CheXWorld / data /models /utils.py
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import torch
import torch.distributed as dist
import math
import warnings
from torch.nn.init import _calculate_fan_in_and_fan_out
from einops import rearrange
def token_to_grid(h):
B, L, C = h.shape
H = int(L ** 0.5)
# return rearrange(h, 'b (h w) c -> b c h w', h=int(h.shape[1] ** 0.5), w=int(h.shape[1] ** 0.5))
return h.view(B, H, H, C).permute(0, 3, 1, 2)
class AllReduce(torch.autograd.Function):
@staticmethod
def forward(ctx, x):
if (
dist.is_available()
and dist.is_initialized()
and (dist.get_world_size() > 1)
):
x = x.contiguous() / dist.get_world_size()
dist.all_reduce(x)
return x
@staticmethod
def backward(ctx, grads):
return grads
def repeat_interleave_batch(x, B, repeat):
# [N*B] -> [N*R*B]
N = len(x) // B
x = torch.cat([
torch.cat([x[i*B:(i+1)*B] for _ in range(repeat)], dim=0)
for i in range(N)
], dim=0)
return x
def apply_masks(x, masks):
"""
:param x: tensor of shape [B (batch-size), N (num-patches), D (feature-dim)]
:param masks: list of tensors containing indices of patches in [N] to keep
"""
all_x = []
for m in masks:
mask_keep = m.unsqueeze(-1).repeat(1, 1, x.size(-1))
all_x += [torch.gather(x, dim=1, index=mask_keep)]
return torch.cat(all_x, dim=0)
def compute_var(y):
y = y.view(-1, y.size(-1))
if dist.is_initialized():
zc = torch.tensor(y.size(0)).cuda()
zs = y.sum(dim=0)
zss = (y ** 2).sum(dim=0)
dist.all_reduce(zc)
dist.all_reduce(zs)
dist.all_reduce(zss)
var = zss / (zc - 1) - (zs ** 2) / (zc * (zc - 1))
return torch.sqrt(var + 1e-6).mean()
else:
return torch.sqrt(y.var(dim=0) + 1e-6).mean()
def _trunc_normal_(tensor, mean, std, a, b):
# Cut & paste from PyTorch official master until it's in a few official releases - RW
# Method based on https://people.sc.fsu.edu/~jburkardt/presentations/truncated_normal.pdf
def norm_cdf(x):
# Computes standard normal cumulative distribution function
return (1. + math.erf(x / math.sqrt(2.))) / 2.
if (mean < a - 2 * std) or (mean > b + 2 * std):
warnings.warn("mean is more than 2 std from [a, b] in nn.init.trunc_normal_. "
"The distribution of values may be incorrect.",
stacklevel=2)
# Values are generated by using a truncated uniform distribution and
# then using the inverse CDF for the normal distribution.
# Get upper and lower cdf values
l = norm_cdf((a - mean) / std)
u = norm_cdf((b - mean) / std)
# Uniformly fill tensor with values from [l, u], then translate to
# [2l-1, 2u-1].
tensor.uniform_(2 * l - 1, 2 * u - 1)
# Use inverse cdf transform for normal distribution to get truncated
# standard normal
tensor.erfinv_()
# Transform to proper mean, std
tensor.mul_(std * math.sqrt(2.))
tensor.add_(mean)
# Clamp to ensure it's in the proper range
tensor.clamp_(min=a, max=b)
return tensor
def trunc_normal_(tensor, mean=0., std=1., a=-2., b=2.):
# type: (Tensor, float, float, float, float) -> Tensor
r"""Fills the input Tensor with values drawn from a truncated
normal distribution. The values are effectively drawn from the
normal distribution :math:`\mathcal{N}(\text{mean}, \text{std}^2)`
with values outside :math:`[a, b]` redrawn until they are within
the bounds. The method used for generating the random values works
best when :math:`a \leq \text{mean} \leq b`.
NOTE: this impl is similar to the PyTorch trunc_normal_, the bounds [a, b] are
applied while sampling the normal with mean/std applied, therefore a, b args
should be adjusted to match the range of mean, std args.
Args:
tensor: an n-dimensional `torch.Tensor`
mean: the mean of the normal distribution
std: the standard deviation of the normal distribution
a: the minimum cutoff value
b: the maximum cutoff value
Examples:
>>> w = torch.empty(3, 5)
>>> nn.init.trunc_normal_(w)
"""
with torch.no_grad():
return _trunc_normal_(tensor, mean, std, a, b)
def trunc_normal_tf_(tensor, mean=0., std=1., a=-2., b=2.):
# type: (Tensor, float, float, float, float) -> Tensor
r"""Fills the input Tensor with values drawn from a truncated
normal distribution. The values are effectively drawn from the
normal distribution :math:`\mathcal{N}(\text{mean}, \text{std}^2)`
with values outside :math:`[a, b]` redrawn until they are within
the bounds. The method used for generating the random values works
best when :math:`a \leq \text{mean} \leq b`.
NOTE: this 'tf' variant behaves closer to Tensorflow / JAX impl where the
bounds [a, b] are applied when sampling the normal distribution with mean=0, std=1.0
and the result is subsquently scaled and shifted by the mean and std args.
Args:
tensor: an n-dimensional `torch.Tensor`
mean: the mean of the normal distribution
std: the standard deviation of the normal distribution
a: the minimum cutoff value
b: the maximum cutoff value
Examples:
>>> w = torch.empty(3, 5)
>>> nn.init.trunc_normal_(w)
"""
with torch.no_grad():
_trunc_normal_(tensor, 0, 1.0, a, b)
tensor.mul_(std).add_(mean)
return tensor
def variance_scaling_(tensor, scale=1.0, mode='fan_in', distribution='normal'):
fan_in, fan_out = _calculate_fan_in_and_fan_out(tensor)
if mode == 'fan_in':
denom = fan_in
elif mode == 'fan_out':
denom = fan_out
elif mode == 'fan_avg':
denom = (fan_in + fan_out) / 2
variance = scale / denom
if distribution == "truncated_normal":
# constant is stddev of standard normal truncated to (-2, 2)
trunc_normal_tf_(tensor, std=math.sqrt(variance) / .87962566103423978)
elif distribution == "normal":
with torch.no_grad():
tensor.normal_(std=math.sqrt(variance))
elif distribution == "uniform":
bound = math.sqrt(3 * variance)
with torch.no_grad():
tensor.uniform_(-bound, bound)
else:
raise ValueError(f"invalid distribution {distribution}")
def lecun_normal_(tensor):
variance_scaling_(tensor, mode='fan_in', distribution='truncated_normal')