"{surnames[0]} & {surnames[1]}" |
| elif len(surnames) > 2: |
| author_text = f"{surnames[0]} et al." |
|
|
| lead = author_text or "Citation" |
| if year: |
| lead += f" ({year})" |
| if title: |
| return f"{lead}. {title}." |
| return lead |
|
|
|
|
| def _select_preferred_paper_doi(dataset_doi, documentation_doi, associated_paper_doi): |
| """Pick the DOI that should represent the associated paper. |
| |
| Priority: |
| 1) explicit documentation.associated_paper_doi |
| 2) documentation.doi |
| 3) dataset-level doi |
| """ |
| candidates = [associated_paper_doi, documentation_doi, dataset_doi] |
| for value in candidates: |
| norm = _normalize_doi(value) |
| if norm and _is_likely_doi(norm): |
| return norm |
| for value in candidates: |
| norm = _normalize_doi(value) |
| if norm: |
| return norm |
| return None |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _get_dataset_info(obj): |
| """Try to instantiate the dataset and extract key info including metadata.""" |
| try: |
| ds = obj() |
| paradigm = getattr(ds, "paradigm", None) |
| subject_list = getattr(ds, "subject_list", None) |
| n_subjects = len(subject_list) if subject_list else None |
| default_subject = subject_list[0] if subject_list else 1 |
| n_sessions = getattr(ds, "n_sessions", None) |
| code = getattr(ds, "code", None) |
| dataset_doi = getattr(ds, "doi", None) |
| event_id = getattr(ds, "event_id", None) or {} |
| interval = getattr(ds, "interval", None) |
|
|
| |
| metadata = getattr(ds, "METADATA", None) or getattr(type(ds), "METADATA", None) |
| if metadata is None: |
| metadata = getattr(ds, "metadata", None) |
|
|
| sampling_rate = None |
| n_channels = None |
| channel_types = None |
| montage = None |
| reference = None |
| filter_range = None |
| line_freq = None |
| sensor_type = None |
| filters = None |
| n_classes = None |
| class_labels = None |
| trial_duration = None |
| n_trials_per_class = None |
| runs_per_session = None |
| sessions_per_subject = None |
| hed_tags = None |
| exp = None |
| investigators = None |
| senior_author = None |
| contact_info = None |
| institution = None |
| country = None |
| publication_year = None |
| paper_description = None |
| documentation_doi = None |
| associated_paper_doi = None |
| license_str = None |
|
|
| if metadata is not None: |
| acq = getattr(metadata, "acquisition", None) |
| if acq is not None: |
| sampling_rate = getattr(acq, "sampling_rate", None) |
| n_channels = getattr(acq, "n_channels", None) |
| channel_types = getattr(acq, "channel_types", None) |
| montage = getattr(acq, "montage", None) |
| reference = getattr(acq, "reference", None) |
| low_cut = getattr(acq, "low_cut_hz", None) |
| high_cut = getattr(acq, "high_cut_hz", None) |
| line_freq = getattr(acq, "line_freq", None) |
| sensor_type = getattr(acq, "sensor_type", None) |
| filters = getattr(acq, "filters", None) |
| if low_cut is not None or high_cut is not None: |
| low_label = "?" if low_cut is None else f"{low_cut:g}" |
| high_label = "?" if high_cut is None else f"{high_cut:g}" |
| filter_range = f"{low_label}–{high_label} Hz" |
| elif filters: |
| filter_range = str(filters) |
|
|
| exp = getattr(metadata, "experiment", None) |
| if exp is not None: |
| n_classes = getattr(exp, "n_classes", None) |
| class_labels = getattr(exp, "class_labels", None) |
| trial_duration = getattr(exp, "trial_duration", None) |
| hed_tags = getattr(exp, "hed_tags", None) |
|
|
| data_struct = getattr(metadata, "data_structure", None) |
| if data_struct is not None: |
| n_trials_per_class = getattr(data_struct, "n_trials_per_class", None) |
|
|
| runs_per_session = getattr(metadata, "runs_per_session", None) |
| sessions_per_subject = getattr(metadata, "sessions_per_subject", None) |
|
|
| doc = getattr(metadata, "documentation", None) |
| if doc is not None: |
| documentation_doi = getattr(doc, "doi", None) |
| associated_paper_doi = getattr(doc, "associated_paper_doi", None) |
| investigators = getattr(doc, "investigators", None) |
| senior_author = getattr(doc, "senior_author", None) |
| contact_info = getattr(doc, "contact_info", None) |
| institution = getattr(doc, "institution", None) |
| country = getattr(doc, "country", None) |
| publication_year = getattr(doc, "publication_year", None) |
| paper_description = getattr(doc, "description", None) |
| license_str = getattr(doc, "license", None) |
|
|
| paper_doi = _select_preferred_paper_doi( |
| dataset_doi=dataset_doi, |
| documentation_doi=documentation_doi, |
| associated_paper_doi=associated_paper_doi, |
| ) |
|
|
| |
| if n_classes is None and event_id: |
| n_classes = len(event_id) |
| if class_labels is None and event_id: |
| class_labels = list(event_id.keys()) |
| if trial_duration is None and interval is not None: |
| trial_duration = float(interval[1] - interval[0]) |
| if not hed_tags: |
| try: |
| from moabb.datasets.bids_interface import _build_hed_sidecar_annotations |
|
|
| hed_tags = _build_hed_sidecar_annotations(ds) |
| except Exception: |
| hed_tags = hed_tags or None |
|
|
| return { |
| "paradigm": paradigm, |
| "n_subjects": n_subjects, |
| "default_subject": default_subject, |
| "n_sessions": n_sessions, |
| "code": code, |
| "doi": dataset_doi, |
| "dataset_doi": dataset_doi, |
| "documentation_doi": documentation_doi, |
| "associated_paper_doi": associated_paper_doi, |
| "paper_doi": paper_doi, |
| "sampling_rate": sampling_rate, |
| "n_channels": n_channels, |
| "channel_types": channel_types, |
| "montage": montage, |
| "reference": reference, |
| "filter_range": filter_range, |
| "line_freq": line_freq, |
| "sensor_type": sensor_type, |
| "filters": filters, |
| "n_classes": n_classes, |
| "class_labels": class_labels, |
| "trial_duration": trial_duration, |
| "n_trials_per_class": n_trials_per_class, |
| "event_id": event_id, |
| "runs_per_session": runs_per_session, |
| "sessions_per_subject": sessions_per_subject, |
| "hed_tags": hed_tags, |
| "investigators": investigators, |
| "senior_author": senior_author, |
| "contact_info": contact_info, |
| "institution": institution, |
| "country": country, |
| "publication_year": publication_year, |
| "paper_description": paper_description, |
| "license": license_str, |
| } |
| except Exception: |
| return None |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _format_duration_seconds(seconds): |
| """Return a short human-readable duration string.""" |
| if seconds is None: |
| return None |
| if seconds >= 60: |
| return f"{seconds / 60:.1f} min" |
| return f"{seconds:g} s" |
|
|
|
|
| def _split_hed_top_level(hed_str): |
| """Split a HED string by top-level commas (ignoring nested groups).""" |
| if not hed_str: |
| return [] |
| parts, buf = [], [] |
| depth = 0 |
| for ch in str(hed_str): |
| if ch == "(": |
| depth += 1 |
| elif ch == ")": |
| depth = max(0, depth - 1) |
| if ch == "," and depth == 0: |
| piece = "".join(buf).strip() |
| if piece: |
| parts.append(piece) |
| buf = [] |
| else: |
| buf.append(ch) |
| piece = "".join(buf).strip() |
| if piece: |
| parts.append(piece) |
| return parts |
|
|
|
|
| def _hed_token_label(element): |
| """Extract a compact display token from a HED element.""" |
| token = str(element).strip().strip("()").strip() |
| if not token: |
| return "" |
| token = token.split(",")[0].strip() |
| if "/" in token: |
| token = token.split("/", 1)[0].strip() |
| return token |
|
|
|
|
| def _hed_element_to_tree(element): |
