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71174bc | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 | // Originally, I repurposed the 3dmol.js parser for when plugins need to access
// information about atoms. But I came to realize that this is overkill. I'm now
// going to create a minimal parser for PDB and MOL2 files instead, since these
// are the formats that molmoda uses internally for protein and compound files,
// respectively. It doens't need to have a lot of functionality. It just needs
// to be light on memory.
import { EasyParserParent } from "./EasyParserParent";
import { IAtom } from "@/UI/Navigation/TreeView/TreeInterfaces";
// This is here for backwards compatibility (in case loading old molmoda file).
/**
* A parser for GLModel.
*/
export class EasyParserIAtomList extends EasyParserParent {
/**
* Load the source.
*
* @param {IAtom[]} src The source to parse.
*/
_load(src: IAtom[]): void {
this._atoms = src as IAtom[];
}
/**
* Parse an atom.
*
* @param {string} atomStr The string to parse.
* @param {number} [atomParserIndex] Optional: The 0-based index of this atom in the parser's internal list.
* @returns {IAtom | undefined} The parsed atom.
*/
_parseAtomStr(
atomStr: string,
atomParserIndex?: number
): IAtom | undefined {
return undefined;
}
}
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