File size: 4,565 Bytes
9d54b72 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 |
FROM eclipse-temurin:17 as jre-build
# Create a custom Java runtime
RUN $JAVA_HOME/bin/jlink \
--add-modules ALL-MODULE-PATH \
--strip-debug \
--no-man-pages \
--no-header-files \
--compress=2 \
--output /javaruntime
# Define base image and copy in jlink created minimal Java 17 environment
FROM python:3.10.15-slim
ENV JAVA_HOME=/opt/java/openjdk
ENV PATH "${JAVA_HOME}/bin:${PATH}"
COPY --from=jre-build /javaruntime $JAVA_HOME
# now we have Java 17 and Python 3.9
RUN apt -y update && \
apt install -y --no-install-recommends curl dnsutils apt-utils libfreetype6 fontconfig fonts-dejavu && \
mkdir -p /usr/local/app/lib
RUN DEBIAN_FRONTEND=noninteractive apt install -y --no-install-recommends tzdata
RUN unlink /etc/localtime || true
RUN ln -s /usr/share/zoneinfo/America/New_York /etc/localtime
RUN python3 -m pip install poetry && poetry config cache-dir "/poetry/.cache"
ENV PATH="/root/.poetry/bin:/root/.local/bin:$PATH"
WORKDIR /usr/local/app
# Copy JAR files
COPY ./vcell-api/target/vcell-api-0.0.1-SNAPSHOT.jar \
./vcell-api/target/maven-jars/*.jar \
./lib/
# Copy and install vcell-cli-utils
COPY ./vcell-cli-utils/ /usr/local/app/python/vcell_cli_utils/
RUN cd /usr/local/app/python/vcell_cli_utils/ && \
poetry config cache-dir "/poetry/.cache" --local && \
chmod 755 poetry.toml && \
poetry install
# copy API resources
COPY ./vcell-api/docroot ./docroot
COPY ./vcell-api/webapp ./webapp
COPY ./vcell-api/keystore_macbook.jks .
COPY ./docker/build/vcell-api.log4j.xml .
ENV softwareVersion=SOFTWARE-VERSION-NOT-SET \
serverid=SITE \
dburl="db-url-not-set" \
dbdriver="db-driver-not-set" \
dbuser="db-user-not-set" \
jmshost_int_internal=activemqint \
jmsport_int_internal=61616 \
jmsuser=clientUser \
mongodb_host_internal=mongodb \
mongodb_port_internal=27017 \
mongodb_database=test \
jmsblob_minsize=100000 \
smtp_hostname="smtp-host-not-set" \
smtp_port="smtp-port-not-set" \
smtp_emailaddress="smtp-emailaddress-not-set" \
simdataCacheSize="simdataCacheSize-not-set" \
ssl_ignoreHostMismatch=true \
ssl_ignoreCertProblems=false \
serverPrefixV0="server-path-prefix-v0-not-set" \
protocol="https" \
submit_service_host="submit" \
workingDir="/usr/local/app"
ENV dbpswdfile=/run/secrets/dbpswd \
jmspswdfile=/run/secrets/jmspswd \
keystore=/run/secrets/keystorefile \
keystorepswdfile=/run/secrets/keystorepswd \
vcellapi_privatekeyfile=/run/secrets/apiprivkey \
vcellapi_publickeyfile=/run/secrets/apipubkey
EXPOSE 8080
EXPOSE 8000
ENTRYPOINT java \
-Xdebug -agentlib:jdwp=transport=dt_socket,address=*:8000,server=y,suspend=n \
-XX:MaxRAMPercentage=80 \
# -XX:+PrintFlagsFinal -XshowSettings:vm \
-Dvcell.softwareVersion="${softwareVersion}" \
-Djava.util.logging.manager=org.apache.logging.log4j.jul.LogManager \
-Dlog4j.configurationFile=/usr/local/app/vcell-api.log4j.xml \
-Dvcell.server.id="${serverid}" \
-Dvcell.serverPrefix.v0="${serverPrefixV0}" \
-Dvcell.installDir=/usr/local/app \
-Dcli.workingDir="${workingDir}" \
-Dvcell.server.dbConnectURL="${dburl}" \
-Dvcell.server.dbDriverName="${dbdriver}" \
-Dvcell.server.dbUserid="${dbuser}" \
-Dvcell.db.pswdfile="${dbpswdfile}" \
-Dvcell.n5DataDir.internal=/n5DataDir \
-Dvcell.primarySimdatadir.internal=/simdata \
-Dvcell.secondarySimdatadir.internal=/simdata_secondary \
-Dvcell.simdataCacheSize="${simdataCacheSize}" \
-Dvcell.jms.int.host.internal="${jmshost_int_internal}" \
-Dvcell.jms.int.port.internal="${jmsport_int_internal}" \
-Dvcell.jms.blobMessageUseMongo=true \
-Dvcell.jms.blobMessageMinSize="${jmsblob_minsize}" \
-Dvcell.jms.user="${jmsuser}" \
-Dvcell.jms.pswdfile="${jmspswdfile}" \
-Dvcell.mongodb.host.internal=${mongodb_host_internal} \
-Dvcell.mongodb.port.internal=${mongodb_port_internal} \
-Dvcell.mongodb.database=${mongodb_database} \
-Dvcellapi.keystore.file="${keystore}" \
-Dvcellapi.keystore.pswdfile="${keystorepswdfile}" \
-Dvcell.smtp.hostName="${smtp_hostname}" \
-Dvcell.smtp.port="${smtp_port}" \
-Dvcell.smtp.emailAddress="${smtp_emailaddress}" \
-Dvcell.ssl.ignoreHostMismatch="${ssl_ignoreHostMismatch}" \
-Dvcell.ssl.ignoreCertProblems="${ssl_ignoreCertProblems}" \
-Dvcell.submit.service.host="${submit_service_host}" \
-Dvcellapi.privateKey.file="${vcellapi_privatekeyfile}" \
-Dvcellapi.publicKey.file="${vcellapi_publickeyfile}" \
-cp "./lib/*" org.vcell.rest.VCellApiMain \
/usr/local/app/docroot 8080 ${protocol}
|