""" =========================== Within Session P300 =========================== This example shows how to perform a within session analysis on three different P300 datasets. We will compare two pipelines : - Riemannian geometry - XDAWN with Linear Discriminant Analysis We will use the P300 paradigm, which uses the AUC as metric. """ # Authors: Pedro Rodrigues # # License: BSD (3-clause) import warnings import matplotlib.pyplot as plt from mne.decoding import Vectorizer from pyriemann.estimation import Xdawn, XdawnCovariances from pyriemann.tangentspace import TangentSpace from sklearn.discriminant_analysis import LinearDiscriminantAnalysis as LDA from sklearn.pipeline import make_pipeline import moabb import moabb.analysis.plotting as moabb_plt from moabb.analysis.chance_level import chance_by_chance from moabb.datasets import BNCI2014_009 from moabb.evaluations import WithinSessionEvaluation from moabb.paradigms import P300 ############################################################################## # getting rid of the warnings about the future warnings.simplefilter(action="ignore", category=FutureWarning) warnings.simplefilter(action="ignore", category=RuntimeWarning) moabb.set_log_level("info") ############################################################################## # Create Pipelines # ---------------- # # Pipelines must be a dict of sklearn pipeline transformer. pipelines = {} ############################################################################## # We have to do this because the classes are called 'Target' and 'NonTarget' # but the evaluation function uses a LabelEncoder, transforming them # to 0 and 1 labels_dict = {"Target": 1, "NonTarget": 0} pipelines["RG+LDA"] = make_pipeline( XdawnCovariances( nfilter=2, classes=[labels_dict["Target"]], estimator="lwf", xdawn_estimator="scm" ), TangentSpace(), LDA(solver="lsqr", shrinkage="auto"), ) pipelines["Xdw+LDA"] = make_pipeline( Xdawn(nfilter=2, estimator="scm"), Vectorizer(), LDA(solver="lsqr", shrinkage="auto") ) ############################################################################## # Evaluation # ---------- # # We define the paradigm (P300) and use all three datasets available for it. # The evaluation will return a DataFrame containing a single AUC score for # each subject / session of the dataset, and for each pipeline. # # Results are saved into the database, so that if you add a new pipeline, it # will not run again the evaluation unless a parameter has changed. Results can # be overwritten if necessary. paradigm = P300(resample=128) dataset = BNCI2014_009() dataset.subject_list = dataset.subject_list[:2] datasets = [dataset] overwrite = True # set to True if we want to overwrite cached results evaluation = WithinSessionEvaluation( paradigm=paradigm, datasets=datasets, suffix="examples", overwrite=overwrite ) results = evaluation.process(pipelines) ############################################################################## # Plot Results # ---------------- # # Here we plot the results using the MOABB score plot with chance level # annotations. The P300 paradigm has 2 classes (Target / NonTarget) with # a theoretical chance level of 50%. chance_levels = chance_by_chance(results, alpha=[0.05, 0.01]) fig, _ = moabb_plt.score_plot(results, chance_level=chance_levels) plt.show()