| """Convert a HED element into a simple tree node dict.""" |
| text = str(element).strip() |
| if not text: |
| return None |
| if text.startswith("(") and text.endswith(")"): |
| inner = text[1:-1].strip() |
| parts = _split_hed_top_level(inner) |
| if not parts: |
| return None |
| head = {"label": _hed_token_label(parts[0]), "children": []} |
| for child in parts[1:]: |
| node = _hed_element_to_tree(child) |
| if node: |
| head["children"].append(node) |
| return head |
| return {"label": _hed_token_label(text), "children": []} |
|
|
|
|
| def _render_hed_tree_lines(nodes, prefix=""): |
| """Render tree nodes as ASCII hierarchy lines.""" |
| lines = [] |
| valid_nodes = [n for n in nodes if n] |
| for i, node in enumerate(valid_nodes): |
| last = i == len(valid_nodes) - 1 |
| branch = "└─ " if last else "├─ " |
| lines.append(f"{prefix}{branch}{node['label']}") |
| if node.get("children"): |
| child_prefix = prefix + (" " if last else "│ ") |
| lines.extend(_render_hed_tree_lines(node["children"], child_prefix)) |
| return lines |
|
|
|
|
| def _extract_score_mean(cell): |
| """Parse a benchmark score string like '77.82±12.23' and return 77.82.""" |
| if cell is None: |
| return None |
| text = str(cell).strip() |
| if not text: |
| return None |
| match = re.search(r"[-+]?\d+(?:\.\d+)?", text) |
| if not match: |
| return None |
| try: |
| return float(match.group(0)) |
| except Exception: |
| return None |
|
|
|
|
| def _get_benchmark_context(cls_name): |
| """Return summary of benchmark tables containing this dataset.""" |
| if cls_name in _BENCHMARK_CONTEXT_CACHE: |
| return _BENCHMARK_CONTEXT_CACHE[cls_name] |
|
|
| root_dir = _repo_root() |
| results_dir = os.path.join(root_dir, "results") |
| col_name = f":class:`{cls_name}`" |
|
|
| entries = [] |
| for fname, label in _BENCHMARK_FILES: |
| path = os.path.join(results_dir, fname) |
| if not os.path.exists(path): |
| continue |
| try: |
| with open(path, newline="", encoding="utf-8") as f: |
| reader = csv.DictReader(f) |
| if not reader.fieldnames or col_name not in reader.fieldnames: |
| continue |
| scores = [] |
| for row in reader: |
| score = _extract_score_mean(row.get(col_name)) |
| if score is not None: |
| scores.append(score) |
| if scores: |
| mean_val = statistics.mean(scores) |
| std_val = statistics.stdev(scores) if len(scores) > 1 else 0.0 |
| entries.append( |
| { |
| "label": label, |
| "max": max(scores), |
| "median": statistics.median(scores), |
| "mean": mean_val, |
| "std": std_val, |
| "n_pipelines": len(scores), |
| } |
| ) |
| except Exception: |
| continue |
|
|
| context = {"n_tables": len(entries), "entries": entries} |
| _BENCHMARK_CONTEXT_CACHE[cls_name] = context |
| return context |
|
|
|
|
| def _estimate_relative_difficulty(info, benchmark_ctx): |
| """Estimate a coarse relative difficulty score/label.""" |
| n_classes = info.get("n_classes") |
| class_labels = info.get("class_labels") or [] |
| display_classes = len(class_labels) if class_labels else n_classes |
| n_subjects = info.get("n_subjects") |
| n_sessions = info.get("n_sessions") |
| n_channels = info.get("n_channels") |
|
|
| score = 0.0 |
| if display_classes is not None: |
| if display_classes >= 4: |
| score += 1.2 |
| elif display_classes >= 3: |
| score += 0.7 |
| if n_subjects is not None and n_subjects < 12: |
| score += 0.8 |
| if n_sessions == 1: |
| score += 0.6 |
| if n_channels is not None and n_channels < 16: |
| score += 0.5 |
|
|
| medians = [e["median"] for e in benchmark_ctx.get("entries", []) if "median" in e] |
| if medians: |
| global_median = statistics.median(medians) |
| if global_median < 70: |
| score += 0.8 |
| elif global_median < 80: |
| score += 0.4 |
| elif global_median >= 88: |
| score -= 0.4 |
|
|
| if score <= 0.6: |
| return "Low", "●○○○○" |
| if score <= 1.4: |
| return "Medium", "●●○○○" |
| if score <= 2.2: |
| return "Moderate", "●●●○○" |
| if score <= 3.0: |
| return "High", "●●●●○" |
| return "Very high", "●●●●●" |
|
|
|
|
| def _make_benchmark_context_html(cls_name, info): |
| """Build benchmark-context card HTML for the dataset.""" |
| ctx = _get_benchmark_context(cls_name) |
| if not ctx["entries"]: |
| return "" |
| n_subjects = info.get("n_subjects") |
| n_sessions = info.get("n_sessions") |
| sample_frame = "" |
| if n_subjects is not None and n_sessions is not None: |
| sample_frame = f"{n_subjects} subjects × {n_sessions} sessions" |
|
|
| rows = [] |
| for entry in ctx["entries"][:4]: |
| stats_str = ( |
| f'Max {entry["max"]:.2f} · ' |
| f'Median {entry["median"]:.2f} · ' |
| f'Mean {entry["mean"]:.2f} · ' |
| f'Std {entry["std"]:.2f}' |
| ) |
| rows.append( |
| "<li>" |
| f'<span>{escape(entry["label"])} ' |
| f'<em>{entry["n_pipelines"]} pipelines</em></span>' |
| f'<strong class="ds-bench-stats">{stats_str}</strong>' |
| "</li>" |
| ) |
| rows_html = "\n ".join(rows) |
| return ( |
| '<div class="ds-benchmark-context">' |
| '<div class="ds-benchmark-head">' |
| '<p class="ds-benchmark-title">Benchmark Context</p>' |
| '<span class="ds-eval-pill">WithinSession</span>' |
| "</div>" |
| f'<p class="ds-benchmark-summary">Included in {ctx["n_tables"]} MOABB benchmark table(s). ' |
| "Scores are across available pipelines (WithinSession accuracy).</p>" |
| f'<p class="ds-benchmark-meta"><span><strong>Sample frame:</strong> {escape(sample_frame or "N/A")}</span></p>' |
| f"<ul>{rows_html}</ul>" |
| "</div>" |
| ) |
|
|
|
|
| def _make_citation_impact_html( |
| info, |
| benchmark_ctx, |
| *, |
| live_citations=True, |
| pageview_counts=None, |
| pageview_rank=None, |
| pageview_meta=None, |
| ): |
| """Build a compact citation, impact, and visibility block.""" |
| code = str(info.get("code") or "") |
| paper_doi = _normalize_doi(info.get("paper_doi") or info.get("doi")) |
| dataset_doi = _normalize_doi(info.get("dataset_doi") or info.get("doi")) |
| if not code and not paper_doi and not dataset_doi: |
| return "" |
|
|
| items = [] |
| script_html = "" |
| if paper_doi: |
| doi_link_href = escape(f"https://doi.org/{quote(paper_doi, safe='')}", quote=True) |
| items.append( |
| f'<li><span>Paper DOI</span><a href="{doi_link_href}" ' |
| f'target="_blank" rel="noopener">{escape(paper_doi)}</a></li>' |
| ) |
| if _is_likely_doi(paper_doi): |
| if live_citations: |
| items.append( |
| f'<li><span>Citations</span><strong class="ds-citation-count" data-doi="{escape(paper_doi)}">Loading…</strong></li>' |
| ) |
|
|
| openalex_id = quote(f"https://doi.org/{paper_doi}", safe="") |
| openalex_url = f"https://api.openalex.org/works/{openalex_id}" |
| crossref_url = f"https://api.crossref.org/works/{quote(paper_doi)}" |
| items.append( |
| "<li><span>Public API</span>" |
| f'<span class="ds-citation-links"><a href="{crossref_url}" target="_blank" rel="noopener">Crossref</a>' |
| " | " |
| f'<a href="{openalex_url}" target="_blank" rel="noopener">OpenAlex</a></span>' |
| "</li>" |
| ) |
| script_html = """ |
| <script> |
| (function () { |
| if (window.__moabbCitationCountsInit) return; |
| window.__moabbCitationCountsInit = true; |
| |
| function fmt(value) { |
| return (typeof value === "number" && Number.isFinite(value)) |
| ? value.toLocaleString() |
| : "N/A"; |
| } |
| |
| function setBoth(el, openalexCount, crossrefCount) { |
| el.textContent = "OpenAlex: " + fmt(openalexCount) + " | Crossref: " + fmt(crossrefCount); |
| } |
| |
| async function fetchOpenAlex(doi) { |
| const id = encodeURIComponent("https://doi.org/" + doi); |
