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""" |
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VCell API |
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VCell API |
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The version of the OpenAPI document: 1.0.1 |
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Contact: vcell_support@uchc.com |
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Generated by OpenAPI Generator (https://openapi-generator.tech) |
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Do not edit the class manually. |
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""" |
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import io |
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import warnings |
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from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt |
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from typing import Dict, List, Optional, Tuple, Union, Any |
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try: |
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from typing import Annotated |
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except ImportError: |
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from typing_extensions import Annotated |
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from pydantic import StrictBytes, StrictFloat, StrictInt, StrictStr |
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from typing import Optional, Union |
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from vcell_client.api_client import ApiClient |
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from vcell_client.api_response import ApiResponse |
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from vcell_client.rest import RESTResponseType |
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class SolverResourceApi: |
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"""NOTE: This class is auto generated by OpenAPI Generator |
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Ref: https://openapi-generator.tech |
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Do not edit the class manually. |
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""" |
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def __init__(self, api_client=None) -> None: |
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if api_client is None: |
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api_client = ApiClient.get_default() |
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self.api_client = api_client |
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@validate_call |
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def get_fv_solver_input_from_sbml( |
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self, |
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sbml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
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duration: Optional[Union[StrictFloat, StrictInt]] = None, |
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output_time_step: Optional[Union[StrictFloat, StrictInt]] = None, |
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_request_timeout: Union[ |
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None, |
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|
Annotated[StrictFloat, Field(gt=0)], |
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Tuple[ |
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Annotated[StrictFloat, Field(gt=0)], |
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Annotated[StrictFloat, Field(gt=0)] |
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] |
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] = None, |
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_request_auth: Optional[Dict[StrictStr, Any]] = None, |
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_content_type: Optional[StrictStr] = None, |
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_headers: Optional[Dict[StrictStr, Any]] = None, |
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_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
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) -> bytearray: |
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"""Retrieve finite volume input from SBML spatial model. |
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:param sbml_file: |
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:type sbml_file: bytearray |
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:param duration: |
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:type duration: float |
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:param output_time_step: |
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:type output_time_step: float |
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:param _request_timeout: timeout setting for this request. If one |
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number provided, it will be total request |
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|
timeout. It can also be a pair (tuple) of |
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|
(connection, read) timeouts. |
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:type _request_timeout: int, tuple(int, int), optional |
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:param _request_auth: set to override the auth_settings for an a single |
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request; this effectively ignores the |
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authentication in the spec for a single request. |
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:type _request_auth: dict, optional |
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:param _content_type: force content-type for the request. |
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:type _content_type: str, Optional |
