import pickle from argparse import ArgumentParser from dataclasses import dataclass from math import isnan import pandas as pd from paperswithcode import PapersWithCodeClient from paperswithcode.models import ( EvaluationTableSyncRequest, MetricSyncRequest, ResultSyncRequest, ) @dataclass class Task: id: str name: str description: str area: str parent_task: str _metrics = {"time": "training time (s)", "carbon_emission": "CO2 Emission (g)"} def make_table(results_csv_list: list[str], metric: str): df_list = [] for results_csv in results_csv_list: df = pd.read_csv(results_csv) columns = ["score"] if "time" in df.columns: columns.append("time") if "carbon_emission" in df.columns: columns.append("carbon_emission") df = ( df.groupby(["dataset", "paradigm", "evaluation", "pipeline"])[columns] .mean() .reset_index() ) df.score = df.score * 100 columns = dict(**_metrics, score=metric) df.rename(columns=columns, inplace=True) df.paradigm = df.paradigm.replace( {"FilterBankMotorImagery": "MotorImagery", "LeftRightImagery": "MotorImagery"} ) print(df.head()) df_list.append(df) return pd.concat(df_list) def upload_subtable(client, df, dataset, task, paper, evaluated_on): kwargs = { "task": task.id, "dataset": dataset.id, "description": task.description, "external_id": f"{dataset.id}-{task.id}", "mirror_url": "http://moabb.neurotechx.com/docs/benchmark_summary.html", } print(f"Uploading {kwargs=}") # client.evaluation_create(EvaluationTableCreateRequest(**kwargs)) r = EvaluationTableSyncRequest( **kwargs, metrics=[ MetricSyncRequest(name=metric, is_loss=metric in _metrics.values()) for metric in df.columns ], results=[ ResultSyncRequest( metrics={k: str(v) for k, v in row.to_dict().items() if not isnan(v)}, paper=paper, methodology=pipeline, external_id=f"{dataset.id}-{task.id}-{pipeline}", evaluated_on=evaluated_on, # external_source_url="http://moabb.neurotechx.com/docs/benchmark_summary.html", # TODO: maybe update url with the exact row of the result ) for pipeline, row in df.iterrows() ], ) print(r) leaderboard_id = client.evaluation_synchronize(r) print(f"{leaderboard_id=}") return leaderboard_id def upload_table(client, df, datasets, tasks, paper, evaluated_on, subsubtask): gp_cols = ["dataset", "paradigm", "evaluation"] df_gp = df.groupby(gp_cols) ids = [] for (dataset_name, paradigm_name, evaluation_name), sub_df in df_gp: dataset = datasets[dataset_name] task_key = (paradigm_name, evaluation_name) if subsubtask is not None: task_key += (subsubtask,) task = tasks[task_key] id = upload_subtable( client, sub_df.set_index("pipeline").drop( columns=gp_cols ), # + list(_metrics.values())), dataset, task, paper, evaluated_on, ) ids.append(id) return ids if __name__ == "__main__": parser = ArgumentParser() parser.add_argument("token", type=str, help="PapersWithCode API token") parser.add_argument( "metric", type=str, help="Metric used in the results CSV (see PapersWithCode metrics)", ) parser.add_argument( "results_csv", type=str, help="CSV file with results to upload", nargs="+" ) parser.add_argument( "-s", "--subsubtask", type=str, default=None, help="If relevant, the type of motor imagery task (see create_datasets_and_tasks.py)", ) parser.add_argument( "-d", "--datasets", type=str, help="Pickle file created by create_datasets_and_tasks.py", default="paperswithcode_datasets_and_tasks.pickle", ) parser.add_argument( "-o", "--output", type=str, help="Pickle output file", default="paperswithcode_results.pickle", ) parser.add_argument("-p", "--paper", type=str, help="Paper URL", default="") parser.add_argument( "-e", "--evaluated_on", type=str, help="Results date YYYY-MM-DD", default="2024-04-09", ) args = parser.parse_args() with open(args.datasets, "rb") as f: datasets = pickle.load(f) summary_table = make_table(args.results_csv, metric=args.metric) client = PapersWithCodeClient(token=args.token) upload_table( client, summary_table, datasets["datasets"], datasets["tasks"], args.paper, args.evaluated_on, args.subsubtask, ) # Commands used to upload the results of the benchmark paper: # (generate a new API token, this one is expired) # python scripts/paperswithcode/upload_results.py 5a4bd76b2b66908f0b8f28fb45dd41b918d3440b AUC-ROC ../moabb_paper_plots/DATA/results_rf_Optuna.csv -s="right hand vs. feet" -d paperswithcode_datasets_and_tasks2.pickle -o test_out.pickle -p "https://arxiv.org/abs/2404.15319v1" -e=2024-04-03 # python scripts/paperswithcode/upload_results.py 5a4bd76b2b66908f0b8f28fb45dd41b918d3440b AUC-ROC ../moabb_paper_plots/DATA/results_lhrh_Optuna.csv -s="left hand vs. right hand" -d paperswithcode_datasets_and_tasks2.pickle -o test_out.pickle -p "https://arxiv.org/abs/2404.15319v1" -e=2024-04-03 # python scripts/paperswithcode/upload_results.py 5a4bd76b2b66908f0b8f28fb45dd41b918d3440b Accuracy ../moabb_paper_plots/DATA/results_All_Optuna.csv -s="all classes" -d paperswithcode_datasets_and_tasks2.pickle -o test_out.pickle -p "https://arxiv.org/abs/2404.15319v1" -e=2024-04-03 # python scripts/paperswithcode/upload_results.py 5a4bd76b2b66908f0b8f28fb45dd41b918d3440b Accuracy ../moabb_paper_plots/DATA/results_SSVEP.csv ../moabb_paper_plots/DATA/results_SSVEP_DL.csv -d paperswithcode_datasets_and_tasks2.pickle -p "https://arxiv.org/abs/2404.15319v1" -e=2024-04-03 # python scripts/paperswithcode/upload_results.py 5a4bd76b2b66908f0b8f28fb45dd41b918d3440b AUC-ROC ../moabb_paper_plots/DATA/results_P300.csv ../moabb_paper_plots/DATA/results_P300_DL.csv -d paperswithcode_datasets_and_tasks2.pickle -p "https://arxiv.org/abs/2404.15319v1" -e=2024-04-03