File size: 11,423 Bytes
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<sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" level="3" spatial:required="true" version="2" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>Exported by VCell 7.3</p>
</body>
</notes>
<model areaUnits="Unit_dm2" extentUnits="Unit_umol" id="TinySpacialProject_Application0" lengthUnits="Unit_dm" name="TinySpacialProject_Application0" substanceUnits="Unit_umol" timeUnits="Unit_s" volumeUnits="Unit_l">
<spatial:geometry xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateSystem="cartesian" spatial:id="vcell">
<spatial:listOfCoordinateComponents>
<spatial:coordinateComponent spatial:id="x" spatial:type="cartesianX" spatial:unit="Unit_dm">
<spatial:boundaryMin spatial:id="Xmin" spatial:value="0.0"/>
<spatial:boundaryMax spatial:id="Xmax" spatial:value="10.0"/>
</spatial:coordinateComponent>
</spatial:listOfCoordinateComponents>
<spatial:listOfDomains>
<spatial:domain spatial:domainType="subdomain0" spatial:id="subdomain00">
<spatial:listOfInteriorPoints>
<spatial:interiorPoint spatial:coord1="0.0"/>
</spatial:listOfInteriorPoints>
</spatial:domain>
</spatial:listOfDomains>
<spatial:listOfDomainTypes>
<spatial:domainType spatial:id="subdomain0" spatial:spatialDimensions="1">
<annotation>
<vcell:SubVolumeAttributes xmlns:vcell="http://sourceforge.net/projects/vcell" vcell:handle="0" vcell:defaultBCtypeXmin="Flux" vcell:defaultBCtypeXmax="Flux"/>
</annotation>
</spatial:domainType>
</spatial:listOfDomainTypes>
<spatial:listOfGeometryDefinitions>
<spatial:analyticGeometry spatial:id="Analytic_Geometry2" spatial:isActive="true">
<annotation>
<vcell:GeometrySampling xmlns:vcell="http://sourceforge.net/projects/vcell" vcell:numX="50" vcell:cutoffFrequency="0.3"/>
</annotation>
<spatial:listOfAnalyticVolumes>
<spatial:analyticVolume spatial:domainType="subdomain0" spatial:functionType="layered" spatial:id="AnalyticVol_subdomain0" spatial:ordinal="0">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<cn> 1 </cn>
</math>
</spatial:analyticVolume>
</spatial:listOfAnalyticVolumes>
</spatial:analyticGeometry>
</spatial:listOfGeometryDefinitions>
</spatial:geometry>
<listOfUnitDefinitions>
<unitDefinition id="Unit_umol">
<listOfUnits>
<unit exponent="1" kind="mole" multiplier="1" scale="-6"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_l">
<listOfUnits>
<unit exponent="1" kind="litre" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_dm2">
<listOfUnits>
<unit exponent="2" kind="metre" multiplier="1" scale="-1"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_dm">
<listOfUnits>
<unit exponent="1" kind="metre" multiplier="1" scale="-1"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_s">
<listOfUnits>
<unit exponent="1" kind="second" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_dm2_s_1">
<listOfUnits>
<unit exponent="2" kind="metre" multiplier="1" scale="-1"/>
<unit exponent="-1" kind="second" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_umol_dm_l_1_s_1">
<listOfUnits>
<unit exponent="1" kind="mole" multiplier="1" scale="-6"/>
<unit exponent="1" kind="metre" multiplier="1" scale="-1"/>
<unit exponent="-1" kind="litre" multiplier="1" scale="0"/>
<unit exponent="-1" kind="second" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_K">
<listOfUnits>
<unit exponent="1" kind="kelvin" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit__1">
<listOfUnits>
<unit exponent="1" kind="dimensionless" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_C_mol_1">
<listOfUnits>
<unit exponent="1" kind="coulomb" multiplier="1" scale="0"/>
<unit exponent="-1" kind="mole" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_C_nmol_1">
<listOfUnits>
<unit exponent="1" kind="coulomb" multiplier="1" scale="0"/>
<unit exponent="-1" kind="mole" multiplier="1" scale="-9"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_molecules_pmol_1">
<listOfUnits>
<unit exponent="1" kind="item" multiplier="1" scale="0"/>
<unit exponent="-1" kind="mole" multiplier="1" scale="-12"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit__1000000000">
<listOfUnits>