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:param _headers: set to override the headers for a single |
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|
request; this effectively ignores the headers |
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in the spec for a single request. |
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:type _headers: dict, optional |
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:param _host_index: set to override the host_index for a single |
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request; this effectively ignores the host_index |
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in the spec for a single request. |
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:type _host_index: int, optional |
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:return: Returns the result object. |
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""" |
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_param = self._get_fv_solver_input_from_sbml_serialize( |
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sbml_file=sbml_file, |
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duration=duration, |
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output_time_step=output_time_step, |
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_request_auth=_request_auth, |
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_content_type=_content_type, |
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_headers=_headers, |
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_host_index=_host_index |
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) |
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_response_types_map: Dict[str, Optional[str]] = { |
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'200': "bytearray", |
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'422': "VCellHTTPError" |
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} |
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response_data = self.api_client.call_api( |
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*_param, |
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_request_timeout=_request_timeout |
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) |
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response_data.read() |
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return self.api_client.response_deserialize( |
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response_data=response_data, |
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response_types_map=_response_types_map, |
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).data |
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@validate_call |
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def get_fv_solver_input_from_sbml_with_http_info( |
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self, |
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sbml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
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duration: Optional[Union[StrictFloat, StrictInt]] = None, |
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output_time_step: Optional[Union[StrictFloat, StrictInt]] = None, |
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|
_request_timeout: Union[ |
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None, |
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|
Annotated[StrictFloat, Field(gt=0)], |
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|
Tuple[ |
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Annotated[StrictFloat, Field(gt=0)], |
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|
Annotated[StrictFloat, Field(gt=0)] |
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] |
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] = None, |
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_request_auth: Optional[Dict[StrictStr, Any]] = None, |
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_content_type: Optional[StrictStr] = None, |
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_headers: Optional[Dict[StrictStr, Any]] = None, |
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_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
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) -> ApiResponse[bytearray]: |
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"""Retrieve finite volume input from SBML spatial model. |
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:param sbml_file: |
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:type sbml_file: bytearray |
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:param duration: |
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:type duration: float |
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:param output_time_step: |
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|
:type output_time_step: float |
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|
:param _request_timeout: timeout setting for this request. If one |
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|
number provided, it will be total request |
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|
timeout. It can also be a pair (tuple) of |
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|
(connection, read) timeouts. |
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|
:type _request_timeout: int, tuple(int, int), optional |
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|
:param _request_auth: set to override the auth_settings for an a single |
|
|
request; this effectively ignores the |
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|
authentication in the spec for a single request. |
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|
:type _request_auth: dict, optional |
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|
:param _content_type: force content-type for the request. |
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|
