""" ======================================= Within Session P300 with Learning Curve ======================================= This example shows how to perform a within session analysis while also creating learning curves for a P300 dataset. We will compare two pipelines : - Riemannian geometry with Linear Discriminant Analysis - XDAWN and Linear Discriminant Analysis We will use the P300 paradigm, which uses the AUC as metric. """ # Authors: Jan Sosulski # # License: BSD (3-clause) import warnings import matplotlib.pyplot as plt import numpy as np import seaborn as sns from mne.decoding import Vectorizer from pyriemann.estimation import XdawnCovariances from pyriemann.spatialfilters import Xdawn from pyriemann.tangentspace import TangentSpace from sklearn.discriminant_analysis import LinearDiscriminantAnalysis as LDA from sklearn.pipeline import make_pipeline import moabb from moabb.datasets import BNCI2014_009 from moabb.evaluations import WithinSessionEvaluation from moabb.evaluations.splitters import LearningCurveSplitter from moabb.paradigms import P300 # getting rid of the warnings about the future (on s'en fout !) warnings.simplefilter(action="ignore", category=FutureWarning) warnings.simplefilter(action="ignore", category=RuntimeWarning) moabb.set_log_level("info") ############################################################################## # Create Pipelines # ---------------- # # Pipelines must be a dict of sklearn pipeline transformer. processing_sampling_rate = 128 pipelines = {} ############################################################################## # We have to do this because the classes are called 'Target' and 'NonTarget' # but the evaluation function uses a LabelEncoder, transforming them # to 0 and 1 labels_dict = {"Target": 1, "NonTarget": 0} # Riemannian geometry based classification pipelines["RG+LDA"] = make_pipeline( XdawnCovariances(nfilter=5, estimator="lwf", xdawn_estimator="scm"), TangentSpace(), LDA(solver="lsqr", shrinkage="auto"), ) pipelines["Xdw+LDA"] = make_pipeline( Xdawn(nfilter=2, estimator="scm"), Vectorizer(), LDA(solver="lsqr", shrinkage="auto") ) ############################################################################## # Evaluation # ---------- # # We define the paradigm (P300) and use all three datasets available for it. # The evaluation will return a DataFrame containing AUCs for each permutation # and dataset size. paradigm = P300(resample=processing_sampling_rate) dataset = BNCI2014_009() # Remove the slicing of the subject list to evaluate multiple subjects dataset.subject_list = dataset.subject_list[1:2] datasets = [dataset] overwrite = True # set to True if we want to overwrite cached results data_size = {"policy": "ratio", "value": np.geomspace(0.02, 1, 4)} # When the training data is sparse, perform more permutations than when we have a lot of data n_perms = np.floor(np.geomspace(20, 2, len(data_size["value"]))).astype(int) # Guarantee reproducibility np.random.seed(7536298) evaluation = WithinSessionEvaluation( paradigm=paradigm, datasets=datasets, cv_class=LearningCurveSplitter, cv_kwargs={"data_size": data_size, "n_perms": n_perms}, suffix="examples_lr", overwrite=overwrite, ) results = evaluation.process(pipelines) ############################################################################## # Plot Results # ------------ # # We plot the accuracy as a function of the number of training samples, for # each pipeline fig, ax = plt.subplots(facecolor="white", figsize=[8, 4]) n_subs = len(dataset.subject_list) if n_subs > 1: r = results.groupby(["pipeline", "subject", "data_size"]).mean().reset_index() else: r = results sns.pointplot(data=r, x="data_size", y="score", hue="pipeline", ax=ax, palette="Set1") errbar_meaning = "subjects" if n_subs > 1 else "permutations" title_str = f"Errorbar shows Mean-CI across {errbar_meaning}" ax.set_xlabel("Amount of training samples") ax.set_ylabel("ROC AUC") ax.set_title(title_str) fig.tight_layout() plt.show()