| const resp = await fetch("https://api.openalex.org/works/" + id); |
| if (!resp.ok) throw new Error("OpenAlex request failed"); |
| const data = await resp.json(); |
| return data && typeof data.cited_by_count === "number" |
| ? data.cited_by_count |
| : null; |
| } |
| |
| async function fetchCrossref(doi) { |
| const resp = await fetch("https://api.crossref.org/works/" + encodeURIComponent(doi)); |
| if (!resp.ok) throw new Error("Crossref request failed"); |
| const data = await resp.json(); |
| const count = data && data.message ? data.message["is-referenced-by-count"] : null; |
| return typeof count === "number" ? count : null; |
| } |
| |
| document.querySelectorAll(".ds-citation-count[data-doi]").forEach(async function (el) { |
| const doi = (el.getAttribute("data-doi") || "").trim(); |
| if (!doi) { |
| setBoth(el, null, null); |
| return; |
| } |
| const [oaRes, crRes] = await Promise.allSettled([ |
| fetchOpenAlex(doi), |
| fetchCrossref(doi), |
| ]); |
| const oa = oaRes.status === "fulfilled" ? oaRes.value : null; |
| const cr = crRes.status === "fulfilled" ? crRes.value : null; |
| setBoth(el, oa, cr); |
| }); |
| })(); |
| </script> |
| """ |
| else: |
| doi_static_href = escape( |
| f"https://doi.org/{quote(paper_doi, safe='')}", quote=True |
| ) |
| items.append( |
| f'<li><span>Citations</span><a href="{doi_static_href}" ' |
| f'target="_blank" rel="noopener">See DOI</a></li>' |
| ) |
| if dataset_doi and dataset_doi != paper_doi: |
| data_doi_href = escape( |
| f"https://doi.org/{quote(dataset_doi, safe='')}", quote=True |
| ) |
| items.append( |
| f'<li><span>Data DOI</span><a href="{data_doi_href}" ' |
| f'target="_blank" rel="noopener">{escape(dataset_doi)}</a></li>' |
| ) |
| if benchmark_ctx and benchmark_ctx.get("n_tables"): |
| items.append( |
| f'<li><span>MOABB tables</span><strong>{benchmark_ctx["n_tables"]} (WithinSession)</strong></li>' |
| ) |
| |
| if isinstance(pageview_counts, dict) and any( |
| key in pageview_counts for key in ("last30", "all_time", "weekly_12") |
| ): |
| last30 = pageview_counts.get("last30") |
| all_time = pageview_counts.get("all_time") |
| updated_str = _format_updated_utc((pageview_meta or {}).get("generated_at_utc")) |
|
|
| |
| if ( |
| isinstance(pageview_rank, dict) |
| and pageview_rank.get("rank") |
| and pageview_rank.get("total") |
| ): |
| rank_line = ( |
| f'<div class="ds-pv-rank">#{int(pageview_rank["rank"])} of ' |
| f'{int(pageview_rank["total"])} · Top {int(pageview_rank.get("top_percent", 0))}% most viewed</div>' |
| ) |
| else: |
| rank_line = '<div class="ds-pv-rank">Ranking: n/a</div>' |
|
|
| |
| sparkline_cell = "" |
| weekly = pageview_counts.get("weekly_12") |
| if weekly: |
| sparkline_cell = ( |
| f'<div class="ds-pv-spark" aria-label="Page views trend (last 12 weeks)">' |
| f"{_sparkline_svg(weekly)}</div>" |
| ) |
|
|
| |
| pv_value = ( |
| f'<div class="ds-pv-detail">' |
| f'<div class="ds-pv-body">' |
| f'<div class="ds-pv-metrics">' |
| f"30d: <strong>{_format_count(last30)}</strong>" |
| f' <span class="ds-provenance-sep">·</span> ' |
| f"all-time: <strong>{_format_count(all_time)}</strong>" |
| f"</div>" |
| f"{rank_line}" |
| f'<div class="ds-pv-updated">Updated: {updated_str}</div>' |
| f"</div>" |
| f"{sparkline_cell}" |
| f"</div>" |
| ) |
| items.append(f'<li class="ds-pv-row"><span>Page Views</span>{pv_value}</li>') |
|
|
| if not items: |
| return "" |
|
|
| list_html = "\n ".join(items) |
| return ( |
| '<div class="ds-citation-impact">' |
| '<p class="ds-citation-title">Citation & Impact</p>' |
| f"<ul>{list_html}</ul>" |
| f"{script_html}" |
| "</div>" |
| ) |
|
|
|
|
| def _extract_description_text(lines): |
| """Extract plain description lines from docstring, skipping admonitions/directives.""" |
|
|
| def _skip_directive_block(start_idx): |
| directive_indent = len(lines[start_idx]) - len(lines[start_idx].lstrip()) |
| i = start_idx + 1 |
| while i < len(lines): |
| if lines[i].strip() == "": |
| i += 1 |
| continue |
| line_indent = len(lines[i]) - len(lines[i].lstrip()) |
| if line_indent > directive_indent: |
| i += 1 |
| continue |
| break |
| return i |
|
|
| desc = [] |
| i = 0 |
| while i < len(lines): |
| stripped = lines[i].strip() |
| |
| if stripped.startswith(".. admonition::"): |
| i = _skip_directive_block(i) |
| continue |
| |
| if stripped.startswith(".. rubric::"): |
| break |
| if stripped.startswith( |
| (".. versionadded::", ".. versionchanged::", ".. deprecated::") |
| ): |
| break |
| if stripped.startswith(".. "): |
| i = _skip_directive_block(i) |
| continue |
| |
| if ( |
| stripped.lower() in ("references", "references:") |
| and i + 1 < len(lines) |
| and set(lines[i + 1].strip()) <= {"-", "=", "~"} |
| and lines[i + 1].strip() |
| ): |
| break |
| desc.append(stripped) |
| i += 1 |
| |
| while desc and not desc[0]: |
| desc.pop(0) |
| while desc and not desc[-1]: |
| desc.pop() |
| return desc |
|
|
|
|
| def _rst_paragraph_to_html(text): |
| """Convert a paragraph of reST-like text to simple HTML. |
| |
| Handles: **bold**, *italic*, ``code``, list items (- prefix), |
| and strips footnote references like [1]_. |
| """ |
| |
| text = _RST_FOOTNOTE_RE.sub("", text) |
|
|
| |
| if " - " in text and text.lstrip().startswith("- "): |
| |
| items = _RST_LIST_SPLIT_RE.split(text) |
| items = [it.strip() for it in items if it.strip()] |
| formatted = [] |
| for item in items: |
| item = _rst_inline_to_html(item) |
| formatted.append(f"<li>{item}</li>") |
| return f'<ul class="ds-overview-list">{"".join(formatted)}</ul>' |
|
|
| return f"<p>{_rst_inline_to_html(text)}</p>" |
|
|
|
|
| def _rst_inline_to_html(text): |
| """Convert reST inline markup to HTML, escaping the rest.""" |
| parts = [] |
| pos = 0 |
| |
| for m in _RST_INLINE_RE.finditer(text): |
| |
| parts.append(escape(text[pos : m.start()])) |
| if m.group(1) is not None: |
| parts.append(f"<strong>{escape(m.group(1))}</strong>") |
| elif m.group(2) is not None: |
| parts.append(f"<code>{escape(m.group(2))}</code>") |
| elif m.group(3) is not None: |
| parts.append(f"<em>{escape(m.group(3))}</em>") |
| pos = m.end() |
| parts.append(escape(text[pos:])) |
| return "".join(parts) |
|
|
|
|
| def _make_overview_teaser_html(description_lines, cls_name): |
| """Build a collapsible overview teaser panel with key facts.""" |
| if not description_lines: |
| return "" |
|
|
| |
| all_paragraphs = [] |
| current = [] |
| ref_lines = [] |
| in_refs = False |
| for line in description_lines: |
| if re.match(r"^\.\.\s+rubric::\s*References", line): |
| in_refs = True |
| continue |
| if in_refs: |
| ref_lines.append(line) |
| continue |
| if not line: |
| if current: |
| all_paragraphs.append(" ".join(current)) |
| current = [] |
| else: |
| |
| |
| if line.startswith("- ") and current and not current[0].startswith("- "): |
| all_paragraphs.append(" ".join(current)) |
| current = [] |
| current.append(line) |
| if current: |
| all_paragraphs.append(" ".join(current)) |
|
|
| all_paragraphs = [p.strip() for p in all_paragraphs if p.strip()] |
|
|
| if not all_paragraphs: |
| return "" |
|
|
| |
| |
| TEASER_CHAR_LIMIT = 800 |
| teaser_paragraphs = [] |
| overflow_paragraphs = [] |
| char_count = 0 |
| for i, p in enumerate(all_paragraphs): |
| if char_count < TEASER_CHAR_LIMIT or i == 0: |
| teaser_paragraphs.append(p) |
| char_count += len(p) |
| else: |
| overflow_paragraphs.append(p) |
|
|
| |
| full_html_parts = [] |
| for p in overflow_paragraphs: |