:type _content_type: str, Optional |
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|
:param _headers: set to override the headers for a single |
|
|
request; this effectively ignores the headers |
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|
in the spec for a single request. |
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|
:type _headers: dict, optional |
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|
:param _host_index: set to override the host_index for a single |
|
|
request; this effectively ignores the host_index |
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in the spec for a single request. |
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:type _host_index: int, optional |
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:return: Returns the result object. |
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""" |
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_param = self._get_fv_solver_input_from_sbml_serialize( |
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sbml_file=sbml_file, |
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duration=duration, |
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output_time_step=output_time_step, |
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_request_auth=_request_auth, |
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_content_type=_content_type, |
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_headers=_headers, |
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_host_index=_host_index |
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) |
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_response_types_map: Dict[str, Optional[str]] = { |
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'200': "bytearray", |
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'422': "VCellHTTPError" |
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} |
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response_data = self.api_client.call_api( |
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*_param, |
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_request_timeout=_request_timeout |
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) |
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response_data.read() |
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return self.api_client.response_deserialize( |
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response_data=response_data, |
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response_types_map=_response_types_map, |
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) |
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@validate_call |
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def get_fv_solver_input_from_sbml_without_preload_content( |
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|
self, |
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sbml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
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duration: Optional[Union[StrictFloat, StrictInt]] = None, |
|
|
output_time_step: Optional[Union[StrictFloat, StrictInt]] = None, |
|
|
_request_timeout: Union[ |
|
|
None, |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Tuple[ |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Annotated[StrictFloat, Field(gt=0)] |
|
|
] |
|
|
] = None, |
|
|
_request_auth: Optional[Dict[StrictStr, Any]] = None, |
|
|
_content_type: Optional[StrictStr] = None, |
|
|
_headers: Optional[Dict[StrictStr, Any]] = None, |
|
|
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
|
|
) -> RESTResponseType: |
|
|
"""Retrieve finite volume input from SBML spatial model. |
|
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|
|
|
|
|
|
:param sbml_file: |
|
|
:type sbml_file: bytearray |
|
|
:param duration: |
|
|
:type duration: float |
|
|
:param output_time_step: |
|
|
:type output_time_step: float |
|
|
:param _request_timeout: timeout setting for this request. If one |
|
|
number provided, it will be total request |
|
|
timeout. It can also be a pair (tuple) of |
|
|
(connection, read) timeouts. |
|
|
:type _request_timeout: int, tuple(int, int), optional |
|
|
:param _request_auth: set to override the auth_settings for an a single |
|
|
request; this effectively ignores the |
|
|
authentication in the spec for a single request. |
|
|
:type _request_auth: dict, optional |
|
|
:param _content_type: force content-type for the request. |
|
|
:type _content_type: str, Optional |
|
|
:param _headers: set to override the headers for a single |
|
|
request; this effectively ignores the headers |
|
|
in the spec for a single request. |
|
|
:type _headers: dict, optional |
|
|
:param _host_index: set to override the host_index for a single |
|
|
request; this effectively ignores the host_index |
|
|
in the spec for a single request. |
|
|
:type _host_index: int, optional |
|
|
:return: Returns the result object. |
|
|
""" |
|
|
|
|
|
_param = self._get_fv_solver_input_from_sbml_serialize( |
|
|
sbml_file=sbml_file, |
|
|
duration=duration, |
|
|
output_time_step=output_time_step, |
|
|
_request_auth=_request_auth, |
|
|
_content_type=_content_type, |
|
|
_headers=_headers, |
|
|
_host_index=_host_index |
|
|
) |
|
|
|
|
|
_response_types_map: Dict[str, Optional[str]] = { |
|
|
'200': "bytearray", |
|
|
'422': "VCellHTTPError" |
|
|
|
|
|
} |
|
|
response_data = self.api_client.call_api( |
|
|
*_param, |
|
|
_request_timeout=_request_timeout |
|
|
) |
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|
return response_data.response |
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|
|
|
|
|
|
def _get_fv_solver_input_from_sbml_serialize( |
|
|
self, |
|
|
sbml_file, |
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|
duration, |
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|
output_time_step, |
|
|
_request_auth, |
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|
