molmoda / data /src /Plugins /Citations.ts
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import { IContributorCredit, IInfoPayload, ISoftwareCredit } from "./PluginInterfaces";
export interface ICitation {
title: string;
authors: string[];
journal: string;
volume: number;
issue?: number | string;
pages: string;
year: number;
}
/**
* Format a citation.
*
* @param {ICitation} citation The citation to format.
* @returns {string} The formatted citation.
*/
function formatCitation(citation: ICitation): string {
// Go through authors. Each one should have a comma. If not, throw an error.
for (const author of citation.authors) {
if (author.indexOf(",") === -1) {
throw new Error(
`Author name does not contain a comma: ${author}. Format should be LAST NAME, GIVEN NAMES.`
);
}
}
// Go through authors and make all given names a single letter, followed by a period.
for (let i = 0; i < citation.authors.length; i++) {
const author = citation.authors[i];
const commaIndex = author.indexOf(",");
const lastName = author.substring(0, commaIndex);
const givenNames = author.substring(commaIndex + 1).trim();
const givenNamesArray = givenNames.split(" ");
const newGivenNamesArray = [];
for (const givenName of givenNamesArray) {
if (givenName.length > 0) {
newGivenNamesArray.push(givenName[0] + ".");
}
}
citation.authors[i] = `${lastName}, ${newGivenNamesArray.join(" ")}`;
}
// If there is more than one author, use "et al." for all but the first
// author.
// const AuthorStr =
// citation.authors.length > 1
// ? citation.authors[0] + ", <i>et al</i>"
// : citation.authors[0];
// Make sure title ends in punctuation (.!?). If not, add period.
const lastChar = citation.title[citation.title.length - 1];
if (lastChar !== "." && lastChar !== "!" && lastChar !== "?") {
citation.title += ".";
}
// make volume string. If issue is present, add it.
let volumeString = citation.volume.toString();
if (citation.issue) {
volumeString += `(${citation.issue})`;
}
const searchStr = `"${citation.authors[0]}" "${citation.title}" "${citation.journal}" ${citation.year};${volumeString};${citation.pages}.`;
// url encode search string
const urlEncodedSearchStr = encodeURIComponent(searchStr);
const url = `https://scholar.google.com/scholar?q=${urlEncodedSearchStr}`;
// return `${AuthorStr}. ${citation.title} <i>${citation.journal}</i> ${citation.year};${volumeString};${citation.pages}.`;
// return `${AuthorStr}. <i>${citation.journal}</i> ${citation.year};${volumeString};${citation.pages}.`;
return `<a href="${url}" target="_blank"><i>${citation.journal}</i> ${citation.year};${volumeString};${citation.pages}</a>`;
}
/**
* Format a credit.
*
* @param {ISoftwareCredit | IContributorCredit} credit The credit to format.
* @returns {string[]} The formatted credit.
*/
function formatCredit(credit: ISoftwareCredit | IContributorCredit): string[] {
if (credit.citations && credit.citations.length > 0) {
// It's ISoftwareCredit
const softwareCredits: string[] = [];
for (const citation of credit.citations) {
softwareCredits.push(formatCitation(citation))
}
return softwareCredits;
}
// It's a contributor credit. Has name, and possibly url.
if (credit.name) {
if (credit.url) {
return [`<a href="${credit.url}" target="_blank">${credit.name}</a>`]
} else {
return [credit.name];
}
}
console.warn("SHOULD NEVER GET HERE!")
return [];
}
/**
* Get multiple citations as a string.
*
* @param {IInfoPayload} infoPayload The info payload. Includes
* contributor credits and
* software credits.
* @param {boolean} [extraFormatting=true] Whether to include extra
* formatting (e.g., bold, small).
* @returns {string} The citations as a string.
*/
export function citationsTxt(
infoPayload: IInfoPayload,
extraFormatting = true
): string {
const credits = [
...infoPayload.contributorCredits,
...infoPayload.softwareCredits,
]
// .filter((c) => c.citations !== undefined)
// .map((c) => c.citations)
// .reduce(
// (acc, val) => (acc as ICitation[]).concat(val as ICitation[]),
// []
// ) as ICitation[];
if (credits.length === 0) {
return "";
}
const allCredits: string[] = [];
for (const citation of credits) {
allCredits.push(...formatCredit(citation));
}
let creditStr = extraFormatting ? "<p class='mb-4'><small><b>" : "";
creditStr += (credits.length === 1 ? "Credit" : "Credits") + ":";
creditStr += extraFormatting ? "</b> " : " ";
creditStr += allCredits.join("; ") + ".";
if (extraFormatting) {
creditStr += "</small></p>";
}
return creditStr;
}