| full_html_parts.append(_rst_paragraph_to_html(p)) |
|
|
| |
| ref_html = "" |
| ref_text = [r for r in ref_lines if r.strip()] |
| if ref_text: |
| ref_content = "".join(f"<p>{_rst_inline_to_html(r)}</p>" for r in ref_text) |
| ref_html = ( |
| '<details class="ds-overview-refs">' |
| "<summary>References</summary>" |
| f"{ref_content}" |
| "</details>" |
| ) |
|
|
| full_section = "" |
| if full_html_parts or ref_html: |
| full_content = "\n".join(full_html_parts) |
| full_section = ( |
| f'<div class="ds-overview-full">' f"{full_content}" f"{ref_html}" f"</div>" |
| ) |
|
|
| |
| overview_id = _dataset_dom_id("ds-overview", cls_name) |
|
|
| teaser_parts = [] |
| for p in teaser_paragraphs: |
| html = _rst_paragraph_to_html(p) |
| |
| html = html.replace("<p>", '<p class="ds-overview-text">', 1) |
| html = html.replace( |
| '<ul class="ds-overview-list">', |
| '<ul class="ds-overview-list ds-overview-text">', |
| 1, |
| ) |
| teaser_parts.append(html) |
| teaser_html = "".join(teaser_parts) |
|
|
| |
| has_overflow = bool(full_section) |
|
|
| toggle_btn = "" |
| if has_overflow: |
| toggle_btn = ( |
| f'<button class="ds-overview-toggle" type="button" ' |
| f'aria-expanded="false" aria-controls="{overview_id}" ' |
| f"onclick=\"var el=this.closest('.ds-overview-teaser');" |
| f"el.classList.toggle('ds-expanded');" |
| f"var exp=el.classList.contains('ds-expanded');" |
| f"this.setAttribute('aria-expanded',exp?'true':'false');" |
| f"this.textContent=exp?'Show less ▴':'Show more ▾';\">" |
| f"Show more ▾</button>" |
| ) |
|
|
| return ( |
| f'<div class="ds-overview-teaser">' |
| f'<p class="ds-overview-title">Overview</p>' |
| f"{teaser_html}" |
| f"{full_section}" |
| f'<div class="ds-overview-actions">' |
| f"{toggle_btn}" |
| f'<a class="ds-overview-tab-link" href="#{overview_id}" ' |
| f'onclick="event.preventDefault();' |
| f"var tab=document.querySelector('.ds-doc-tabs .sd-tab-label');" |
| f"if(tab){{tab.click();}}" |
| f"var target=document.getElementById('{overview_id}');" |
| f"if(target){{target.scrollIntoView({{behavior:'smooth',block:'start'}});}}" |
| f'">Open in Overview tab →</a>' |
| f"</div>" |
| f"</div>" |
| ) |
|
|
|
|
| def _make_hed_summary_html(info): |
| """Build HTML summary for embedded HED tags.""" |
| hed_map = info.get("hed_tags") if info else None |
| event_id = info.get("event_id") if info else None |
| event_total = len(event_id) if isinstance(event_id, dict) and event_id else None |
|
|
| if not hed_map: |
| return "" |
|
|
| items = list(hed_map.items()) |
| tagged = len(items) |
| denom = event_total if event_total else tagged |
| coverage = f"{tagged}/{denom}" |
|
|
| family_counts = {} |
| event_rows = [] |
| tree_items = [] |
| for event_name, hed_str in items: |
| elements = _split_hed_top_level(hed_str) |
| tokens = [] |
| for elem in elements: |
| t = _hed_token_label(elem) |
| if t and t not in tokens: |
| tokens.append(t) |
| for t in tokens: |
| family_counts[t] = family_counts.get(t, 0) + 1 |
| chip_html = "".join( |
| f'<span class="ds-hed-chip">{escape(tok)}</span>' for tok in tokens[:5] |
| ) |
| event_rows.append( |
| '<div class="ds-hed-event-row">' |
| f'<span class="ds-hed-event-name">{escape(str(event_name))}</span>' |
| f'<div class="ds-hed-chip-wrap" title="{escape(str(hed_str))}">{chip_html}</div>' |
| "</div>" |
| ) |
| tree_nodes = [_hed_element_to_tree(e) for e in elements] |
| tree_lines = _render_hed_tree_lines(tree_nodes) |
| tree_text = "\n".join(tree_lines) if tree_lines else "(no tree)" |
| tree_items.append( |
| '<details class="ds-hed-tree-item">' |
| f'<summary class="ds-hed-tree-summary">Tree · {escape(str(event_name))}</summary>' |
| f'<pre class="ds-hed-tree-pre">{escape(tree_text)}</pre>' |
| "</details>" |
| ) |
|
|
| top_families = sorted(family_counts.items(), key=lambda x: (-x[1], x[0]))[:6] |
| max_count = max([c for _, c in top_families], default=1) |
| bar_rows = [] |
| for fam, count in top_families: |
| width = int((count / max_count) * 100) |
| bar_rows.append( |
| '<div class="ds-hed-bar-row">' |
| f'<span class="ds-hed-bar-label">{escape(fam)}</span>' |
| f'<div class="ds-hed-bar"><i style="width:{width}%"></i></div>' |
| f"<strong>{count}</strong>" |
| "</div>" |
| ) |
|
|
| return ( |
| '<div class="ds-hed-card">' |
| '<div class="ds-hed-head">' |
| '<span class="ds-hed-pill">HED tags</span>' |
| f'<span class="ds-hed-meta">{coverage} events annotated</span>' |
| "</div>" |
| '<p class="ds-hed-source">Source: MOABB BIDS HED annotation mapping.</p>' |
| f'<div class="ds-hed-bars">{"".join(bar_rows)}</div>' |
| f'<div class="ds-hed-events">{"".join(event_rows)}</div>' |
| '<div class="ds-hed-tree-block">' |
| '<p class="ds-hed-tree-title">HED tree view</p>' |
| f'{"".join(tree_items)}' |
| "</div>" |
| "</div>" |
| ) |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _make_github_issue_url(cls_name): |
| """Build a pre-filled GitHub issue URL for this dataset.""" |
| issue_title = quote(f"[Dataset] Issue with {cls_name}") |
| issue_body = quote( |
| f"## Dataset\n\n" |
| f"- **Dataset ID:** {cls_name}\n\n" |
| f"## Issue Description\n\n" |
| f"Please describe the issue you encountered with this dataset:\n\n" |
| f"## Steps to Reproduce\n\n" |
| f"1. \n2. \n3. \n\n" |
| f"## Expected Behavior\n\n\n" |
| f"## Additional Context\n\n" |
| ) |
| url = ( |
| f"https://github.com/NeuroTechX/moabb/issues/new" |
| f"?title={issue_title}&body={issue_body}&labels=dataset" |
| ) |
| return escape(url, quote=True) |
|
|
|
|
| def _country_flag(country_str): |
| """Return a flag emoji for a country name or ISO 3166-1 alpha-2 code.""" |
| iso2 = normalize_country(country_str) |
| return _country_flag_iso(iso2) |
|
|
|
|
| def _highlight_python(code): |
| """Highlight a Python code string using Pygments, returning HTML.""" |
| from pygments import highlight as _pygments_highlight |
| from pygments.formatters import HtmlFormatter |
| from pygments.lexers import PythonLexer |
|
|
| formatter = HtmlFormatter(nowrap=False, cssclass="highlight") |
| return _pygments_highlight(code, PythonLexer(), formatter) |
|
|
|
|
| def _load_dataset_pageviews(srcdir): |
| """Load GA4 dataset page views snapshot from docs static assets.""" |
| global _DATASET_PAGEVIEWS_CACHE, _DATASET_PAGEVIEWS_CACHE_SRC |
| if _DATASET_PAGEVIEWS_CACHE is not None and _DATASET_PAGEVIEWS_CACHE_SRC == srcdir: |
| return _DATASET_PAGEVIEWS_CACHE |
|
|
| snapshot_path = os.path.join(srcdir, "_static", "analytics", "pageviews.json") |
| payload = { |
| "generated_at_utc": "", |
| "status": "disabled", |
| "reason": "", |
| "counts": {}, |
| "ranks": {}, |
| } |
|
|
| def _norm_name(name): |
| return re.sub(r"[^a-z0-9]+", "", str(name).strip().lower()) |
|
|
| canonical_name_map = {} |
| try: |
| from moabb.datasets.utils import dataset_list |
|
|
| for ds_cls in dataset_list: |
| canonical_name_map[_norm_name(ds_cls.__name__)] = ds_cls.__name__ |
| except Exception: |
| canonical_name_map = {} |
|
|
| try: |
| with open(snapshot_path, encoding="utf-8") as f: |
| raw_payload = json.load(f) |
| payload["generated_at_utc"] = str(raw_payload.get("generated_at_utc", "") or "") |
| payload["status"] = str(raw_payload.get("status", "") or "disabled") |
| payload["reason"] = str(raw_payload.get("reason", "") or "") |
|
|
| raw_counts = raw_payload.get("counts", {}) |
| merged_counts = {} |
| if isinstance(raw_counts, dict): |
| for cls_name, values in raw_counts.items(): |