_content_type, |
|
|
_headers, |
|
|
_host_index, |
|
|
) -> Tuple: |
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|
|
|
_host = None |
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|
|
_collection_formats: Dict[str, str] = { |
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|
|
|
} |
|
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|
_path_params: Dict[str, str] = {} |
|
|
_query_params: List[Tuple[str, str]] = [] |
|
|
_header_params: Dict[str, Optional[str]] = _headers or {} |
|
|
_form_params: List[Tuple[str, str]] = [] |
|
|
_files: Dict[str, str] = {} |
|
|
_body_params: Optional[bytes] = None |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
if sbml_file is not None: |
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|
_files['sbmlFile'] = sbml_file |
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|
if duration is not None: |
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|
_form_params.append(('duration', duration)) |
|
|
if output_time_step is not None: |
|
|
_form_params.append(('output_time_step', output_time_step)) |
|
|
|
|
|
|
|
|
|
|
|
|
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|
_header_params['Accept'] = self.api_client.select_header_accept( |
|
|
[ |
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|
'application/octet-stream', |
|
|
'application/json' |
|
|
] |
|
|
) |
|
|
|
|
|
|
|
|
if _content_type: |
|
|
_header_params['Content-Type'] = _content_type |
|
|
else: |
|
|
_default_content_type = ( |
|
|
self.api_client.select_header_content_type( |
|
|
[ |
|
|
'multipart/form-data' |
|
|
] |
|
|
) |
|
|
) |
|
|
if _default_content_type is not None: |
|
|
_header_params['Content-Type'] = _default_content_type |
|
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|
|
|
|
|
|
_auth_settings: List[str] = [ |
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|
] |
|
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|
|
|
return self.api_client.param_serialize( |
|
|
method='POST', |
|
|
resource_path='/api/v1/solver/getFVSolverInput', |
|
|
path_params=_path_params, |
|
|
query_params=_query_params, |
|
|
header_params=_header_params, |
|
|
body=_body_params, |
|
|
post_params=_form_params, |
|
|
files=_files, |
|
|
auth_settings=_auth_settings, |
|
|
collection_formats=_collection_formats, |
|
|
_host=_host, |
|
|
_request_auth=_request_auth |
|
|
) |
|
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|
|
|
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|
|
@validate_call |
|
|
def get_fv_solver_input_from_vcml( |
|
|
self, |
|
|
vcml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
|
|
simulation_name: Optional[StrictStr] = None, |
|
|
_request_timeout: Union[ |
|
|
None, |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Tuple[ |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Annotated[StrictFloat, Field(gt=0)] |
|
|
] |
|
|
] = None, |
|
|
_request_auth: Optional[Dict[StrictStr, Any]] = None, |
|
|
_content_type: Optional[StrictStr] = None, |
|
|
_headers: Optional[Dict[StrictStr, Any]] = None, |
|
|
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
|
|
) -> bytearray: |
|
|
"""Retrieve finite volume input from SBML spatial model. |
|
|
|
|
|
|
|
|
:param vcml_file: |
|
|
:type vcml_file: bytearray |
|
|
:param simulation_name: |
|
|
:type simulation_name: str |
|
|
:param _request_timeout: timeout setting for this request. If one |
|
|
number provided, it will be total request |
|
|
timeout. It can also be a pair (tuple) of |
|
|
(connection, read) timeouts. |
|
|
:type _request_timeout: int, tuple(int, int), optional |
|
|
:param _request_auth: set to override the auth_settings for an a single |
|
|
request; this effectively ignores the |
|
|
authentication in the spec for a single request. |
|
|
:type _request_auth: dict, optional |
|
|
:param _content_type: force content-type for the request. |
|
|
:type _content_type: str, Optional |
|
|
:param _headers: set to override the headers for a single |
|
|
request; this effectively ignores the headers |
|
|
in the spec for a single request. |
|
|
:type _headers: dict, optional |
|
|
:param _host_index: set to override the host_index for a single |
|
|
request; this effectively ignores the host_index |
|
|
in the spec for a single request. |
|
|
:type _host_index: int, optional |
|
|
:return: Returns the result object. |
|
|
""" |
|
|
|
|
|
_param = self._get_fv_solver_input_from_vcml_serialize( |
|
|
vcml_file=vcml_file, |
|
|
simulation_name=simulation_name, |
|
|
_request_auth=_request_auth, |
|
|
_content_type=_content_type, |
|
|
_headers=_headers, |
|
|
_host_index=_host_index |
|
|
) |
|
|
|
|
|
_response_types_map: Dict[str, Optional[str]] = { |
|
|
'200': "bytearray", |
|
|
'422': "VCellHTTPError" |
|
|
|
|
|
} |
|
|
response_data = self.api_client.call_api( |
|
|
*_param, |
|
|
_request_timeout=_request_timeout |
|
|
) |
|
|
response_data.read() |
|
|
return self.api_client.response_deserialize( |
|
|
response_data=response_data, |
|
|
response_types_map=_response_types_map, |
|
|
).data |
|
|
|
|
|
|
|
|
@validate_call |
|
|
def get_fv_solver_input_from_vcml_with_http_info( |
|
|
self, |
|
|
vcml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
|
|
simulation_name: Optional[StrictStr] = None, |
|
|
_request_timeout: Union[ |
|
|
None, |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Tuple[ |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Annotated[StrictFloat, Field(gt=0)] |
|
|
] |
|
|
] = None, |
|
|
_request_auth: Optional[Dict[StrictStr, Any]] = None, |
|
|
_content_type: Optional[StrictStr] = None, |
|
|
_headers: Optional[Dict[StrictStr, Any]] = None, |
|
|
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
|
|
) -> ApiResponse[bytearray]: |
|
|
"""Retrieve finite volume input from SBML spatial model. |
|
|
|
|
|
|
|
|
:param vcml_file: |
|
|
:type vcml_file: bytearray |
|
|
:param simulation_name: |
|
|
:type simulation_name: str |
|
|
:param _request_timeout: timeout setting for this request. If one |
