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""" |
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VCell API |
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VCell API |
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The version of the OpenAPI document: 1.0.1 |
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Contact: vcell_support@uchc.com |
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Generated by OpenAPI Generator (https://openapi-generator.tech) |
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Do not edit the class manually. |
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""" |
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import copy |
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import logging |
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import sys |
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import urllib3 |
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import http.client as httplib |
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JSON_SCHEMA_VALIDATION_KEYWORDS = { |
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'multipleOf', 'maximum', 'exclusiveMaximum', |
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'minimum', 'exclusiveMinimum', 'maxLength', |
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'minLength', 'pattern', 'maxItems', 'minItems' |
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} |
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class Configuration: |
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"""This class contains various settings of the API client. |
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:param host: Base url. |
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:param api_key: Dict to store API key(s). |
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Each entry in the dict specifies an API key. |
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The dict key is the name of the security scheme in the OAS specification. |
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The dict value is the API key secret. |
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:param api_key_prefix: Dict to store API prefix (e.g. Bearer). |
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The dict key is the name of the security scheme in the OAS specification. |
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The dict value is an API key prefix when generating the auth data. |
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:param username: Username for HTTP basic authentication. |
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:param password: Password for HTTP basic authentication. |
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:param access_token: Access token. |
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:param server_index: Index to servers configuration. |
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:param server_variables: Mapping with string values to replace variables in |
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templated server configuration. The validation of enums is performed for |
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variables with defined enum values before. |
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:param server_operation_index: Mapping from operation ID to an index to server |
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configuration. |
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:param server_operation_variables: Mapping from operation ID to a mapping with |
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string values to replace variables in templated server configuration. |
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The validation of enums is performed for variables with defined enum |
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values before. |
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:param ssl_ca_cert: str - the path to a file of concatenated CA certificates |
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in PEM format. |
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:Example: |
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""" |
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_default = None |
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def __init__(self, host=None, |
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api_key=None, api_key_prefix=None, |
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username=None, password=None, |
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access_token=None, |
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server_index=None, server_variables=None, |
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server_operation_index=None, server_operation_variables=None, |
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ssl_ca_cert=None, |
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) -> None: |
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"""Constructor |
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""" |
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self._base_path = "https://vcell.cam.uchc.edu" if host is None else host |
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"""Default Base url |
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""" |
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self.server_index = 0 if server_index is None and host is None else server_index |
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self.server_operation_index = server_operation_index or {} |
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"""Default server index |
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""" |
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self.server_variables = server_variables or {} |
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self.server_operation_variables = server_operation_variables or {} |
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"""Default server variables |
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""" |
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self.temp_folder_path = None |
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"""Temp file folder for downloading files |
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""" |
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self.api_key = {} |
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if api_key: |
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self.api_key = api_key |
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"""dict to store API key(s) |
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""" |
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self.api_key_prefix = {} |
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if api_key_prefix: |
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self.api_key_prefix = api_key_prefix |
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"""dict to store API prefix (e.g. Bearer) |
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""" |
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self.refresh_api_key_hook = None |
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"""function hook to refresh API key if expired |
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""" |
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self.username = username |
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"""Username for HTTP basic authentication |
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""" |
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self.password = password |
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"""Password for HTTP basic authentication |
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""" |
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self.access_token = access_token |
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"""Access token |
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""" |
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self.logger = {} |
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"""Logging Settings |
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""" |
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self.logger["package_logger"] = logging.getLogger("vcell_client") |
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self.logger["urllib3_logger"] = logging.getLogger("urllib3") |
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self.logger_format = '%(asctime)s %(levelname)s %(message)s' |
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"""Log format |
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""" |
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self.logger_stream_handler = None |
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"""Log stream handler |
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""" |
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self.logger_file_handler = None |
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"""Log file handler |
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""" |
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self.logger_file = None |
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"""Debug file location |
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""" |
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self.debug = False |
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"""Debug switch |
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""" |
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self.verify_ssl = True |
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"""SSL/TLS verification |