| if not isinstance(values, dict): |
| continue |
| canonical = canonical_name_map.get(_norm_name(cls_name), str(cls_name)) |
| entry = merged_counts.setdefault( |
| canonical, {"last30": 0, "all_time": 0, "weekly_12": [0] * 12} |
| ) |
| if "last30" in values: |
| try: |
| entry["last30"] += int(values["last30"]) |
| except (TypeError, ValueError): |
| pass |
| if "all_time" in values: |
| try: |
| entry["all_time"] += int(values["all_time"]) |
| except (TypeError, ValueError): |
| pass |
| weekly = values.get("weekly_12") |
| if isinstance(weekly, list): |
| for i, val in enumerate(weekly[:12]): |
| try: |
| entry["weekly_12"][i] += int(val) |
| except (TypeError, ValueError): |
| pass |
| payload["counts"] = merged_counts |
|
|
| ranked = sorted( |
| payload["counts"].items(), |
| key=lambda kv: (-int(kv[1].get("all_time", 0)), kv[0]), |
| ) |
| total = len(ranked) |
| ranks = {} |
| if total > 0: |
| for idx, (name, _) in enumerate(ranked, start=1): |
| ranks[name] = { |
| "rank": idx, |
| "total": total, |
| "top_percent": max(1, math.ceil((idx / total) * 100)), |
| } |
| payload["ranks"] = ranks |
| except Exception: |
| pass |
|
|
| _DATASET_PAGEVIEWS_CACHE = payload |
| _DATASET_PAGEVIEWS_CACHE_SRC = srcdir |
| return payload |
|
|
|
|
| def _get_dataset_pageview_counts(srcdir, cls_name): |
| """Return page view counts for a dataset class name (if available).""" |
| return _load_dataset_pageviews(srcdir).get("counts", {}).get(cls_name, {}) |
|
|
|
|
| def _get_dataset_pageview_rank(srcdir, cls_name): |
| """Return pageview rank metadata for a dataset class name (if available).""" |
| return _load_dataset_pageviews(srcdir).get("ranks", {}).get(cls_name, {}) |
|
|
|
|
| def _get_dataset_pageview_meta(srcdir): |
| """Return GA pageview snapshot metadata.""" |
| payload = _load_dataset_pageviews(srcdir) |
| return { |
| "generated_at_utc": payload.get("generated_at_utc", ""), |
| "status": payload.get("status", ""), |
| "reason": payload.get("reason", ""), |
| } |
|
|
|
|
| def _format_count(value): |
| """Return a thousands-separated integer string, or 'n/a'.""" |
| try: |
| return f"{int(value):,}" |
| except (TypeError, ValueError): |
| return "n/a" |
|
|
|
|
| def _format_updated_utc(iso_text): |
| """Format ISO timestamp into YYYY-MM-DD UTC.""" |
| if not iso_text: |
| return "n/a" |
| try: |
| parsed = datetime.fromisoformat(str(iso_text).replace("Z", "+00:00")) |
| parsed = parsed.astimezone(timezone.utc) |
| return parsed.strftime("%Y-%m-%d UTC") |
| except Exception: |
| return "n/a" |
|
|
|
|
| def _sparkline_svg(values): |
| """Return an inline SVG sparkline for a sequence of numeric values.""" |
| if not isinstance(values, list) or len(values) < 2: |
| return "" |
| nums = [] |
| for val in values[:12]: |
| try: |
| nums.append(max(0, int(val))) |
| except (TypeError, ValueError): |
| nums.append(0) |
| if len(nums) < 2: |
| return "" |
|
|
| width, height = 110, 28 |
| pad = 2 |
| min_y = pad |
| max_y = height - pad |
| max_val = max(nums) if nums else 0 |
| denom = max_val if max_val > 0 else 1 |
| step = (width - 2 * pad) / (len(nums) - 1) |
|
|
| points = [] |
| for i, val in enumerate(nums): |
| x = pad + i * step |
| y = max_y - ((val / denom) * (max_y - min_y)) |
| points.append((x, y)) |
|
|
| line_points = " ".join(f"{x:.2f},{y:.2f}" for x, y in points) |
| area_path = ( |
| f"M {points[0][0]:.2f} {max_y:.2f} " |
| + " ".join(f"L {x:.2f} {y:.2f}" for x, y in points) |
| + f" L {points[-1][0]:.2f} {max_y:.2f} Z" |
| ) |
| return ( |
| '<svg class="ds-views-spark" viewBox="0 0 110 28" ' |
| 'role="img" aria-label="Weekly page views over the last 12 weeks">' |
| f'<path class="ds-views-spark-area" d="{area_path}"></path>' |
| f'<polyline class="ds-views-spark-line" points="{line_points}"></polyline>' |
| "</svg>" |
| ) |
|
|
|
|
| def _make_provenance_html(info): |
| """Build the author provenance byline block for the card header.""" |
| investigators = info.get("investigators") or [] |
| senior_author = info.get("senior_author") |
| contact_info = info.get("contact_info") or [] |
| institution = info.get("institution") |
| country = info.get("country") |
| publication_year = info.get("publication_year") |
|
|
| if not investigators and not senior_author: |
| return "" |
|
|
| |
| senior_lower = (senior_author or "").strip().lower() |
| author_spans = [] |
| for name in investigators: |
| safe = escape(name) |
| if name.strip().lower() == senior_lower: |
| author_spans.append( |
| f'<span class="ds-author-name ds-author-senior">{safe}</span>' |
| ) |
| else: |
| author_spans.append(f'<span class="ds-author-name">{safe}</span>') |
|
|
| authors_line = "" |
| if author_spans: |
| authors_line = ( |
| '<p class="ds-authors">' |
| '<span class="ds-authors-label">Authors</span>' |
| f'{", ".join(author_spans)}' |
| "</p>" |
| ) |
|
|
| |
| meta_parts = [] |
| if institution: |
| flag = _country_flag(country) if country else "" |
| flag_prefix = f"{flag}\u2002" if flag else "" |
| inst_str = f"{flag_prefix}{escape(institution)}" |
| if country: |
| inst_str += f", {escape(country)}" |
| meta_parts.append(f"<span>{inst_str}</span>") |
| if publication_year: |
| meta_parts.append(f"<span>{int(publication_year)}</span>") |
| if contact_info: |
| email = contact_info[0] |
| safe_email = escape(email) |
| meta_parts.append(f'<a href="mailto:{safe_email}">{safe_email}</a>') |
|
|
| meta_line = "" |
| if meta_parts: |
| sep = '<span class="ds-provenance-sep">\u00b7</span>' |
| meta_line = f'<div class="ds-provenance-meta">{sep.join(meta_parts)}</div>' |
|
|
| return f'<div class="ds-provenance">{authors_line}{meta_line}</div>' |
|
|
|
|
| def _make_header_html( |
| cls_name, |
| info, |
| source_url=None, |
| *, |
| live_citations=True, |
| pageview_counts=None, |
| pageview_rank=None, |
| pageview_meta=None, |
| description_lines=None, |
| ): |
| """Build the enhanced dataset card HTML (Layer 1).""" |
| paradigm = info.get("paradigm") or "unknown" |
| label = _PARADIGM_LABELS.get(paradigm, paradigm.title()) |
| color = _PARADIGM_COLORS.get(paradigm, "#546E7A") |
| n_subj = info.get("n_subjects") |
| n_sess = info.get("n_sessions") |
| paper_doi = _normalize_doi(info.get("paper_doi") or info.get("doi")) |
| sampling_rate = info.get("sampling_rate") |
| n_channels = info.get("n_channels") |
| channel_types = info.get("channel_types") |
| n_classes = info.get("n_classes") |
| class_labels = info.get("class_labels") |
| trial_duration = info.get("trial_duration") |
| default_subject = info.get("default_subject", 1) |
| subject_literal = repr(default_subject) |
| code = info.get("code") |
| quickstart_id = _dataset_dom_id("ds-quickstart", cls_name) |
| quickstart_btn_id = _dataset_dom_id("ds-quickstart-btn", cls_name) |
| source_html = "" |
| if source_url: |
| source_html = ( |
| f'<a class="ds-card-source" href="{escape(source_url)}" ' |
| f'target="_blank" rel="noopener">[source]</a>' |
| ) |
|
|
| |
| |
| display_n_classes = n_classes |
| if class_labels: |
| display_n_classes = len(class_labels) |
| subtitle_parts = [label] |
| if display_n_classes is not None: |
| subtitle_parts.append(f"{display_n_classes} classes") |
| if class_labels and len(class_labels) <= 6: |
| safe_labels = [escape(str(lbl)) for lbl in class_labels[:6]] |
| subtitle_parts.append("(" + " vs ".join(safe_labels) + ")") |
| subtitle = ", ".join(subtitle_parts[:2]) |
| if len(subtitle_parts) > 2: |
| subtitle += " " + subtitle_parts[2] |
|
|
