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FROM python:3.10-slim-bullseye
RUN apt -y update && apt -y upgrade && \
apt install -y curl
RUN mkdir -p /usr/local/app/vcell/installDir && \
mkdir -p /usr/local/app/vcell/installDir/python/vcell_opt
# don't install poetry in /root or it cannot be run from Singularity as an unprivileged user
ENV PATH="/opt/poetry/bin:$PATH"
ENV POETRY_HOME=/opt/poetry
COPY ./vcell-opt /usr/local/app/vcell/installDir/python/vcell_opt/
COPY ./docker_run.sh /usr/local/app/vcell/installDir/
RUN curl -sSL https://install.python-poetry.org | python3 - && \
cd /usr/local/app/vcell/installDir/python/vcell_opt/ && \
poetry config cache-dir "/poetry/.cache" --local && chmod 755 poetry.toml && poetry install
WORKDIR /usr/local/app/vcell/installDir/python/vcell_opt
ENTRYPOINT ["/usr/local/app/vcell/installDir/docker_run.sh"]
CMD []
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