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import filecmp
import os
from pathlib import Path
import pytest
from vcell_cli_utils import wrapper
testdata = [
("Aavani2019_BIOMD0000000876_vcell_7.5.0.27.omex",
"Aavani2019_BIOMD0000000876_vcell_7.5.0.27.report.json"),
("VerySimple_vcell_7.5.0.27.omex",
"VerySimple_vcell_7.5.0.27.report.json"),
("eungdamrong_and_Iyengar_BiophysJ_vcell_7.5.0.30.omex",
"eungdamrong_and_Iyengar_BiophysJ_vcell_7.5.0.30.report.json")
]
@pytest.mark.parametrize("input_omex,expected_report", testdata)
def test_wrapper_validate_omex(input_omex: str, expected_report: str) -> None:
temp_path: Path = Path(__file__).parent.parent
omex_file: Path = Path(__file__).parent / "fixtures" / "validation" / input_omex
expected_report_file: Path = Path(__file__).parent / "fixtures" / "validation" / expected_report
generated_report_file: Path = Path(__file__).parent / "fixtures" / "problem.report"
if generated_report_file.exists():
os.remove(generated_report_file)
wrapper.validateOmex(str(omex_file), str(temp_path), str(generated_report_file))
filecmp.clear_cache()
bSame: bool = filecmp.cmp(expected_report_file, generated_report_file, shallow=False)
assert bSame
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