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COPASI / data /tests /test_get_object_from_name.cpp
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// Copyright (C) 2021 - 2022 by Pedro Mendes, Rector and Visitors of the
// University of Virginia, University of Heidelberg, and University
// of Connecticut School of Medicine.
// All rights reserved.
#include "catch.hpp"
extern std::string getTestFile(const std::string & fileName);
#include <copasi/CopasiTypes.h>
TEST_CASE("1: loading example files, and resolve name", "[copasi]")
{
auto * dm = CRootContainer::addDatamodel();
REQUIRE(dm != nullptr);
SECTION("brusselator example")
{
REQUIRE(dm->loadModel(getTestFile("test-data/brusselator.cps"), NULL) == true);
auto * mv = dm->getModel()->createModelValue("mv_1", 1.0);
dm->getModel()->compileIfNecessary(NULL);
dm->getModel()->applyInitialValues();
// species
auto * object = dm->findObjectByDisplayName("[X]");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("X.ParticleNumber");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("[X]_0");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("X.InitialParticleNumber");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("X.Rate");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("X.ParticleNumberRate");
REQUIRE(object != nullptr);
// compartments
object = dm->findObjectByDisplayName("Compartments[compartment].InitialVolume");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("Compartments[compartment].Volume");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("Compartments[compartment].Rate");
REQUIRE(object != nullptr);
// reactions
object = dm->findObjectByDisplayName("(R1).k1");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("(R1).Flux");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("(R1).ParticleFlux");
REQUIRE(object != nullptr);
// parameters
object = dm->findObjectByDisplayName("Values[mv_1].InitialValue");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("Values[mv_1]");
REQUIRE(object != nullptr);
object = dm->findObjectByDisplayName("Values[mv_1].Rate");
REQUIRE(object != nullptr);
// time
object = dm->findObjectByDisplayName("Time");
REQUIRE(object != nullptr);
}
CRootContainer::removeDatamodel(dm);
}