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import copy
from functools import partial
from pathlib import Path
from zipfile import ZipFile
import h5py
import numpy as np
def _get_ds_dictionaries(ds_dict: dict[str, np.ndarray], _name, node):
# From https://stackoverflow.com/questions/70055365/hdf5-file-to-dictionary
fullname = node.name
if isinstance(node, h5py.Dataset):
# node is a dataset
# print(f"Dataset: {fullname}; adding to dictionary")
ds_dict[fullname] = np.array(node)
# print('ds_dict size', len(ds_dict))
# else:
# node is a group
# print(f'Group: {fullname}; skipping')
def get_results(results_zip_file: Path) -> dict[str, dict[str, np.ndarray]]:
results: dict[str, dict[str, np.ndarray]] = {}
with ZipFile(results_zip_file, "r") as the_zip:
for name in the_zip.namelist():
if "reports.h5" in name:
with h5py.File(the_zip.open(name)) as h5:
ds_dict: dict[str, np.ndarray] = {}
ds_visitor = partial(_get_ds_dictionaries, ds_dict)
h5.visititems(ds_visitor)
results[name] = copy.deepcopy(ds_dict)
return results
def compare_arrays(arr1: np.ndarray, arr2: np.ndarray) -> bool:
if type(arr1[0]) == np.float64:
max1 = max(arr1)
max2 = max(arr2)
atol = max(1e-3, max1*1e-5, max2*1e-5)
return np.allclose(arr1, arr2, rtol=1e-4, atol=atol)
for n in range(len(arr1)):
if not compare_arrays(arr1[n], arr2[n]):
return False
return True
def compare_datasets(results1: dict[str, dict[str, np.ndarray]], results2: dict[str, dict[str, np.ndarray]]) -> bool:
for h5_file_path in results1:
if h5_file_path not in results2:
return False
for dataset_name in results1[h5_file_path]:
if dataset_name not in results2[h5_file_path]:
return False
arr1 = results1[h5_file_path][dataset_name]
arr2 = results2[h5_file_path][dataset_name]
if arr1.shape != arr2.shape:
return False
if not compare_arrays(arr1, arr2):
return False
return True