import torch import os import numpy as np from tqdm import tqdm import pandas as pd import argparse from utils import process_data, check_device from collections import Counter from inference_llava_mcqa import prepare_mcqa_options ''' # Description Run random and majority baselines. - Majority: Given all the ICL examples, pick the most popular ICL answer and return that as the predicted answer. - Random: Given all the ICL examples, pick one answer at random and return that as the predicted answer. ''' def parse_arguments(): parser = argparse.ArgumentParser(description="Run inference with random/majority baselines on medical dataset") parser.add_argument( "--baseline", type=str, choices=["random", "majority"], help="Baseline of interest" ) parser.add_argument( "--inference_mode", type=str, choices=["ICL"], default="ICL", help="Mode for inference: ICL (with examples)" ) parser.add_argument( "--output-dir", type=str, default="../results", help="Directory to save result files" ) parser.add_argument( "--image-dir", type=str, default="../missing_images", help="Directory containing manually downloaded images" ) parser.add_argument( "--dataset", choices=["augmented"], help="Use augmented dataset (SMMILE-augmented-050825). If not specified, uses default SMMILE-050525" ) parser.add_argument( "--task_format", type=str, choices=["open", "mcqa"], default="open", help="task format" ) return parser.parse_args() # Get HF_TOKEN from environment variable, with fallback HF_TOKEN = os.environ.get('HF_TOKEN', '') if not HF_TOKEN: raise ValueError("HF_TOKEN environment variable not set. Please set it before running this script.") def run_inference(icl_questions_with_images, inference_mode, output_dir, baseline, task_format): # Create output directory if it doesn't exist os.makedirs(output_dir, exist_ok=True) # Check if CUDA is available device = "cuda" if torch.cuda.is_available() else "cpu" check_device(device) # Prepare data for inference based on inference mode problem_ids = [chunk[0]['problem_id'] for chunk in icl_questions_with_images] final_questions = [chunk[-1]['question'] for chunk in icl_questions_with_images] true_answers = [chunk[-1]['answer'] for chunk in icl_questions_with_images] # Run inference full_responses = [] generated_answers = [] correct_options = [] # For MCQA selected_options = [] # For MCQA is_correct = [] # For MCQA for i, chunk in tqdm(enumerate(icl_questions_with_images), total=len(icl_questions_with_images)): # Prepare MCQA format if needed if task_format == "mcqa": options, correct_option = prepare_mcqa_options(chunk) correct_options.append(correct_option) if baseline == 'random': selected_option = np.random.choice([x for x in options.keys()]) elif baseline == 'majority': options_to_letters = {v: k for k,v in options.items()} icl_answers = [options_to_letters[a['answer']] for a in chunk[:-1]] selected_option = Counter(icl_answers).most_common(1)[0][0] selected_options.append(selected_option) is_correct.append(selected_option == correct_option) ans = options[selected_option] else: # For in-context learning, we need to construct a conversation with examples possible_answers = [example['answer'] for example in chunk[:-1]] if baseline=='random': ans = np.random.choice(possible_answers) elif baseline=='majority': ans = Counter(possible_answers).most_common(1)[0][0] full_responses.append(ans) generated_answers.append(ans) if task_format == "mcqa": results = pd.DataFrame({ 'problem_id': problem_ids, 'final_question': final_questions, 'true_answer': true_answers, 'correct_option': correct_options, 'selected_option': selected_options, 'is_correct': is_correct, 'generated_answer': generated_answers, 'full_response': full_responses }) output_filename = os.path.join(output_dir, f'result_{baseline}_{inference_mode}_mcqa.csv') results.to_csv(output_filename, index=False) print(f"Results saved to {output_filename}") else: # Save results results = pd.DataFrame({ 'problem_id': problem_ids, 'final_question': final_questions, 'true_answer': true_answers, 'generated_answer': generated_answers, 'full_response': full_responses }) output_filename = os.path.join(output_dir, f'result_{baseline}_{inference_mode}.csv') results.to_csv(output_filename, index=False) print(f"Results saved to {output_filename}") if __name__ == "__main__": args = parse_arguments() print(f"Running in {args.inference_mode} mode") if args.dataset == "augmented": print("This script will run analysis with augmented SMMILE dataset.") dataset_id = "smmile/SMMILE-augmented-050825" output_dir = args.output_dir + "_augmented" else: dataset_id = "smmile/SMMILE-050525" output_dir = args.output_dir data = process_data(image_dir=args.image_dir, token=HF_TOKEN, dataset_id=dataset_id) # Run inference print(f"Processing with {args.baseline} baseline approach...") run_inference(data, args.inference_mode, output_dir, args.baseline, args.task_format)