import { visualizationApi } from "@/Api/Visualization"; import { waitForCondition } from "@/Core/Utils/MiscUtils"; import type { FileInfo } from "@/FileSystem/FileInfo"; import { store } from "@/Store"; import { pushToStoreList, setStoreVar } from "@/Store/StoreExternalAccess"; import { treeNodeListDeserialize } from "@/TreeNodes/Deserializers"; import type { ITreeNode } from "@/TreeNodes/TreeNode/TreeNode"; import type { TreeNodeList } from "@/TreeNodes/TreeNodeList/TreeNodeList"; import type { ILog } from "@/UI/Panels/Log/LogUtils"; import { ViewerParent } from "@/UI/Panels/Viewer/Viewers/ViewerParent"; import { replaceAllCustomStyles } from "@/Core/Styling/StyleManager"; import { goldenLayout } from "@/UI/Layout/GoldenLayout/GoldenLayoutCommon"; import { layoutApi } from "@/Api/Layout"; import { sanitizeHtml } from "@/Core/Security/Sanitize"; import { isMobile } from "@/Core/GlobalVars"; export const molmodaStateKeysToRetain = [ "molecules", "log", "goldenLayout", "viewerVantagePoint", "projectTitle", ]; /** * Uses molmoda to parse the a molecular-model file. For molmoda-native files. * * @param {FileInfo} fileInfo The file to parse. * @returns {Promise} A promise that resolves when the file is * parsed. The promise resolves to a TreeNodeList containing the frames. Can also * resolve void. */ export async function parseUsingMolModa( fileInfo: FileInfo ): Promise { const stateFromJson = await jsonStrToState(fileInfo.contents); // Update vueX store for (const key of molmodaStateKeysToRetain) { let viewer: ViewerParent; let sanitizedLog: any = null; if (key === "log") { sanitizedLog = (stateFromJson[key] as ILog[]).map( async (logEntry) => ({ ...logEntry, message: await sanitizeHtml(logEntry.message), parameters: await sanitizeHtml(logEntry.parameters), }) ); sanitizedLog = await Promise.all(sanitizedLog); } switch (key) { case "log": pushToStoreList(key, sanitizedLog); break; case "molecules": (stateFromJson[key] as TreeNodeList).addToMainTree( null, false, true, false ); break; case "goldenLayout": if (isMobile) { break; } if (stateFromJson[key]) { setStoreVar("goldenLayout", stateFromJson[key]); if (goldenLayout) { layoutApi.setSessionLayoutActive(true); // Activate session layout mode // eslint-disable-next-line @typescript-eslint/ban-ts-comment // @ts-ignore goldenLayout.loadLayout(stateFromJson[key]); } else { console.warn( "GoldenLayout object not available to load layout state." ); } } break; case "viewerVantagePoint": setStoreVar("viewerVantagePoint", stateFromJson[key]); viewer = await visualizationApi.viewer; // TODO: Below is hackish. Only works if 3dmoljs is the viewer. // That is the only option for now, but it might change in the // future. await waitForCondition(() => { // eslint-disable-next-line @typescript-eslint/ban-ts-comment // @ts-ignore return viewer._mol3dObj !== undefined; }); viewer.setView(stateFromJson[key]); break; case "projectTitle": setStoreVar("projectTitle", stateFromJson[key] || ""); break; } } // Load custom styles if present if (stateFromJson["customSelsAndStyles"]) { replaceAllCustomStyles(stateFromJson["customSelsAndStyles"]); } fixLog(); return undefined; } /** * Sorts logs by timestamp and removes duplicates. */ function fixLog() { // Need to sort the log, make sure no duplicate keys let log = store.state["log"]; // Sort by timestampSecs log = log.sort((a: ILog, b: ILog) => { const an = a.timestampSecs as number; const bn = b.timestampSecs as number; if (an < bn) { return -1; } if (an > bn) { return 1; } return 0; }); // Remove duplicates. Let's consider timestampSecs + message + // parameters + jobId to be unique key. const newLog: ILog[] = []; const keysSeen: Set = new Set([]); for (const logItem of log) { const key = [ logItem.timestampSecs.toString(), logItem.message, logItem.parameters, logItem.jobId, ].join("-"); if (!keysSeen.has(key)) { newLog.push(logItem); keysSeen.add(key); } } setStoreVar("log", newLog); } /** * Converts a json representation of the state (uncompressed molmoda file) to a * state object. * * @param {string} jsonStr The json string. * @returns {Promise} A promise that resolves the state object. */ async function jsonStrToState(jsonStr: string): Promise { // Viewer needs to reload everything, so set viewierDirty to true in all // cases. This is a little hackish, but easier than recursing I think. jsonStr = jsonStr.replace(/"viewerDirty": *false/g, '"viewerDirty":true'); // Now convert it to an object. const obj = JSON.parse(jsonStr); /** * Recursively sanitizes titles in the object. * * @param {any} currentObj The current object to sanitize. * @returns {Promise} A promise that resolves when the sanitization is complete */ const sanitizeTitles = async function (currentObj: any) { if (!currentObj || typeof currentObj !== "object") { return; } if (Array.isArray(currentObj)) { currentObj.forEach(sanitizeTitles); } else { if (typeof currentObj.title === "string") { currentObj.title = await sanitizeHtml(currentObj.title); } if (currentObj.nodes) { await sanitizeTitles(currentObj.nodes); } } }; if (obj.molecules) { await sanitizeTitles(obj.molecules); } return treeNodeListDeserialize(obj.molecules as ITreeNode[]) .then((mols: TreeNodeList) => { obj.molecules = mols; return obj; }) .catch((err: any) => { throw err; }); }