""" Extract the CT-Chat CTViT image encoder from the upstream CT-CLIP checkpoint. The CT-Chat loader expects: CT_CHAT_MODELS / "models/CT-CLIP-Related/encoder.pth" to contain a bare CTViT state dict. The upstream CT-CLIP_v2.pt checkpoint stores those weights under the "visual_transformer." prefix, alongside text encoder and projection weights. This script strips that prefix and writes the encoder-only checkpoint. """ import argparse from pathlib import Path import torch from constants_and_path_utils import CT_CHAT_MODELS REQUIRED_ENCODER_PREFIXES = ( "spatial_rel_pos_bias.", "to_patch_emb.", "enc_spatial_transformer.", ) def looks_like_bare_encoder(state: dict) -> bool: return all( any(isinstance(key, str) and key.startswith(prefix) for key in state) for prefix in REQUIRED_ENCODER_PREFIXES ) def has_visual_transformer(state: dict) -> bool: return any( isinstance(key, str) and key.startswith("visual_transformer.") for key in state ) def extract_visual_transformer(state: dict) -> dict: extracted = { key.removeprefix("visual_transformer."): value for key, value in state.items() if isinstance(key, str) and key.startswith("visual_transformer.") } if not extracted: raise ValueError( "No visual_transformer.* keys found in CT-CLIP_v2.pt. " "Inspect the checkpoint keys before using it as the CT-Chat encoder." ) if not looks_like_bare_encoder(extracted): raise ValueError( "Extracted visual_transformer.* keys, but the result does not look " "like the CTViT encoder expected by CT-Chat." ) return extracted def load_checkpoint(path: Path) -> dict: if not path.is_file(): raise FileNotFoundError(f"Checkpoint not found: {path}") state = torch.load(path, map_location="cpu", weights_only=True) if not hasattr(state, "keys"): raise TypeError(f"Checkpoint is not dict-like: {path}") return state def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser( description="Create CT-Chat encoder.pth from CT-CLIP_v2.pt." ) parser.add_argument( "--overwrite", action="store_true", help="Overwrite encoder.pth if it already exists and is not a bare encoder.", ) return parser.parse_args() def main() -> None: args = parse_args() ct_chat_models = Path(CT_CHAT_MODELS) checkpoint_dir = ct_chat_models / "models/CT-CLIP-Related" source_path = checkpoint_dir / "CT-CLIP_v2.pt" output_path = checkpoint_dir / "encoder.pth" existing_state = None if output_path.exists(): existing_state = load_checkpoint(output_path) if looks_like_bare_encoder(existing_state): print(f"encoder.pth already exists and looks valid: {output_path}") return if not args.overwrite: raise FileExistsError( f"encoder.pth already exists but does not look like a bare CTViT " f"encoder: {output_path}\n" "Move it aside or rerun with --overwrite." ) if existing_state is not None and has_visual_transformer(existing_state): source_state = existing_state source_description = output_path else: source_state = load_checkpoint(source_path) source_description = source_path encoder_state = extract_visual_transformer(source_state) output_path.parent.mkdir(parents=True, exist_ok=True) torch.save(encoder_state, output_path) print(f"Read CT-CLIP checkpoint: {source_description}") print(f"Extracted encoder keys: {len(encoder_state)}") print(f"Wrote CT-Chat encoder: {output_path}") if __name__ == "__main__": main()