<unit exponent="1" kind="dimensionless" multiplier="1000000000" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_mV_C_K_1_mol_1">
<listOfUnits>
<unit exponent="1" kind="volt" multiplier="1" scale="-3"/>
<unit exponent="1" kind="coulomb" multiplier="1" scale="0"/>
<unit exponent="-1" kind="kelvin" multiplier="1" scale="0"/>
<unit exponent="-1" kind="mole" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_mV_V_1">
<listOfUnits>
<unit exponent="1" kind="dimensionless" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_uM_um3_molecules_1">
<listOfUnits>
<unit exponent="1" kind="mole" multiplier="1" scale="-6"/>
<unit exponent="-1" kind="litre" multiplier="1" scale="0"/>
<unit exponent="3" kind="metre" multiplier="1" scale="-6"/>
<unit exponent="-1" kind="item" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="Unit_s_1">
<listOfUnits>
<unit exponent="-1" kind="second" multiplier="1" scale="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment constant="true" id="c0" name="c0" size="10" spatialDimensions="3" units="Unit_l">
<spatial:compartmentMapping xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:domainType="subdomain0" spatial:id="subdomain0c0" spatial:unitSize="1.0"/>
</compartment>
</listOfCompartments>
<listOfSpecies>
<species boundaryCondition="false" compartment="c0" constant="false" hasOnlySubstanceUnits="false" id="s0" name="s0" substanceUnits="Unit_umol"/>
<species boundaryCondition="false" compartment="c0" constant="false" hasOnlySubstanceUnits="false" id="s1" name="s1" substanceUnits="Unit_umol"/>
</listOfSpecies>
<listOfParameters>
<parameter constant="false" id="x" units="Unit_dm" value="0">
<spatial:spatialSymbolReference xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:spatialRef="x"/>
</parameter>
<parameter constant="true" id="s0_diff" units="Unit_dm2_s_1" value="1E-9">
<spatial:diffusionCoefficient xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:type="isotropic" spatial:variable="s0"/>
</parameter>
<parameter constant="true" id="s0_BC_Xm" units="Unit_umol_dm_l_1_s_1" value="0">
<spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmin" spatial:type="Neumann" spatial:variable="s0"/>
</parameter>
<parameter constant="true" id="s0_BC_Xp" units="Unit_umol_dm_l_1_s_1" value="0">
<spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmax" spatial:type="Neumann" spatial:variable="s0"/>
</parameter>
<parameter constant="true" id="s1_diff" units="Unit_dm2_s_1" value="1E-9">
<spatial:diffusionCoefficient xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:type="isotropic" spatial:variable="s1"/>
</parameter>
<parameter constant="true" id="s1_BC_Xm" units="Unit_umol_dm_l_1_s_1" value="0">
<spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmin" spatial:type="Neumann" spatial:variable="s1"/>
</parameter>
<parameter constant="true" id="s1_BC_Xp" units="Unit_umol_dm_l_1_s_1" value="0">
<spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmax" spatial:type="Neumann" spatial:variable="s1"/>
</parameter>
<parameter constant="true" id="_F_" units="Unit_C_mol_1" value="9.64853321E4"/>
<parameter constant="true" id="Kf_r0" units="Unit_s_1" value="1"/>
<parameter constant="true" id="Kr_r0" units="Unit_s_1" value="0.5"/>
</listOfParameters>
<listOfInitialAssignments>
<initialAssignment symbol="s0">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<cn> 100000 </cn>
<ci> x </ci>
</apply>
</math>
</initialAssignment>
<initialAssignment symbol="s1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<cn> 10 </cn>
<apply>
<minus/>
<apply>
<times/>
<cn> 1 </cn>
<cn> 100000 </cn>
<ci> x </ci>
</apply>
</apply>
</apply>
</math>
</initialAssignment>
</listOfInitialAssignments>
<listOfReactions>
<reaction compartment="c0" id="r0" name="r0" reversible="true" spatial:isLocal="true">
<listOfReactants>
<speciesReference constant="true" id="r0_s0r" species="s0" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference constant="true" id="r0_s1p" species="s1" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<apply>
<times/>
<ci> Kf_r0 </ci>
<ci> s0 </ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci> Kr_r0 </ci>
<ci> s1 </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml> |