""" ============================================================= Tutorial 5: Combining Multiple Datasets into a Single Dataset ============================================================= """ # Author: Gregoire Cattan # # https://github.com/plcrodrigues/Workshop-MOABB-BCI-Graz-2019 from pyriemann.classification import MDM from pyriemann.estimation import ERPCovariances from sklearn.pipeline import make_pipeline from moabb.datasets import Cattan2019_VR from moabb.datasets.braininvaders import BI2014a from moabb.datasets.compound_dataset import CompoundDataset from moabb.datasets.utils import blocks_reps from moabb.evaluations import WithinSessionEvaluation from moabb.paradigms.p300 import P300 ############################################################################## # Initialization # -------------- # # This tutorial illustrates how to use the CompoundDataset to: # 1) Select a few subjects/sessions/runs in an existing dataset # 2) Merge two CompoundDataset into a new one # 3) ... and finally use this new dataset on a pipeline # (this steps is not specific to CompoundDataset) # # Let's define a paradigm and a pipeline for evaluation first. paradigm = P300() pipelines = {} pipelines["MDM"] = make_pipeline(ERPCovariances(estimator="lwf"), MDM(metric="riemann")) ############################################################################## # Creation a selection of subject # ------------------------------- # # We are going to great two CompoundDataset, namely CustomDataset1 & 2. # A CompoundDataset accepts a subjects_list of subjects. # It is a list of tuple. A tuple contains 4 values: # # - the original dataset # - the subject number to select # - the sessions. It can be: # # - a session name ('0') # - a list of sessions (['0', '1']) # - `None` to select all the sessions attributed to a subject # # - the runs. As for sessions, it can be a single run name, a list or `None`` (to select all runs). class CustomDataset1(CompoundDataset): def __init__(self): biVR = Cattan2019_VR(virtual_reality=True, screen_display=True) runs = blocks_reps([0, 2], [0, 1, 2, 3, 4], biVR.n_repetitions) subjects_list = [(biVR, 1, "0VR", runs), (biVR, 2, "0VR", runs)] CompoundDataset.__init__( self, subjects_list=subjects_list, code="CustomDataset1", interval=[0, 1.0] ) class CustomDataset2(CompoundDataset): def __init__(self): bi2014 = BI2014a() subjects_list = [(bi2014, 4, None, None), (bi2014, 7, None, None)] CompoundDataset.__init__( self, subjects_list=subjects_list, code="CustomDataset2", interval=[0, 1.0] ) ############################################################################## # Merging the datasets # -------------------- # # We are now going to merge the two CompoundDataset into a single one. # The implementation is straight forward. Instead of providing a list of subjects, # you should provide a list of CompoundDataset. # subjects_list = [CustomDataset1(), CustomDataset2()] class CustomDataset3(CompoundDataset): def __init__(self): subjects_list = [CustomDataset1(), CustomDataset2()] CompoundDataset.__init__( self, subjects_list=subjects_list, code="CustomDataset3", interval=[0, 1.0] ) ############################################################################## # Evaluate and display # -------------------- # # Let's use a WithinSessionEvaluation to evaluate our new dataset. # If you already new how to do this, nothing changed: # The CompoundDataset can be used as a `normal` dataset. datasets = [CustomDataset3()] evaluation = WithinSessionEvaluation( paradigm=paradigm, datasets=datasets, overwrite=False, suffix="newdataset" ) scores = evaluation.process(pipelines) print(scores)