import asyncio import concurrent.futures from typing import List import torch from sklearn.metrics import f1_score from transformers import AutoTokenizer from evaluation.text_classifier_CT_pathology import CTPathologyClassifier from collections import defaultdict class CTPathologyClassifierF1Tool: def __init__(self): self.classifier = CTPathologyClassifier() self.classifier.eval() # Set to eval mode for inference self.tokenizer = AutoTokenizer.from_pretrained( "zzxslp/RadBERT-RoBERTa-4m", do_lower_case=True ) # Batching Config self.queue = asyncio.Queue() self.batch_size = 24 self.batch_timeout = 2 # 1500ms window self._worker_task = None self.executor = concurrent.futures.ThreadPoolExecutor(max_workers=1) async def ensure_worker_started(self): if self._worker_task is None or self._worker_task.done(): self._worker_task = asyncio.create_task(self.worker()) async def worker(self): loop = asyncio.get_running_loop() try: while True: # Wait for the first request first_item = await self.queue.get() batch = [first_item] # Start the timer for the batch start_time = loop.time() while len(batch) < self.batch_size: time_left = self.batch_timeout - (loop.time() - start_time) if time_left <= 0: break try: item = await asyncio.wait_for( self.queue.get(), timeout=time_left ) batch.append(item) except asyncio.TimeoutError: break # Extract data for processing gt_reports = [b[0] for b in batch] cand_reports = [b[1] for b in batch] futures = [b[2] for b in batch] try: # Run the heavy LLM scoring in the thread pool results = await loop.run_in_executor( self.executor, self.run_batch, gt_reports, cand_reports ) for res, fut in zip(results, futures): if not fut.done(): fut.set_result(res) except Exception as e: for fut in futures: if not fut.done(): fut.set_exception(e) finally: for _ in range(len(batch)): self.queue.task_done() except asyncio.CancelledError: self.executor.shutdown(wait=False) raise def run_batch(self, gt_reports: List[str], cand_reports: List[str]) -> List[float]: """Synchronous batch execution on the GPU.""" output_encodings = defaultdict(list) ground_truth_encodings = defaultdict(list) batch_size = len(cand_reports) for output, ground_truth_report in zip(cand_reports, gt_reports): out_enc = self.tokenizer( output, return_tensors="pt", max_length=512, padding="max_length", truncation=True, ) gt_enc = self.tokenizer( ground_truth_report, return_tensors="pt", max_length=512, padding="max_length", truncation=True, ) for key in gt_enc: output_encodings[key].append(out_enc[key]) ground_truth_encodings[key].append(gt_enc[key]) for key in output_encodings: output_encodings[key] = torch.cat(output_encodings[key], dim=0) ground_truth_encodings[key] = torch.cat(ground_truth_encodings[key], dim=0) batch = { "predicted": output_encodings, "ground_truth": ground_truth_encodings, } with torch.no_grad(): result = self.classifier.predict_binary(batch) result["ground_truth"] = result["ground_truth"].cpu().numpy() result["predicted"] = result["predicted"].cpu().numpy() f1_scores = [] for i in range(batch_size): f1_scores.append( f1_score( result["ground_truth"][i], result["predicted"][i], zero_division=1.0 ) ) return f1_scores # Convert to list for easier JSON serialization # --- 2. MCP Server Setup --- if __name__ == "__main__": from fastmcp import FastMCP from tool_configs import args_tools args = args_tools() mcp = FastMCP("f1_text_server", stateless_http=False) f1_tool_instance = CTPathologyClassifierF1Tool() @mcp.tool() async def f1_text_classifier_tool( ground_truth_report: str, candidate_report: str ) -> dict: """Calculate F1 score for radiology reports using batching.""" await f1_tool_instance.ensure_worker_started() loop = asyncio.get_running_loop() future = loop.create_future() # Queue the work await f1_tool_instance.queue.put( (ground_truth_report, candidate_report, future) ) try: score = await future return { "meta": None, "outputs": str(score), } except Exception as e: return {"meta": "Error", "outputs": str(e)} mcp.run(transport="http", host=args.host, port=args.port)