COPASI / data /LinuxTGZ /self-extractor.sh
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#!/usr/bin/env bash
# Copyright (C) 2021 - 2022 by Pedro Mendes, Rector and Visitors of the
# University of Virginia, University of Heidelberg, and University
# of Connecticut School of Medicine.
# All rights reserved.
# The values below are updated by the build process
VERSION=%VERSION%
PACKAGE_NAME=%PACKAGE_NAME%
echo ""
echo "COPASI ${VERSION} Self Extracting Installer"
echo ""
show_help() {
echo "Install COPASI ${VERSION}"
echo " Usage: $(basename $0) [-t tmp_dir] [-i install_dir] [-d desktop_dir]"
echo "Only extract COPASI ${VERSION} to destination (default: $(pwd))"
echo " Usage: $(basename $0) -e [destination]"
}
prompt_for_dir() {
RESULT="$(echo $3 | sed -e 's?^~?'"${HOME}"'?')"
while :
do
if [ _"${RESULT}" != _ ]; then
[ -d "${RESULT}" ] || mkdir -p "${RESULT}"
[ -d "${RESULT}" ] && [ -w "${RESULT}" ] && break
fi
read -e -i "$1" -p "$2 " RESULT
RESULT="$(echo ${RESULT} | sed -e 's?^~?'"${HOME}"'?')"
done
echo "$2 \"${RESULT}\""
}
EXTRACT_DIR=
TMP_DIR=
DESKTOP_DIR=
INSTALL_DIR=
shopt -s globstar
OPTIND=1
while getopts "het:d:i:" opt; do
case "$opt" in
h)
show_help
exit 0
;;
e)
shift
EXTRACT_DIR="${@:-$(pwd)}"
;;
t)
TMP_DIR="$OPTARG"
;;
d)
DESKTOP_DIR="$OPTARG"
;;
i)
INSTALL_DIR="$OPTARG"
;;
esac
done
shift $((OPTIND-1))
# Find where the archive starts
ARCHIVE=$(awk '/^__ARCHIVE_BELOW__/ {print NR + 1; exit 0; }' "$0")
# We have an extract directory and will only extract to it
if [ _"${EXTRACT_DIR}" != _ ]; then
prompt_for_dir "${EXTRACT_DIR}" "Extract directory:" "${EXTRACT_DIR}"
EXTRACT_DIR="$(readlink -f ${RESULT})"
echo tail -n+$ARCHIVE "$0" '| 'tar -xzv -C "${EXTRACT_DIR}"
tail -n+$ARCHIVE "$0" | tar -xzv -C "${EXTRACT_DIR}"
exit 0
fi
prompt_for_dir "${TMP-${TEMP-/tmp}}" "Temp directory:" "${TMP_DIR}"
TMP_DIR="$(readlink -f ${RESULT})"
EXTRACT_DIR=$(mktemp -d "${TMP_DIR}"/copasi.XXXXXX)
echo tail -n+$ARCHIVE "$0" '| 'tar -xzv -C "${EXTRACT_DIR}"
tail -n+$ARCHIVE "$0" | tar -xzv -C "${EXTRACT_DIR}"
prompt_for_dir "/opt/COPASI/${VERSION}" "Installation directory:" "${INSTALL_DIR}"
INSTALL_DIR="$(readlink -f ${RESULT})"
echo cp -r "${EXTRACT_DIR}"/${PACKAGE_NAME}/'*' "${INSTALL_DIR}"
cp -r "${EXTRACT_DIR}"/${PACKAGE_NAME}/* "${INSTALL_DIR}"
if [ -w "/usr/share/applications" ]; then
DEFAULT_DESKTOP_DIR="/usr/share/applications"
else
DEFAULT_DESKTOP_DIR="~/.local/share/applications"
fi
prompt_for_dir "${DEFAULT_DESKTOP_DIR}" "Desktop file location:" "${DESKTOP_DIR}"
DESKTOP_DIR="$(readlink -f ${RESULT})"
NAME=COPASI
DESKTOP_NAME=COPASI
if [ -e "${DESKTOP_DIR}"/COPASI.desktop ]; then
echo COPASI desktop file exist!
echo You may overwrite it or create a version specific file.
while :
do
read -e -i "n" -p 'Create version specific desktop file [y|n]: ' RESULT
[ _${RESULT} = _n ] && break
[ _${RESULT} = _y ] && break
done
if [ _${RESULT} = _y ]; then
NAME="COPASI ${VERSION}"
DESKTOP_NAME="COPASI-${VERSION}"
fi
fi
echo "[Desktop Entry]
Encoding=UTF-8
Version=1.0
Exec=${INSTALL_DIR}/bin/CopasiUI %u
Icon=${INSTALL_DIR}/share/copasi/icons/Copasi48-Alpha.xpm
MimeType=x-scheme-handler/copasi;application/x-copasi
Name=${NAME}
GenericName=Biochemical simulation
NoDisplay=false
Type=Application
Categories=Science;Utility" '> '"${DESKTOP_DIR}/${DESKTOP_NAME}".desktop
echo "[Desktop Entry]
Encoding=UTF-8
Version=1.0
Exec=${INSTALL_DIR}/bin/CopasiUI %u
Icon=${INSTALL_DIR}/share/copasi/icons/Copasi48-Alpha.xpm
MimeType=x-scheme-handler/copasi;application/x-copasi
Name=${NAME}
GenericName=Biochemical simulation
NoDisplay=false
Type=Application
Categories=Science;Utility" > "${DESKTOP_DIR}/${DESKTOP_NAME}".desktop
if command -v xdg-settings &> /dev/null ; then
xdg-settings set default-url-scheme-handler copasi "${DESKTOP_NAME}".desktop
fi
if command -v update-desktop-database &> /dev/null ; then
update-desktop-database /usr/share/applications ~/.local/share/applications/
fi
if command -v xdg-mime &> /dev/null ; then
xdg-mime install ${INSTALL_DIR}/share/copasi/COPASI-mime.xml
fi
rm -rf "${EXTRACT_DIR}"
exit 0
__ARCHIVE_BELOW__