| |
| chips = [] |
| chips.append(f'<span class="ds-chip" style="--chip-color: {color}">{label}</span>') |
| if code: |
| chips.append(f'<span class="ds-chip ds-chip-muted">Code: {code}</span>') |
| if n_subj is not None: |
| chips.append(f'<span class="ds-chip ds-chip-muted">{n_subj} subjects</span>') |
| if n_sess is not None: |
| sess_label = "session" if n_sess == 1 else "sessions" |
| chips.append(f'<span class="ds-chip ds-chip-muted">{n_sess} {sess_label}</span>') |
|
|
| |
| if n_channels is not None: |
| ch_detail = "" |
| if channel_types and isinstance(channel_types, dict): |
| eeg_count = channel_types.get("eeg", channel_types.get("EEG", 0)) |
| if eeg_count and eeg_count != n_channels: |
| ch_detail = f" ({eeg_count} EEG)" |
| chips.append( |
| f'<span class="ds-chip ds-chip-muted">{n_channels} ch{ch_detail}</span>' |
| ) |
|
|
| |
| if sampling_rate is not None: |
| sr_display = ( |
| f"{int(sampling_rate)}" |
| if sampling_rate == int(sampling_rate) |
| else f"{sampling_rate:g}" |
| ) |
| chips.append(f'<span class="ds-chip ds-chip-muted">{sr_display} Hz</span>') |
|
|
| |
| if display_n_classes is not None: |
| chips.append( |
| f'<span class="ds-chip ds-chip-muted">{display_n_classes} classes</span>' |
| ) |
|
|
| |
| if trial_duration is not None: |
| dur_display = ( |
| f"{trial_duration:g}" |
| if trial_duration != int(trial_duration) |
| else f"{int(trial_duration)}.0" |
| ) |
| chips.append(f'<span class="ds-chip ds-chip-muted">{dur_display} s trials</span>') |
|
|
| |
| license_raw = info.get("license") |
| license_key = _normalize_license(license_raw) |
| if license_key: |
| display_name, license_url, icon_keys = _LICENSE_INFO[license_key] |
| icons_html = "".join(_cc_icon_svg(k) for k in icon_keys) |
| if license_url: |
| chips.append( |
| f'<a class="ds-chip ds-chip-license" href="{escape(license_url)}" ' |
| f'target="_blank" rel="noopener" title="{escape(display_name)}">' |
| f"{icons_html}{escape(display_name)}</a>" |
| ) |
| else: |
| chips.append( |
| f'<span class="ds-chip ds-chip-license" title="{escape(display_name)}">' |
| f"{icons_html}{escape(display_name)}</span>" |
| ) |
|
|
| chips_html = "\n ".join(chips) |
| benchmark_html = _make_benchmark_context_html(cls_name, info) |
| benchmark_ctx = _get_benchmark_context(cls_name) |
| citation_html = _make_citation_impact_html( |
| info, |
| benchmark_ctx, |
| live_citations=live_citations, |
| pageview_counts=pageview_counts, |
| pageview_rank=pageview_rank, |
| pageview_meta=pageview_meta, |
| ) |
| compare_anchor_map = { |
| "imagery": "motor-imagery", |
| "p300": "p300-erp", |
| "erp": "p300-erp", |
| "ssvep": "ssvep", |
| "cvep": "c-vep", |
| "rstate": "resting-states", |
| } |
| compare_anchor = compare_anchor_map.get(paradigm) |
| compare_href = "../dataset_summary.html" |
| if compare_anchor: |
| compare_href += f"#{compare_anchor}" |
|
|
| |
| class_line = "" |
| if class_labels: |
| preview = ", ".join(escape(str(lbl)) for lbl in class_labels[:8]) |
| if len(class_labels) > 8: |
| preview += ", ..." |
| class_line = ( |
| f'<p class="ds-class-line"><span class="ds-class-line-label">' |
| f"Class Labels:</span> {preview}</p>" |
| ) |
|
|
| |
| actions = [] |
| |
| actions.append( |
| ( |
| f'<button id="{quickstart_btn_id}" class="ds-btn ds-btn-primary ds-btn-toggle" type="button" ' |
| f'aria-controls="{quickstart_id}" aria-expanded="false" ' |
| f"onclick=\"var el=document.getElementById('{quickstart_id}');" |
| "if(el){var expanded=this.getAttribute('aria-expanded')==='true';" |
| "var next=!expanded;" |
| "this.setAttribute('aria-expanded',next?'true':'false');" |
| "el.hidden=!next;" |
| "el.setAttribute('aria-hidden',next?'false':'true');}\">" |
| "Quickstart" |
| "</button>" |
| ) |
| ) |
| if paper_doi: |
| doi_href = escape(f"https://doi.org/{quote(paper_doi, safe='')}", quote=True) |
| actions.append( |
| f'<a class="ds-btn" href="{doi_href}" ' |
| f'target="_blank" rel="noopener">Read Paper</a>' |
| ) |
| actions.append(f'<a class="ds-btn" href="{compare_href}">Compare Similar</a>') |
| github_url = _make_github_issue_url(cls_name) |
| actions.append( |
| f'<a class="ds-btn" href="{github_url}" ' |
| f'target="_blank" rel="noopener">Report Issue</a>' |
| ) |
| actions_html = "\n ".join(actions) |
|
|
| |
| quickstart_code = ( |
| f"from moabb.datasets import {cls_name}\n\n" |
| f"dataset = {cls_name}()\n" |
| f"data = dataset.get_data(subjects=[{subject_literal}])\n" |
| f"print(data[{subject_literal}])" |
| ) |
| hl_code = _highlight_python(quickstart_code) |
| quickstart = ( |
| f'<div id="{quickstart_id}" class="ds-quickstart" role="region" ' |
| f'aria-labelledby="{quickstart_btn_id}" aria-hidden="true" hidden>\n' |
| f' <div class="ds-quickstart-code">{hl_code}</div>\n' |
| f"</div>" |
| ) |
|
|
| |
| alt_name_html = "" |
| paper_desc = info.get("paper_description") |
| if paper_desc: |
| alt_name_html = f'<p class="ds-card-alt-name">{escape(paper_desc)}</p>' |
|
|
| |
| provenance_html = _make_provenance_html(info) |
|
|
| |
| overview_teaser = _make_overview_teaser_html(description_lines or [], cls_name) |
|
|
| return f"""\ |
| <div class="ds-card" role="region" aria-label="{cls_name} dataset overview"> |
| {source_html} |
| <div class="ds-card-head"> |
| <p class="ds-card-kicker">Dataset Snapshot</p> |
| <p class="ds-card-title">{cls_name}</p> |
| {alt_name_html} |
| <p class="ds-subtitle">{subtitle}</p> |
| {provenance_html} |
| </div> |
| <div class="ds-stats"> |
| {chips_html} |
| </div> |
| {class_line} |
| <div class="ds-actions"> |
| {actions_html} |
| </div> |
| {overview_teaser} |
| {quickstart} |
| {benchmark_html} |
| {citation_html} |
| </div>""" |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _make_visual_grid_lines(cls_name, info, srcdir, docstring_lines=None): |
| """Build RST lines for the adaptive visual summary grid.""" |
| lines = [] |
| paradigm = info.get("paradigm") or "unknown" |
| paradigm_label = _PARADIGM_LABELS.get(paradigm, paradigm.title()) |
| n_classes = info.get("n_classes") |
| class_labels = info.get("class_labels") or [] |
| display_n_classes = len(class_labels) if class_labels else n_classes |
| runs_per_session = info.get("runs_per_session") |
| n_sessions = info.get("n_sessions") |
| trial_duration = info.get("trial_duration") |
| has_hed = bool(info.get("hed_tags")) if info else False |
| hed_html = _make_hed_summary_html(info) if has_hed else "" |
|
|
| |
| timeline_svg = os.path.join(srcdir, "_static", "timelines", f"{cls_name}.svg") |
|
|
| has_timeline = os.path.exists(timeline_svg) |
| |
| |
| |
| if has_timeline and docstring_lines is not None: |
| if any(".. figure::" in line for line in docstring_lines): |
| has_timeline = False |
| |
| channel_html = _make_channel_summary_html(info) |
|
|
| |
| n_items = sum([has_timeline, has_hed, bool(channel_html)]) |
| if n_items == 0: |
| if not has_timeline: |
| return [] |
|
|
| |
| n_cols = 2 if (n_items - int(has_timeline)) >= 2 else 1 |
|
|
| lines.extend( |
| [ |
| "", |
| f".. grid:: {n_cols}", |
| " :gutter: 3", |
| "", |
| ] |
| ) |
|
|
| |
| protocol_bits = [] |
| if trial_duration is not None: |
| protocol_bits.append(f"{trial_duration:g}s task window per trial") |
| if display_n_classes is not None: |
| protocol_bits.append( |
| f"{display_n_classes}-class {paradigm_label.lower()} paradigm" |
| ) |
| if runs_per_session is not None and n_sessions is not None: |
| protocol_bits.append( |
