# Copyright 2020 - 2021 MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import os import shutil import time import numpy as np import torch import torch.nn.parallel import torch.utils.data.distributed from tensorboardX import SummaryWriter from torch.cuda.amp import GradScaler, autocast from utils.utils import distributed_all_gather from attacks import vafa from attacks.pgd import projected_gradient_descent_l_inf as pgd_l_inf from attacks.fgsm import fast_gradient_sign_method_l_inf as fgsm_l_inf from attacks.bim import basic_iterative_method_l_inf as bim_l_inf from attacks.gn import gaussain_noise as gn from attacks.utils import get_target_labels from attacks.vafa.compression import block_splitting_3d, block_splitting_2d import torch_dct as dct_pack from monai.data import decollate_batch import cProfile, pstats, io from pstats import SortKey def profile(func): def wrapper(*args, **kwargs): pr = cProfile.Profile() pr.enable() retval = func(*args, **kwargs) pr.disable() s = io.StringIO() sortby = SortKey.CUMULATIVE # 'cumulative' ps = pstats.Stats(pr, stream=s).sort_stats(sortby) ps.print_stats() print(s.getvalue()) return retval return wrapper def dice(x, y): intersect = np.sum(np.sum(np.sum(x * y))) y_sum = np.sum(np.sum(np.sum(y))) if y_sum == 0: return 0.0 x_sum = np.sum(np.sum(np.sum(x))) return 2 * intersect / (x_sum + y_sum) class AverageMeter(object): def __init__(self): self.reset() def reset(self): self.val = 0 self.avg = 0 self.sum = 0 self.count = 0 def update(self, val, n=1): self.val = val self.sum += val * n self.count += n self.avg = np.where(self.count > 0, self.sum / self.count, self.sum) def train_epoch(model, loader, optimizer, scaler, epoch, loss_func, args): model.train() start_time = time.time() run_loss = AverageMeter() for idx, batch_data in enumerate(loader): if isinstance(batch_data, list): data, target = batch_data else: data, target = batch_data["image"], batch_data["label"] device = torch.device(f"cuda:{args.rank}" if torch.cuda.is_available() else "cpu") data, target = data.to(device), target.to(device) # adversarial training if args.adv_training_mode: # put model into evaluation mode model.eval() # set model gradients to None for param in model.parameters(): param.grad = None images = data labels = get_targted_labels() if args.targeted else target loss_fn = loss_func if args.attack_name=="pgd": at_images = pgd_l_inf(model, images, labels, loss_fn, steps=args.steps, alpha=args.alpha, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="fgsm": at_images = fgsm_l_inf(model, images, labels, loss_fn, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="bim": at_images = bim_l_inf(model, images, labels, loss_fn, steps=args.steps, alpha=args.alpha, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="gn": at_images = gn(images, std=args.std/255, device=device, verbose=False) elif args.attack_name=="vafa-2d": VAFA_2D_Attack = vafa.VAFA_2D(model, loss_fn, batch_size=images.shape[0], q_max=args.q_max, block_size=args.block_size, verbose=False) at_images, at_labels, q_tables = VAFA_2D_Attack(images, labels) elif args.attack_name=="vafa-3d": VAFA_3D_Attack = vafa.VAFA(model, loss_fn, batch_size=images.shape[0], q_max=args.q_max, block_size=args.block_size, use_ssim_loss=args.use_ssim_loss, verbose=False) at_images, at_labels, q_tables = VAFA_3D_Attack(images, labels) else: raise ValueError(f"Attack '{args.attack_name}' is not implemented.") data = at_images # put model into training mode model.train() # set model gradients to None for param in model.parameters(): param.grad = None with autocast(enabled=args.amp): logits = model(data) loss = loss_func(logits, target) if args.amp: scaler.scale(loss).backward() scaler.step(optimizer) scaler.update() else: loss.backward() optimizer.step() if args.distributed: loss_list = distributed_all_gather([loss], out_numpy=True, is_valid=idx < loader.sampler.valid_length) run_loss.update(np.mean(np.mean(np.stack(loss_list, axis=0), axis=0), axis=0), n=args.batch_size * args.world_size) else: run_loss.update(loss.item(), n=args.batch_size) if args.rank == 0: print("Epoch: {}/{} {}/{}".format(epoch, args.max_epochs, idx, len(loader)), "Loss: {:.4f}".format(run_loss.avg), "Time: {:.2f}s".format(time.time() - start_time) ) start_time = time.time() for param in model.parameters(): param.grad = None return run_loss.avg def train_epoch_freq_reg(model, loader, optimizer, scaler, epoch, loss_func, args): model.train() start_time = time.time() run_loss = AverageMeter() for idx, batch_data in enumerate(loader): if isinstance(batch_data, list): data_clean, target_clean = batch_data else: data_clean, target_clean = batch_data["image"], batch_data["label"] device = torch.device(f"cuda:{args.rank}" if torch.cuda.is_available() else "cpu") data_clean, target_clean = data_clean.to(device), target_clean.to(device) # put model into evaluation mode model.eval() # set model gradients to None for param in model.parameters(): param.grad = None images = data_clean labels = get_targted_labels() if args.targeted else target_clean loss_fn = loss_func ## generate adversarial version of clean data if args.attack_name=="pgd": at_images = pgd_l_inf(model, images, labels, loss_fn, steps=args.steps, alpha=args.alpha, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="fgsm": at_images = fgsm_l_inf(model, images, labels, loss_fn, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="bim": at_images = bim_l_inf(model, images, labels, loss_fn, steps=args.steps, alpha=args.alpha, eps=args.eps/255, device=device, targeted=args.targeted, verbose=False) elif args.attack_name=="gn": at_images = gn(images, std=args.std/255, device=device, verbose=False) elif args.attack_name=="vafa-2d": VAFA_2D_Attack = vafa.VAFA_2D(model, loss_fn, batch_size=images.shape[0], q_max=args.q_max, block_size=args.block_size, verbose=False) at_images, at_labels, q_tables = VAFA_2D_Attack(images, labels) elif args.attack_name=="vafa-3d": VAFA_3D_Attack = vafa.VAFA(model, loss_fn, batch_size=images.shape[0], q_max=args.q_max, block_size=args.block_size, use_ssim_loss=args.use_ssim_loss, verbose=False) at_images, at_labels, q_tables = VAFA_3D_Attack(images, labels) else: raise ValueError(f"Attack '{args.attack_name}' is not implemented.") data_adv = at_images # put model into training mode model.train() for param in model.parameters(): param.grad = None with autocast(enabled=args.amp): logits_clean = model(data_clean) logits_adv = model(data_adv) loss_clean = loss_func(logits_clean, target_clean) loss_adv = loss_func(logits_adv, target_clean) # logits_clean_blocks = block_splitting_3d(logits_clean, tuple(args.block_size)) # [B, C, N_Blocks, Block_H, Block_W, Block_D] # logits_adv_blocks = block_splitting_3d(logits_adv, tuple(args.block_size) ) # [B, C, N_Blocks, Block_H, Block_W, Block_D] logits_clean_blocks = block_splitting_3d(logits_clean, (96,96,96)) # [B, C, N_Blocks, Block_H, Block_W, Block_D] logits_adv_blocks = block_splitting_3d(logits_adv, (96,96,96) ) # [B, C, N_Blocks, Block_H, Block_W, Block_D] dct_logits_clean = dct_pack.dct_3d(logits_clean_blocks, 'ortho') # 3D DCT is applied on last three dimensions dct_logits_adv = dct_pack.dct_3d(logits_adv_blocks, 'ortho') # 3D DCT is applied on last three dimensions # l1_loss = torch.sum(torch.abs(dct_logits_clean-dct_logits_adv)) l1_loss = torch.sum(torch.abs(dct_logits_clean-dct_logits_adv))/torch.abs(dct_logits_clean).sum() # normalized l1 distance loss = loss_clean + loss_adv + l1_loss if args.amp: scaler.scale(loss).backward() scaler.step(optimizer) scaler.update() else: loss.backward() optimizer.step() if args.distributed: loss_list = distributed_all_gather([loss], out_numpy=True, is_valid=idx < loader.sampler.valid_length) run_loss.update(np.mean(np.mean(np.stack(loss_list, axis=0), axis=0), axis=0), n=args.batch_size * args.world_size) else: run_loss.update(loss.item(), n=args.batch_size) if args.rank == 0: print( "Epoch: {}/{} {}/{}".format(epoch, args.max_epochs, idx, len(loader)), "Loss: {:.4f}".format(run_loss.avg), "Time: {:.2f}s".format(time.time() - start_time), ) start_time = time.time() for param in model.parameters(): param.grad = None return run_loss.avg def val_epoch(model, loader, epoch, acc_func, args, model_inferer=None, post_label=None, post_pred=None): model.eval() start_time = time.time() with torch.no_grad(): for idx, batch_data in enumerate(loader): if isinstance(batch_data, list): data, target = batch_data else: data, target = batch_data["image"], batch_data["label"] data, target = data.cuda(args.rank), target.cuda(args.rank) with autocast(enabled=args.amp): if model_inferer is not None: logits = model_inferer(data) else: logits = model(data) if not logits.is_cuda: target = target.cpu() val_labels_list = decollate_batch(target) val_labels_convert = [post_label(val_label_tensor) for val_label_tensor in val_labels_list] val_outputs_list = decollate_batch(logits) val_output_convert = [post_pred(val_pred_tensor) for val_pred_tensor in val_outputs_list] acc = acc_func(y_pred=val_output_convert, y=val_labels_convert) acc = acc.cuda(args.rank) if args.distributed: acc_list = distributed_all_gather([acc], out_numpy=True, is_valid=idx < loader.sampler.valid_length) avg_acc = np.mean([np.nanmean(l) for l in acc_list]) else: acc_list = acc.detach().cpu().numpy() avg_acc = np.mean([np.nanmean(l) for l in acc_list]) if args.rank == 0: print("Val {}/{} {}/{}".format(epoch, args.max_epochs, idx, len(loader)), "Accuracy:", avg_acc, "Time: {:.2f}s".format(time.time() - start_time)) start_time = time.time() return avg_acc def save_checkpoint(model, epoch, args, filename="model_latest.pt", best_acc=0, epoch_acc=0, optimizer=None, scheduler=None): model_state_dict = model.state_dict() if not args.distributed else model.module.state_dict() save_dict = {"epoch": epoch, "epoch_acc": epoch_acc, "best_acc": best_acc, "model_state_dict": model_state_dict} if optimizer is not None: save_dict["optimizer_state_dict"] = optimizer.state_dict() if scheduler is not None: save_dict["scheduler_state_dict"] = scheduler.state_dict() filename = os.path.join(args.logdir, filename) torch.save(save_dict, filename) print(f"\nSaving Checkpoint : {filename}") def run_training( model, train_loader, val_loader, optimizer, loss_func, acc_func, args, model_inferer=None, scheduler=None, start_epoch=0, best_acc=0, post_label=None, post_pred=None): writer = None if args.logdir is not None and args.rank == 0 and not args.debugging: writer = SummaryWriter(log_dir=args.logdir) if args.rank == 0: print(f"Writing Tensorboard logs to: {args.logdir}\n") scaler = None if args.amp: scaler = GradScaler() val_acc_max = best_acc for epoch in range(start_epoch, args.max_epochs): if args.distributed: train_loader.sampler.set_epoch(epoch) torch.distributed.barrier() print(args.rank, time.ctime(), "Epoch:", epoch) epoch_time = time.time() if args.adv_training_mode and args.freq_reg_mode: train_loss = train_epoch_freq_reg(model, train_loader, optimizer, scaler=scaler, epoch=epoch, loss_func=loss_func, args=args) else: train_loss = train_epoch(model, train_loader, optimizer, scaler=scaler, epoch=epoch, loss_func=loss_func, args=args) if args.rank == 0: print("Final Training {}/{}".format(epoch, args.max_epochs - 1), "Loss: {:.4f}".format(train_loss),"Time {:.2f}s \n".format(time.time() - epoch_time)) if args.rank == 0 and writer is not None: writer.add_scalar("train_loss", train_loss, epoch) b_new_best = False if (epoch + 1) % args.val_every == 0: if args.distributed: torch.distributed.barrier() epoch_time = time.time() val_avg_acc = val_epoch( model, val_loader, epoch=epoch, acc_func=acc_func, model_inferer=model_inferer, args=args, post_label=post_label, post_pred=post_pred) if args.rank == 0: print("Final Validation {}/{}".format(epoch, args.max_epochs - 1), "Accuracy:", val_avg_acc, "Time: {:.2f}s".format(time.time() - epoch_time)) if writer is not None: writer.add_scalar("val_acc", val_avg_acc, epoch) if val_avg_acc > val_acc_max: print("\nNew Best ({:.6f} --> {:.6f}). \n".format(val_acc_max, val_avg_acc)) val_acc_max = val_avg_acc b_new_best = True if args.rank == 0 and args.logdir is not None and args.save_checkpoint and not args.debugging: save_checkpoint(model, epoch, args, best_acc=val_acc_max, epoch_acc=val_avg_acc, filename="model_best.pt", optimizer=optimizer, scheduler=scheduler) print("\n") if args.rank == 0 and args.logdir is not None and args.save_checkpoint and not args.debugging: save_checkpoint(model, epoch, args, best_acc=val_acc_max, epoch_acc=val_avg_acc, filename="model_latest.pt", optimizer=optimizer, scheduler=scheduler) print("\n") if b_new_best: print("Copying the 'model_latest.pt' to 'model_best.pt' as new best model!!!!\n\n") shutil.copyfile(os.path.join(args.logdir, "model_latest.pt"), os.path.join(args.logdir, "model_best.pt")) if scheduler is not None: scheduler.step() print(f"\n\nTraining Finished !, Best Accuracy: {val_acc_max} , Last Accuracy: {val_avg_acc}" ) return val_acc_max