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| #include "catch.hpp" |
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| extern std::string getTestFile(const std::string& fileName); |
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| #include <copasi/CopasiTypes.h> |
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| bool verify_cn(const CDataModel* dm, const std::string& cn) |
| { |
| auto* ref = dm->getObject({cn }); |
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| if (ref == NULL) |
| return false; |
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| auto resolved = ref->getStringCN(); |
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| if (resolved.find("not found") != std::string::npos) |
| return false; |
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| return true; |
| } |
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| TEST_CASE("1: loading example files, and resolve CNs", "[copasi]") |
| { |
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| auto* dm = CRootContainer::addDatamodel(); |
| REQUIRE(dm != nullptr); |
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| SECTION("brusselator example") |
| { |
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| REQUIRE(dm->loadModel(getTestFile("test-data/brusselator.cps"), NULL) == true); |
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| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Reference=InitialVolume")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Reference=Rate")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Reference=Volume")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=InitialParticleNumber")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=ParticleNumber")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=ParticleNumberRate")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=Rate")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=Concentration")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Vector=Compartments[compartment],Vector=Metabolites[A],Reference=InitialConcentration")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Array=Stoichiometry(ann)[0][0]")); |
| REQUIRE(verify_cn(dm, "CN=Root,Model=The Brusselator,Array=Stoichiometry(ann)[X][(R1)]")); |
| REQUIRE(verify_cn(dm, "CN=Root,Vector=TaskList[Sensitivities],Problem=Sensitivities,Array=Sensitivities array[0][0]")); |
| REQUIRE(verify_cn(dm, "CN=Root,Vector=TaskList[Sensitivities],Problem=Sensitivities,Array=Sensitivities array[\\[X\\]][(R1).k1]")); |
| } |
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| SECTION("simple_v3_event") |
| { |
| REQUIRE(dm->loadModel(getTestFile("test-data/simple_v3_event.cps"), NULL) == true); |
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| REQUIRE(verify_cn(dm, "CN=Root,Model=New Model,Vector=Compartments[compartment],Reference=InitialVolume")); |
| REQUIRE(verify_cn(dm, "CN=Root,Vector=TaskList[Sensitivities],Problem=Sensitivities,Array=Sensitivities array[\\[C\\]][Values\\[X\\].InitialValue]")); |
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| auto* task = dynamic_cast<CSensTask*>(&((*dm->getTaskList())["Sensitivities"])); |
| REQUIRE(task != nullptr); |
| auto* prob = dynamic_cast<CSensProblem*>(task->getProblem()); |
| REQUIRE(prob != nullptr); |
| REQUIRE(prob->getNumberOfVariables() == 2); |
| prob->setTargetFunctions({CObjectLists::NON_CONST_METAB_NUMBERS }); |
| prob->changeVariables(0, {CObjectLists::ALL_LOCAL_PARAMETER_VALUES }); |
| prob->changeVariables(1, {CObjectLists::EMPTY_LIST }); |
| task->updateMatrices(); |
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| auto* ref = dynamic_cast<const CArrayElementReference*>(dm->getObject(CCommonName("CN=Root,Vector=TaskList[Sensitivities],Problem=Sensitivities,Array=Sensitivities array[A.ParticleNumber][(reaction).k1]"))); |
| auto* obj = (double*)ref->getValuePointer(); |
| auto cn = ref->getCN(); |
| REQUIRE(verify_cn(dm, "CN=Root,Vector=TaskList[Sensitivities],Problem=Sensitivities,Array=Sensitivities array[A.ParticleNumber][(reaction).k1]")); |
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| auto registeredCN = cn; |
| registeredCN.sanitizeObjectNames(); |
| REQUIRE(cn == registeredCN); |
| } |
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| CRootContainer::removeDatamodel(dm); |
| } |
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