from argparse import ArgumentParser from pathlib import Path import mne import numpy as np import pandas as pd import moabb from moabb.datasets.utils import dataset_search from moabb.utils import set_download_dir columns_name = [ "Dataset", "#Subj", "#Chan", "#Classes", "trials/events", "Window Size (s)", "Freq (Hz)", "#Session", "#Runs", "Total_trials", ] def parser_init(): parser = ArgumentParser(description="Getting the meta-information script for MOABB") parser.add_argument( "-mne_p", "--mne_data", dest="mne_data", default=Path.home() / "mne_data", type=Path, help="Folder where to save and load the datasets with mne structure.", ) return parser def process_trial_freq(trials_per_events, prdgm): """Function to process the trial frequency. Getting the median value if the paradigm is MotorImagery. Parameters ---------- trials_per_events: dict prdgm: str Returns ------- trial_freq: str """ class_per_trial = list(trials_per_events.values()) if prdgm == "imagery" or prdgm == "ssvep": return f"{int(np.median(class_per_trial))}" elif prdgm == "p300": not_target = max(trials_per_events.values()) target = min(trials_per_events.values()) return f"NT{not_target} / T {target}" def get_meta_info(dataset, dataset_name, paradigm, prdgm_name): """Function to get the meta-information of a dataset. Parameters ---------- dataset: BaseDataset Dataset object dataset_name: str Dataset name paradigm: BaseParadigm Paradigm object to process the dataset prdgm_name: str Paradigm name Returns ------- """ subjects = len(dataset.subject_list) session = dataset.n_sessions X, _, metadata = paradigm.get_data(dataset, [1], return_epochs=True) sfreq = int(X.info["sfreq"]) nchan = X.info["nchan"] runs = len(metadata["run"].unique()) classes = len(X.event_id) epoch_size = X.tmax - X.tmin trials_per_events = mne.count_events(X.events) total_trials = int(sum(trials_per_events.values())) trial_class = process_trial_freq(trials_per_events, prdgm_name) info_dataset = pd.Series( [ dataset_name, subjects, nchan, classes, trial_class, epoch_size, sfreq, session, runs, session * runs * total_trials * subjects, ], index=columns_name, ) return info_dataset if __name__ == "__main__": mne.set_log_level(False) parser = parser_init() options = parser.parse_args() mne_path = Path(options.mne_data) set_download_dir(mne_path) paradigms = {} paradigms["imagery"] = moabb.paradigms.MotorImagery() paradigms["ssvep"] = moabb.paradigms.SSVEP() paradigms["p300"] = moabb.paradigms.P300() for prdgm_name, paradigm in paradigms.items(): dataset_list = dataset_search(paradigm=prdgm_name) metainfo = [] for dataset in dataset_list: dataset_name = str(dataset).split(".")[-1].split(" ")[0] dataset_path = f"{mne_path.parent}/metainfo/metainfo_{dataset_name}.csv" if not dataset_path.exists(): print( "Trying to get the meta information from the " f"dataset {dataset} with {prdgm_name}" ) try: info_dataset = get_meta_info( dataset, dataset_name, paradigm, prdgm_name ) print( "Saving the meta information for the dataset in the file: ", dataset_path, ) info_dataset.to_csv(dataset_path) metainfo.append(info_dataset) except Exception as ex: print(f"Error with {dataset} with {prdgm_name} paradigm", end=" ") print(f"Error: {ex}") if prdgm_name == "imagery": print("Trying with the LeftRightImagery paradigm") prdgm2 = moabb.paradigms.LeftRightImagery() try: info_dataset = get_meta_info( dataset, dataset_name, prdgm2, prdgm_name ) print( "Saving the meta information for the dataset in the file: ", dataset_path, ) info_dataset.to_csv(dataset_path) metainfo.append(info_dataset) except Exception as ex: print( f"Error with {dataset} with {prdgm_name} paradigm", end=" ", ) print(f"Error: {ex}") else: print(f"Loading the meta information from {dataset_path}") info_dataset = pd.read_csv(dataset_path) metainfo.append(info_dataset) paradigm_df = pd.concat(metainfo, axis=1).T paradigm_df.columns = columns_name dataset_path = mne_path.parent / "metainfo" / f"metainfo_{dataset_name}.csv" print(f"Saving the meta information for the paradigm {dataset_path}") paradigm_df.to_csv(dataset_path, index=None)