## @file setup.py ## @brief Python distutils code for COPASI Python module ## @author Frank Bergmann (fbergman@caltech.edu) ## import glob import os import sys import shutil import platform # remove -Wstrict-prototypes (to compile with clang on osx) from distutils.sysconfig import get_config_vars (opt,) = get_config_vars('OPT') if opt != None: os.environ['OPT'] = " ".join( flag for flag in opt.split() if flag != '-Wstrict-prototypes' ) # post processing, if needed here shutil.copyfile('./script/COPASI.py', './COPASI/__init__.py') # figure out the os basepath = os.path.abspath('./') + '/' current_os = 'LINUX' #initialize definitions definitions = [('Linux', None)] # since those are static libraries, order is important # order by usage: # -COPASISE, uses all libraries # -SED-ML uses, SBML, which uses expat ... # libs = ['COPASISE', 'lapack', 'blas','f2c', 'raptor', 'sedml-static', 'sbml-static','expat'] if platform.system() == 'Darwin': current_os = 'DARWIN' elif platform.system() == 'Windows': current_os = 'WIN32' libs = ['libblas', 'libexpat', 'libf2c', 'liblapack', 'libraptor', 'libsbml-static', 'libsedml-static'] # the dependencies dir, is just the bin dir from copasi-dependencies # additionally the libCOPASISE.a from a build is copied into lib dependency_dir = basepath + current_os + '/dependencies-32/' if sys.maxint > 2147483647: dependency_dir = basepath + current_os + '/dependencies-64/' # on DARWIN use universal binaries if platform.system() == 'Darwin': dependency_dir = basepath + current_os + '/dependencies/' lib_dirs = [dependency_dir + 'lib', '/usr/lib'] # the cpp-api folder contains all header files of copasi inc_dirs = [dependency_dir + 'include', basepath + "src", basepath + "src/copasi", basepath + "cpp-api", basepath + "cpp-api/copasi", "."] package_name = '"COPASI"' definitions += [ ('COPASI_SEDML', None), ('HAVE_BLASWRAP_H', None), ('HAVE_CLAPACK_H', None), ('HAVE_MML', None), ('NO_BLAS_WRAP', None), ('WITH_PE_EVENT_CREATION', None), ('binding_python_lib_EXPORTS', None) ] cfiles = [basepath + 'src/copasi_wrapper.cpp' ] from distutils.core import setup, Extension setup(name = "python-copasi", version = "@VERSION@", description = "COPASI Python API", long_description = ("COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie's stochastic simulation algorithm; arbitrary discrete events can be included in such simulations."), license = "Artistic License", author = "COPASI Team", author_email = "copasi-devel@copasi.org", url = "http://copasi.org", packages = ["COPASI"], package_dir = {'COPASI': 'COPASI'}, ext_package = "COPASI", ext_modules = [Extension("_COPASI", sources = cfiles, define_macros = definitions + [(current_os, None)], include_dirs = inc_dirs, libraries = libs, library_dirs = lib_dirs )] )