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Set this to false to skip verifying SSL certificate when calling API |
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from https server. |
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""" |
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self.ssl_ca_cert = ssl_ca_cert |
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"""Set this to customize the certificate file to verify the peer. |
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""" |
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self.cert_file = None |
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"""client certificate file |
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""" |
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self.key_file = None |
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"""client key file |
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""" |
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self.assert_hostname = None |
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"""Set this to True/False to enable/disable SSL hostname verification. |
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""" |
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self.tls_server_name = None |
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"""SSL/TLS Server Name Indication (SNI) |
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Set this to the SNI value expected by the server. |
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""" |
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self.proxy = None |
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"""Proxy URL |
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""" |
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self.proxy_headers = None |
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"""Proxy headers |
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""" |
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self.safe_chars_for_path_param = '' |
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"""Safe chars for path_param |
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""" |
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self.retries = None |
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"""Adding retries to override urllib3 default value 3 |
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""" |
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self.client_side_validation = True |
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self.socket_options = None |
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"""Options to pass down to the underlying urllib3 socket |
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""" |
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self.datetime_format = "%Y-%m-%dT%H:%M:%S.%f%z" |
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"""datetime format |
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""" |
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self.date_format = "%Y-%m-%d" |
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"""date format |
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""" |
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def __deepcopy__(self, memo): |
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cls = self.__class__ |
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result = cls.__new__(cls) |
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memo[id(self)] = result |
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for k, v in self.__dict__.items(): |
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if k not in ('logger', 'logger_file_handler'): |
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setattr(result, k, copy.deepcopy(v, memo)) |
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result.logger = copy.copy(self.logger) |
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result.logger_file = self.logger_file |
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result.debug = self.debug |
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return result |
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def __setattr__(self, name, value): |
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object.__setattr__(self, name, value) |
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@classmethod |
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def set_default(cls, default): |
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"""Set default instance of configuration. |
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It stores default configuration, which can be |
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returned by get_default_copy method. |
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:param default: object of Configuration |
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""" |
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cls._default = default |
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@classmethod |
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def get_default_copy(cls): |
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"""Deprecated. Please use `get_default` instead. |
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Deprecated. Please use `get_default` instead. |
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:return: The configuration object. |
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""" |
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return cls.get_default() |
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@classmethod |
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def get_default(cls): |
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"""Return the default configuration. |
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This method returns newly created, based on default constructor, |
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object of Configuration class or returns a copy of default |
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configuration. |
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:return: The configuration object. |
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""" |
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if cls._default is None: |
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cls._default = Configuration() |
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return cls._default |
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@property |
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def logger_file(self): |
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"""The logger file. |
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If the logger_file is None, then add stream handler and remove file |
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handler. Otherwise, add file handler and remove stream handler. |
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:param value: The logger_file path. |
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:type: str |
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""" |
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return self.__logger_file |
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@logger_file.setter |
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def logger_file(self, value): |
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"""The logger file. |
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If the logger_file is None, then add stream handler and remove file |
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handler. Otherwise, add file handler and remove stream handler. |
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:param value: The logger_file path. |
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:type: str |
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""" |
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self.__logger_file = value |
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if self.__logger_file: |
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self.logger_file_handler = logging.FileHandler(self.__logger_file) |
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self.logger_file_handler.setFormatter(self.logger_formatter) |
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for _, logger in self.logger.items(): |
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logger.addHandler(self.logger_file_handler) |
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@property |
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def debug(self): |
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"""Debug status |
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:param value: The debug status, True or False. |
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:type: bool |
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""" |
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return self.__debug |
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@debug.setter |
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def debug(self, value): |
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"""Debug status |
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:param value: The debug status, True or False. |
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:type: bool |
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""" |
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self.__debug = value |
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if self.__debug: |
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for _, logger in self.logger.items(): |
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logger.setLevel(logging.DEBUG) |