| f"{runs_per_session} runs/session across {n_sessions} sessions" |
| ) |
| protocol_note = " \u00b7 ".join(protocol_bits) |
|
|
| if has_timeline: |
| lines.extend( |
| [ |
| " .. grid-item-card:: Stimulus Protocol", |
| " :columns: 12", |
| " :class-card: ds-viz-card", |
| "", |
| f" .. image:: /_static/timelines/{cls_name}.svg", |
| " :width: 100%", |
| " :class: timeline-diagram", |
| "", |
| ] |
| ) |
| if protocol_note: |
| lines.extend( |
| [ |
| " .. raw:: html", |
| "", |
| f' <p class="ds-viz-note">{escape(protocol_note)}</p>', |
| "", |
| ] |
| ) |
|
|
| if has_hed: |
| lines.extend( |
| [ |
| " .. grid-item-card:: HED Event Tags", |
| " :class-card: ds-viz-card", |
| "", |
| " .. raw:: html", |
| "", |
| ] |
| ) |
| for hed_line in hed_html.split("\n"): |
| lines.append(f" {hed_line}") |
| lines.append("") |
|
|
| if channel_html: |
| lines.extend( |
| [ |
| " .. grid-item-card:: Channel Summary", |
| " :class-card: ds-viz-card", |
| "", |
| " .. raw:: html", |
| "", |
| ] |
| ) |
| for ch_line in channel_html.split("\n"): |
| lines.append(f" {ch_line}") |
| lines.append("") |
|
|
| |
| if has_timeline: |
| lines.extend( |
| [ |
| ".. raw:: html", |
| "", |
| ' <p class="timeline-disclaimer">' |
| "This diagram is automatically generated from MOABB metadata. " |
| "Please consult the original publication to confirm " |
| "the experimental protocol details.</p>", |
| "", |
| ] |
| ) |
|
|
| return lines |
|
|
|
|
| def _make_channel_summary_html(info): |
| """Build a small HTML card summarising channel configuration.""" |
| n_channels = info.get("n_channels") if info else None |
| channel_types = info.get("channel_types") if info else None |
| montage = info.get("montage") if info else None |
| sampling_rate = info.get("sampling_rate") if info else None |
| reference = info.get("reference") if info else None |
| filter_range = info.get("filter_range") if info else None |
| line_freq = info.get("line_freq") if info else None |
| sensor_type = info.get("sensor_type") if info else None |
|
|
| if ( |
| n_channels is None |
| and montage is None |
| and sampling_rate is None |
| and reference is None |
| and filter_range is None |
| and line_freq is None |
| and sensor_type is None |
| ): |
| return "" |
|
|
| rows = [] |
| if n_channels is not None: |
| rows.append(("Total channels", f"{float(n_channels):g}")) |
|
|
| if channel_types and isinstance(channel_types, dict): |
| sorted_types = sorted(channel_types.items(), key=lambda x: (-x[1], x[0])) |
| for ctype, count in sorted_types[:4]: |
| if str(ctype).lower() == "eeg" and sensor_type: |
| rows.append((ctype.upper(), f"{float(count):g} ({sensor_type})")) |
| else: |
| rows.append((ctype.upper(), f"{float(count):g}")) |
|
|
| if montage is not None: |
| rows.append(("Montage", "10-05" if montage == "standard_1005" else str(montage))) |
|
|
| if sampling_rate is not None: |
| sr_display = ( |
| f"{int(sampling_rate)} Hz" |
| if sampling_rate == int(sampling_rate) |
| else f"{sampling_rate:g} Hz" |
| ) |
| rows.append(("Sampling", sr_display)) |
|
|
| if reference: |
| rows.append(("Reference", str(reference))) |
|
|
| if filter_range: |
| rows.append(("Filter", str(filter_range))) |
| if line_freq is not None: |
| line_display = ( |
| f"{float(line_freq):g} Hz" |
| if isinstance(line_freq, (int, float)) |
| else str(line_freq) |
| ) |
| rows.append(("Notch / line", line_display)) |
|
|
| if not rows: |
| return "" |
|
|
| row_html = "\n".join( |
| f'<div class="ds-channel-row"><span>{escape(str(key))}</span><strong>{escape(str(val))}</strong></div>' |
| for key, val in rows |
| ) |
| return f'<div class="ds-channel-card">{row_html}</div>' |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _restructure_docstring_lines(lines, cls_name, default_subject=1): |
| """Reorganize docstring lines into a tabbed layout. |
| |
| Scans lines for section markers and groups content into: |
| - Overview (description + references) |
| - Code Examples (code snippet) |
| - Metadata (admonition cards) |
| - Notes (notes, version directives) |
| |
| Returns modified lines wrapped in sphinx-design tab-set. |
| """ |
| |
| metadata_lines = [] |
| description_lines = [] |
| reference_lines = [] |
| notes_lines = [] |
| current_bucket = "description" |
| in_admonition = False |
| admonition_indent = 0 |
|
|
| i = 0 |
| while i < len(lines): |
| line = lines[i] |
| stripped = line.strip() |
|
|
| |
| if stripped.startswith(".. admonition::"): |
| title = stripped[len(".. admonition::") :].strip() |
| metadata_titles = { |
| "Dataset summary", |
| "Participants", |
| "Equipment", |
| "Preprocessing", |
| "Data Access", |
| "Experimental Protocol", |
| } |
| if title in metadata_titles: |
| current_bucket = "metadata" |
| in_admonition = True |
| admonition_indent = len(line) - len(line.lstrip()) |
| metadata_lines.append(line) |
| i += 1 |
| continue |
| elif "Found an issue" in title: |
| |
| |
| current_bucket = "discard_feedback" |
| in_admonition = True |
| admonition_indent = len(line) - len(line.lstrip()) |
| i += 1 |
| continue |
|
|
| |
| if stripped.startswith(".. rubric::"): |
| rubric_title = stripped[len(".. rubric::") :].strip() |
| if rubric_title == "References": |
| current_bucket = "references" |
|
|
| in_admonition = False |
| reference_lines.append(line) |
| i += 1 |
| continue |
| elif rubric_title in ("Notes", "Notes:"): |
| current_bucket = "notes" |
|
|
| in_admonition = False |
| notes_lines.append(line) |
| i += 1 |
| continue |
|
|
| |
| if ( |
| stripped.startswith(".. versionadded::") |
| or stripped.startswith(".. versionchanged::") |
| or stripped.startswith(".. deprecated::") |
| ): |
| current_bucket = "notes" |
| notes_lines.append(line) |
| i += 1 |
| continue |
|
|
| |
| if in_admonition: |
| if stripped == "": |
| |
| if current_bucket == "metadata": |
| metadata_lines.append(line) |
| |
| i += 1 |
| continue |
| line_indent = len(line) - len(line.lstrip()) |
| if line_indent > admonition_indent: |
| |
| if current_bucket == "metadata": |
| metadata_lines.append(line) |
| |
| i += 1 |
| continue |
| else: |
| |
| in_admonition = False |
| current_bucket = "description" |
|
|
| |
| if current_bucket == "references": |
| |
| reference_lines.append(line) |
| elif current_bucket == "notes": |
| notes_lines.append(line) |
| elif current_bucket == "metadata": |
| metadata_lines.append(line) |
| else: |
| description_lines.append(line) |
|
|
| i += 1 |
|
|
| |
| def _strip_trailing_blanks(lst): |
| while lst and lst[-1].strip() == "": |
| lst.pop() |
| return lst |
|
|
| description_lines = _strip_trailing_blanks(description_lines) |
| metadata_lines = _strip_trailing_blanks(metadata_lines) |
| reference_lines = _strip_trailing_blanks(reference_lines) |
| notes_lines = _strip_trailing_blanks(notes_lines) |
|
|
| |
| has_metadata = bool(metadata_lines) |
| has_description = any(line.strip() for line in description_lines) |
| if not has_metadata and not has_description: |
| return None |
|
|
| def _reindent(block, base_indent): |
| """Re-indent a block of lines to a new base indentation. |
| |
| Finds the minimum indentation in the block and shifts all lines |
| so that minimum becomes ``base_indent``. Blank lines stay blank. |
| """ |
| |
| min_indent = None |
| for bline in block: |
| if bline.strip(): |
| indent = len(bline) - len(bline.lstrip()) |
| if min_indent is None or indent < min_indent: |
| min_indent = indent |
| if min_indent is None: |
| min_indent = 0 |
