#! /usr/bin/env python # Tester, a python script for automatically testing CopasiSE # Author: willy # Date: 20.02.2008 import os # import sys # import getopt # for getting user's arguments import subprocess # for running CopasiSE import glob # for making file lists from directory import string # for handling string import time import NumDiff import shutil # ---------- # listInputDirs : the list of input directories name including path, eq. ../COPASI_TestSuite/Tests/TEST_000001 # listOutputDirs : the list of output directories name including path, eq. ../COPASI_TestSuite/Results/Build25Mac/TEST_000001 # ---------- global listInputDirs, listOutputDirs listInputDirs = [] listOutputDirs = [] # --- Checking Function --- def getInputDirs(source_dir): result = [] infoTFile = os.path.join( source_dir, 'TestInfo.txt') # Check the existence of TestInfo.txt if os.path.exists(infoTFile): # still on ../Tests file = open(infoTFile, 'r') listLine = file.read().split('\n') # list of lines without \n at the end. file.close() for line in listLine[2:]: if line.strip().startswith('#'): continue; result.append(os.path.join(source_dir, line)) else: # already on ../Test/ result.append(source_dir) return result def check(args): listOutputDirs = [] # Create and fill listOutputDirs by replacing the directory of inputDir with more proper one for dir in listInputDirs: listOutputDirs.append( os.path.join( dir.replace('Tests', os.path.join('Results', args[1])) )) # Check the existence of output directory; create it if necessary for outputDir in listOutputDirs: if not os.path.exists(outputDir): os.makedirs(outputDir) # --- Main Function --- def main(args): """ =================================================================================================== PURPOSE: The script aims at testing the given model(s) automatically through command line CopasiSE. It enables one to test the model(s) saved in more than one directories. --------------------------------------------------------------------------------------------------- USAGE: python Tester.py where: DIR_OF_CopasiSE : Directory containing CopasiSE binary file RELEASE_OS : Release-OS with format (eg. Build28Mac for Build28 under Mac OS) DIR_OF_TEST : Directory containing test file(s) -> only one directory is able to test DIR_OF_TestInfo : Directory containing TestInfo.txt -> at least one directory is able to test =================================================================================================== """ # DIR_OF_RESULT : Directory containing result(s) of testing try: opts,args = getopt.getopt(args, 'f:', ['font-size=']) except getopt.GetoptError: print (__doc__) sys.exit(1) if len(args) < 3: print (__doc__) exit() # Check the given arguments # Check the existence of CopasiSE binary file binFile = args[0] out_dir = args[1] source_dir = args[2] if os.path.exists(binFile) is False: print ('Fatal Error: %s does not exist.' % (binFile)) exit() # Create and fill listInputDirs by taking information from TestInfo.txt listInputDirs = getInputDirs(source_dir) for dir in listInputDirs: testDir(dir, binFile, source_dir, out_dir) def getCopasiFile(dir): try: return glob.glob(dir + '/*.cps')[0]; except: print ('\n-> %s contains no cps file <-\n'% (dir)) sys.exit(1) def testDir(dir, binFile, source_dir, outDir): testName = os.path.basename(dir) if not os.path.exists(outDir): os.makedirs(outDir) print ('testing {0}'.format(testName)) # execute copasise par = [binFile, '--nologo', getCopasiFile(dir)] subprocess.Popen(par[0:3]).wait() # wait until CopasiSE finish # Move the output file from the input directory to the output one computedResults = [] for name in glob.glob(dir + '/*_result*.txt'): target = os.path.join(outDir, os.path.basename(name)) if os.path.exists(target): os.remove(target) shutil.copy(name, target) os.remove(name) computedResults.append(target) if len(computedResults) == 0: print ('... no result produced, please verify that the test produces a report file "*_result*.txt"') sys.exit(1) # Prepare report file; delete it if it exists already report = os.path.join(outDir, 'report.txt') for name in computedResults: basename = os.path.basename(name) refDir = '' if testName not in source_dir: refDir = source_dir.replace('Tests', os.path.join('References', testName )) else: refDir = source_dir.replace('Tests', 'References') if not os.path.exists(refDir): print ("... no reference data for test! missing dir: {0}".format(refDir)) sys.exit(1) # between 'results' and 'result' if basename.find('results') != -1: cmpFile = name.replace('_results.txt', '_diff.txt') else: cmpFile = name.replace('_result.txt', '_diff.txt') for refName in glob.glob(refDir + '/*.txt'): different = NumDiff.runTest(refName, name, cmpFile, report, testName) if different: print(" ... Different ") else: print (" ... OK") # --- Run as main --- if __name__ == '__main__': args = sys.argv[1:] main(args)