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__package__ = "vcell_cli_utils"
import sys
import glob
import os
from pathlib import Path
if __name__ == "__main__":
from vcell_cli_utils import cli
else:
from . import cli
# Since file is a wrapper access point for a java program, functions will use *java* name-style conventions (camel case)
def validateOmex(omexFilePath: str, tempDirPath: str, reportJsonFilePath: str) -> None:
temp_path: Path = Path(tempDirPath) / "temp"
files = glob.glob(str(temp_path) + "/*", recursive=False)
for f in files:
os.remove(f)
cli.validate_omex(omex_file_path=omexFilePath, temp_dir_path=str(temp_path),
omex_json_report_path=reportJsonFilePath)
files = glob.glob(str(temp_path) + "/*", recursive=False)
for f in files:
os.remove(f)
try:
os.remove(temp_path)
except:
pass
def genSedml2d3d(omexFilePath: str, baseOutPath: str) -> None:
cli.gen_sedml_2d_3d(omexFilePath, baseOutPath)
def genPlotsPseudoSedml(sedmlPath: str, resultOutDir: str) -> None:
cli.gen_plots_for_sed2d_only(sedmlPath, resultOutDir)
def transposeVcmlCsv(csvFilePath: str) -> None:
cli.transpose_vcml_csv(csvFilePath)
def genPlotPdfs(sedmlPath: str, resultOutDir: str) -> None:
cli.gen_plot_pdfs(sedmlPath, resultOutDir)
if __name__ == "__main__":
args = sys.argv
# args[0] = current file
# args[1] = function name
# args[2:] = function args : (*unpacked)
globals()[args[1]](*args[2:])
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