""" ===================== Within Session SSVEP ===================== This Example shows how to perform a within-session SSVEP analysis on the MAMEM dataset 3, using a CCA pipeline. The within-session evaluation assesses the performance of a classification pipeline using a 5-fold cross-validation. The reported metric (here, accuracy) is the average of all fold. """ # Authors: Sylvain Chevallier # # License: BSD (3-clause) import warnings import matplotlib.pyplot as plt import seaborn as sns from sklearn.pipeline import make_pipeline import moabb from moabb.datasets import Kalunga2016 from moabb.evaluations import WithinSessionEvaluation from moabb.paradigms import SSVEP from moabb.pipelines import SSVEP_CCA warnings.simplefilter(action="ignore", category=FutureWarning) warnings.simplefilter(action="ignore", category=RuntimeWarning) moabb.set_log_level("info") ############################################################################### # Loading Dataset # --------------- # # Load 2 subjects of Kalunga2016 dataset subj = [1, 3] dataset = Kalunga2016() dataset.subject_list = subj ############################################################################### # Choose Paradigm # --------------- # # We select the paradigm SSVEP, applying a bandpass filter (3-15 Hz) on # the data and we keep only the first 3 classes, that is stimulation # frequency of 13Hz, 17Hz and 21Hz. paradigm = SSVEP(fmin=10, fmax=40, n_classes=3) ############################################################################## # Create Pipelines # ---------------- # # Use a Canonical Correlation Analysis classifier interval = dataset.interval freqs = paradigm.used_events(dataset) pipeline = {} pipeline["CCA"] = make_pipeline(SSVEP_CCA(n_harmonics=3)) ############################################################################## # Get Data (optional) # ------------------- # # To get access to the EEG signals downloaded from the dataset, you could # use `dataset.get_data(subjects=[subject_id])` to obtain the EEG under # MNE format, stored in a dictionary of sessions and runs. # Otherwise, `paradigm.get_data(dataset=dataset, subjects=[subject_id])` # allows to obtain the EEG data in scikit format, the labels and the meta # information. In `paradigm.get_data`, the EEG are preprocessed according # to the paradigm requirement. # sessions = dataset.get_data(subjects=[3]) # X, labels, meta = paradigm.get_data(dataset=dataset, subjects=[3]) ############################################################################## # Evaluation # ---------- # # The evaluation will return a DataFrame containing a single AUC score for # each subject and pipeline. overwrite = True # set to True if we want to overwrite cached results evaluation = WithinSessionEvaluation( paradigm=paradigm, datasets=dataset, suffix="examples", overwrite=overwrite ) results = evaluation.process(pipeline) print(results.head()) ############################################################################## # Plot Results # ---------------- # # Here we plot the results, indicating the score for each subject plt.figure() sns.barplot(data=results, y="score", x="session", hue="subject", palette="viridis") ############################################################################## # And the computation time in seconds plt.figure() ax = sns.barplot(data=results, y="time", x="session", hue="subject", palette="Reds") ax.set_ylabel("Time (s)") plt.show()