|
|
number provided, it will be total request |
|
|
timeout. It can also be a pair (tuple) of |
|
|
(connection, read) timeouts. |
|
|
:type _request_timeout: int, tuple(int, int), optional |
|
|
:param _request_auth: set to override the auth_settings for an a single |
|
|
request; this effectively ignores the |
|
|
authentication in the spec for a single request. |
|
|
:type _request_auth: dict, optional |
|
|
:param _content_type: force content-type for the request. |
|
|
:type _content_type: str, Optional |
|
|
:param _headers: set to override the headers for a single |
|
|
request; this effectively ignores the headers |
|
|
in the spec for a single request. |
|
|
:type _headers: dict, optional |
|
|
:param _host_index: set to override the host_index for a single |
|
|
request; this effectively ignores the host_index |
|
|
in the spec for a single request. |
|
|
:type _host_index: int, optional |
|
|
:return: Returns the result object. |
|
|
""" |
|
|
|
|
|
_param = self._get_fv_solver_input_from_vcml_serialize( |
|
|
vcml_file=vcml_file, |
|
|
simulation_name=simulation_name, |
|
|
_request_auth=_request_auth, |
|
|
_content_type=_content_type, |
|
|
_headers=_headers, |
|
|
_host_index=_host_index |
|
|
) |
|
|
|
|
|
_response_types_map: Dict[str, Optional[str]] = { |
|
|
'200': "bytearray", |
|
|
'422': "VCellHTTPError" |
|
|
|
|
|
} |
|
|
response_data = self.api_client.call_api( |
|
|
*_param, |
|
|
_request_timeout=_request_timeout |
|
|
) |
|
|
response_data.read() |
|
|
return self.api_client.response_deserialize( |
|
|
response_data=response_data, |
|
|
response_types_map=_response_types_map, |
|
|
) |
|
|
|
|
|
|
|
|
@validate_call |
|
|
def get_fv_solver_input_from_vcml_without_preload_content( |
|
|
self, |
|
|
vcml_file: Optional[Union[StrictBytes, StrictStr]] = None, |
|
|
simulation_name: Optional[StrictStr] = None, |
|
|
_request_timeout: Union[ |
|
|
None, |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Tuple[ |
|
|
Annotated[StrictFloat, Field(gt=0)], |
|
|
Annotated[StrictFloat, Field(gt=0)] |
|
|
] |
|
|
] = None, |
|
|
_request_auth: Optional[Dict[StrictStr, Any]] = None, |
|
|
_content_type: Optional[StrictStr] = None, |
|
|
_headers: Optional[Dict[StrictStr, Any]] = None, |
|
|
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, |
|
|
) -> RESTResponseType: |
|
|
"""Retrieve finite volume input from SBML spatial model. |
|
|
|
|
|
|
|
|
:param vcml_file: |
|
|
:type vcml_file: bytearray |
|
|
:param simulation_name: |
|
|
:type simulation_name: str |
|
|
:param _request_timeout: timeout setting for this request. If one |
|
|
number provided, it will be total request |
|
|
timeout. It can also be a pair (tuple) of |
|
|
(connection, read) timeouts. |
|
|
:type _request_timeout: int, tuple(int, int), optional |
|
|
:param _request_auth: set to override the auth_settings for an a single |
|
|
request; this effectively ignores the |
|
|
authentication in the spec for a single request. |
|
|
:type _request_auth: dict, optional |
|
|
:param _content_type: force content-type for the request. |
|
|
:type _content_type: str, Optional |
|
|
:param _headers: set to override the headers for a single |
|
|
request; this effectively ignores the headers |
|
|
in the spec for a single request. |
|
|
:type _headers: dict, optional |
|
|
:param _host_index: set to override the host_index for a single |
|
|
request; this effectively ignores the host_index |
|
|
in the spec for a single request. |
|
|
:type _host_index: int, optional |
|
|
:return: Returns the result object. |
|
|
""" |
|
|
|
|
|
_param = self._get_fv_solver_input_from_vcml_serialize( |
|
|
vcml_file=vcml_file, |
|
|
simulation_name=simulation_name, |
|
|
_request_auth=_request_auth, |
|
|
_content_type=_content_type, |
|
|
_headers=_headers, |
|
|
_host_index=_host_index |
|
|
) |
|
|
|
|
|
_response_types_map: Dict[str, Optional[str]] = { |
|
|
'200': "bytearray", |
|
|
'422': "VCellHTTPError" |
|
|
|
|
|
} |
|
|
response_data = self.api_client.call_api( |
|
|
*_param, |
|
|
_request_timeout=_request_timeout |
|
|
) |
|
|
return response_data.response |
|
|
|
|
|
|
|
|
def _get_fv_solver_input_from_vcml_serialize( |
|
|
self, |
|
|
vcml_file, |
|
|
simulation_name, |
|
|
_request_auth, |
|
|
_content_type, |
|
|
_headers, |
|
|
_host_index, |
|
|
) -> Tuple: |
|
|
|
|
|
_host = None |
|
|
|
|
|
_collection_formats: Dict[str, str] = { |
|
|
|
|
|
} |
|
|
|
|
|
_path_params: Dict[str, str] = {} |
|
|
_query_params: List[Tuple[str, str]] = [] |
|
|
_header_params: Dict[str, Optional[str]] = _headers or {} |
|
|
_form_params: List[Tuple[str, str]] = [] |
|
|
_files: Dict[str, str] = {} |
|
|
_body_params: Optional[bytes] = None |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
if vcml_file is not None: |
|
|
_files['vcmlFile'] = vcml_file |
|
|
if simulation_name is not None: |
|
|
_form_params.append(('simulation_name', simulation_name)) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
_header_params['Accept'] = self.api_client.select_header_accept( |
|
|
[ |
|
|
'application/octet-stream', |
|
|
'application/json' |
|
|
] |
|
|
) |
|
|
|
|
|
|
|
|
if _content_type: |
|
|
_header_params['Content-Type'] = _content_type |
|
|
else: |
|
|
_default_content_type = ( |
|
|
self.api_client.select_header_content_type( |
|
|
[ |
|
|
'multipart/form-data' |
|
|
] |
|
|
) |
|
|
) |
|
|
if _default_content_type is not None: |
|
|
_header_params['Content-Type'] = _default_content_type |
|
|
|
|
|
|
|
|
_auth_settings: List[str] = [ |
|
|
] |
|
|
|
|
|
return self.api_client.param_serialize( |
|
|
method='POST', |
|
|
resource_path='/api/v1/solver/getFVSolverInputFromVCML', |
|
|
path_params=_path_params, |
|
|
query_params=_query_params, |
|
|
header_params=_header_params, |
|
|
body=_body_params, |
|
|
post_params=_form_params, |
|
|
files=_files, |
|
|
auth_settings=_auth_settings, |
|
|
collection_formats=_collection_formats, |
|
|
_host=_host, |
|
|
_request_auth=_request_auth |
|
|
) |
|
|
|
|
|
|
|
|
|