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httplib.HTTPConnection.debuglevel = 1 |
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else: |
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for _, logger in self.logger.items(): |
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logger.setLevel(logging.WARNING) |
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httplib.HTTPConnection.debuglevel = 0 |
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@property |
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def logger_format(self): |
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"""The logger format. |
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The logger_formatter will be updated when sets logger_format. |
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:param value: The format string. |
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:type: str |
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""" |
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return self.__logger_format |
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@logger_format.setter |
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def logger_format(self, value): |
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"""The logger format. |
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The logger_formatter will be updated when sets logger_format. |
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:param value: The format string. |
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:type: str |
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""" |
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self.__logger_format = value |
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self.logger_formatter = logging.Formatter(self.__logger_format) |
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def get_api_key_with_prefix(self, identifier, alias=None): |
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"""Gets API key (with prefix if set). |
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:param identifier: The identifier of apiKey. |
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:param alias: The alternative identifier of apiKey. |
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:return: The token for api key authentication. |
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""" |
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if self.refresh_api_key_hook is not None: |
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self.refresh_api_key_hook(self) |
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key = self.api_key.get(identifier, self.api_key.get(alias) if alias is not None else None) |
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if key: |
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prefix = self.api_key_prefix.get(identifier) |
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if prefix: |
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return "%s %s" % (prefix, key) |
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else: |
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return key |
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def get_basic_auth_token(self): |
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"""Gets HTTP basic authentication header (string). |
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:return: The token for basic HTTP authentication. |
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""" |
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username = "" |
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if self.username is not None: |
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username = self.username |
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password = "" |
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if self.password is not None: |
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password = self.password |
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return urllib3.util.make_headers( |
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basic_auth=username + ':' + password |
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).get('authorization') |
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def auth_settings(self): |
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"""Gets Auth Settings dict for api client. |
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:return: The Auth Settings information dict. |
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""" |
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auth = {} |
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return auth |
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def to_debug_report(self): |
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"""Gets the essential information for debugging. |
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:return: The report for debugging. |
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""" |
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return "Python SDK Debug Report:\n"\ |
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"OS: {env}\n"\ |
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"Python Version: {pyversion}\n"\ |
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"Version of the API: 1.0.1\n"\ |
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"SDK Package Version: 1.0.0".\ |
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format(env=sys.platform, pyversion=sys.version) |
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def get_host_settings(self): |
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"""Gets an array of host settings |
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:return: An array of host settings |
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""" |
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return [ |
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{ |
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'url': "https://vcell.cam.uchc.edu", |
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'description': "No description provided", |
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} |
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] |
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def get_host_from_settings(self, index, variables=None, servers=None): |
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"""Gets host URL based on the index and variables |
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:param index: array index of the host settings |
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:param variables: hash of variable and the corresponding value |
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:param servers: an array of host settings or None |
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:return: URL based on host settings |
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""" |
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if index is None: |
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return self._base_path |
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variables = {} if variables is None else variables |
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servers = self.get_host_settings() if servers is None else servers |
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try: |
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server = servers[index] |
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except IndexError: |
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raise ValueError( |
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"Invalid index {0} when selecting the host settings. " |
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"Must be less than {1}".format(index, len(servers))) |
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url = server['url'] |
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for variable_name, variable in server.get('variables', {}).items(): |
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used_value = variables.get( |
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variable_name, variable['default_value']) |
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if 'enum_values' in variable \ |
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and used_value not in variable['enum_values']: |
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raise ValueError( |
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"The variable `{0}` in the host URL has invalid value " |
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"{1}. Must be {2}.".format( |
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variable_name, variables[variable_name], |
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variable['enum_values'])) |
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url = url.replace("{" + variable_name + "}", used_value) |
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return url |
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@property |
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def host(self): |
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"""Return generated host.""" |
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return self.get_host_from_settings(self.server_index, variables=self.server_variables) |
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@host.setter |
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def host(self, value): |
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"""Fix base path.""" |
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self._base_path = value |
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self.server_index = None |
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|