|
|
| out = [] |
| for bline in block: |
| if not bline.strip(): |
| out.append("") |
| else: |
| |
| current_indent = len(bline) - len(bline.lstrip()) |
| extra = current_indent - min_indent |
| out.append(" " * (base_indent + extra) + bline.lstrip()) |
| return out |
|
|
| |
| TAB_INDENT = 6 |
|
|
| |
| new_lines = [] |
|
|
| |
| new_lines.append("") |
| new_lines.append(".. tab-set::") |
| new_lines.append(" :class: ds-doc-tabs") |
| new_lines.append("") |
|
|
| |
| new_lines.append(" .. tab-item:: Overview") |
| new_lines.append("") |
| new_lines.append( |
| " " * TAB_INDENT + f".. _{_dataset_dom_id('ds-overview', cls_name)}:" |
| ) |
| new_lines.append("") |
| if description_lines: |
| new_lines.extend(_reindent(description_lines, TAB_INDENT)) |
| new_lines.append("") |
| if reference_lines: |
| new_lines.extend(_reindent(reference_lines, TAB_INDENT)) |
| new_lines.append("") |
| |
| if not description_lines and not reference_lines: |
| new_lines.append(" " * TAB_INDENT + "*No description available.*") |
| new_lines.append("") |
|
|
| |
| new_lines.append(" .. tab-item:: Code Examples") |
| new_lines.append("") |
| new_lines.append(" " * TAB_INDENT + ".. code-block:: python") |
| new_lines.append("") |
| new_lines.append(" " * (TAB_INDENT + 3) + f"from moabb.datasets import {cls_name}") |
| new_lines.append(" " * (TAB_INDENT + 3) + f"dataset = {cls_name}()") |
| subject_literal = repr(default_subject) |
| new_lines.append( |
| " " * (TAB_INDENT + 3) + f"data = dataset.get_data(subjects=[{subject_literal}])" |
| ) |
| new_lines.append(" " * (TAB_INDENT + 3) + f"print(data[{subject_literal}])") |
| new_lines.append("") |
|
|
| |
| if has_metadata: |
| new_lines.append(" .. tab-item:: Metadata") |
| new_lines.append("") |
| new_lines.extend(_reindent(metadata_lines, TAB_INDENT)) |
| new_lines.append("") |
|
|
| |
| if notes_lines: |
| new_lines.append(" .. tab-item:: Notes") |
| new_lines.append("") |
| new_lines.extend(_reindent(notes_lines, TAB_INDENT)) |
| new_lines.append("") |
|
|
| return new_lines |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _make_timeline_lines(cls_name, srcdir): |
| """Build RST lines for the timeline image + disclaimer.""" |
| svg_path = os.path.join(srcdir, "_static", "timelines", f"{cls_name}.svg") |
| if not os.path.exists(svg_path): |
| return [] |
|
|
| return [ |
| "", |
| ".. rubric:: Stimulus Protocol Timeline", |
| "", |
| f".. image:: /_static/timelines/{cls_name}.svg", |
| " :width: 100%", |
| " :class: timeline-diagram", |
| "", |
| ".. raw:: html", |
| "", |
| ' <p class="timeline-disclaimer">' |
| "This diagram is automatically generated from MOABB metadata. " |
| "Please consult the original publication to confirm " |
| "the experimental protocol details.</p>", |
| "", |
| ] |
|
|
|
|
| |
| |
| |
|
|
|
|
| def _is_autosummary_context(): |
| """Return True if we are called from autosummary's summary extraction.""" |
| import traceback |
|
|
| for frame_info in traceback.extract_stack(): |
| if "autosummary" in frame_info.filename and frame_info.name == "get_items": |
| return True |
| return False |
|
|
|
|
| def autodoc_process_docstring(app, what, name, obj, options, lines): |
| """Enhance dataset class docstrings with card, grid, and tabs.""" |
| if what != "class": |
| return |
| if not _is_concrete_dataset(obj): |
| return |
|
|
| |
| |
| if _is_autosummary_context(): |
| return |
|
|
| cls_name = obj.__name__ |
| info = _get_dataset_info(obj) |
| source_url = _get_dataset_source_url(obj) |
|
|
| |
| desc_lines = _extract_description_text(lines) |
|
|
| |
| top_block = [] |
| if info: |
| live_citations = getattr(app.config, "dataset_card_live_citations", True) |
| pageview_counts = _get_dataset_pageview_counts(app.srcdir, cls_name) |
| pageview_rank = _get_dataset_pageview_rank(app.srcdir, cls_name) |
| pageview_meta = _get_dataset_pageview_meta(app.srcdir) |
| header_html = _make_header_html( |
| cls_name, |
| info, |
| source_url=source_url, |
| live_citations=live_citations, |
| pageview_counts=pageview_counts, |
| pageview_rank=pageview_rank, |
| pageview_meta=pageview_meta, |
| description_lines=desc_lines, |
| ) |
| top_block.append(".. raw:: html") |
| top_block.append("") |
| for h_line in header_html.split("\n"): |
| top_block.append(f" {h_line}") |
| top_block.append("") |
|
|
| |
| if info: |
| grid_lines = _make_visual_grid_lines( |
| cls_name, info, app.srcdir, docstring_lines=lines |
| ) |
| top_block.extend(grid_lines) |
|
|
| |
| default_subject = info.get("default_subject", 1) if info else 1 |
| restructured = _restructure_docstring_lines( |
| lines, cls_name, default_subject=default_subject |
| ) |
| if restructured is not None: |
| |
| lines.clear() |
| lines.extend(restructured) |
|
|
| |
| for i, line in enumerate(top_block): |
| lines.insert(i, line) |
|
|
|
|
| def source_read_add_inherited(app, docname, source): |
| """Inject :inherited-members: and __init__ into dataset page RST sources. |
| |
| Auto-generated RST files from autosummary only have :members:. |
| For dataset classes we also need inherited methods (get_data, download, etc.) |
| and __init__ shown explicitly. |
| """ |
| if not docname.startswith("generated/moabb.datasets."): |
| return |
| |
| if not re.search(r"\.\. autoclass::", source[0]): |
| return |
|
|
| |
| |
| source[0] = ( |
| ":html_theme.sidebar_primary.remove:\n" |
| ":html_theme.sidebar_secondary.remove:\n\n" + source[0] |
| ) |
|
|
| |
| source[0] = source[0].replace( |
| " :members:\n", |
| " :members:\n :inherited-members:\n :show-inheritance:\n", |
| ) |
|
|
| |
| source[0] = re.sub( |
| r"(:special-members:.*)", |
| r"\1,__init__", |
| source[0], |
| ) |
|
|
|
|
| def _generate_all_svgs(app): |
| """Generate stimulus timeline SVGs. |
| |
| Runs once at the start of the Sphinx build (builder-inited event). |
| SVGs are written to ``_static/timelines/``. |
| |
| Controlled by the ``dataset_card_generate_svgs`` config value |
| (default ``True``). When ``False``, SVG generation is skipped entirely. |
| Existing SVG files are never overwritten. |
| """ |
| if not getattr(app.config, "dataset_card_generate_svgs", True): |
| return |
|
|
| import traceback |
|
|
| srcdir = app.srcdir |
| timeline_dir = os.path.join(srcdir, "_static", "timelines") |
| os.makedirs(timeline_dir, exist_ok=True) |
|
|
| try: |
| from moabb.analysis.timeline import stimulus_timeline_svg |
| from moabb.datasets.utils import dataset_list |
| except ImportError: |
| traceback.print_exc() |
| print( |
| "[dataset_timeline_ext] Could not import timeline functions. " |
| "Make sure moabb is installed from the current repo." |
| ) |
| return |
|
|
| for ds_cls in dataset_list: |
| name = ds_cls.__name__ |
| try: |
| ds = ds_cls() |
| except Exception: |
| continue |
|
|
| |
| timeline_path = os.path.join(timeline_dir, f"{name}.svg") |
| if not os.path.exists(timeline_path): |
| try: |
| svg = stimulus_timeline_svg(ds) |
| with open(timeline_path, "w", encoding="utf-8") as f: |
| f.write(svg) |
| except Exception: |
| pass |
|
|
|
|
| def setup(app): |
| app.add_config_value("dataset_card_live_citations", True, "html") |
| app.add_config_value("dataset_card_generate_svgs", True, "html") |
| app.connect("builder-inited", _generate_all_svgs) |
| app.connect("autodoc-process-docstring", autodoc_process_docstring) |
| app.connect("source-read", source_read_add_inherited) |
| return {"version": "1.0", "parallel_read_safe": True} |
|
|