import torch.utils.data as data import os from PIL import Image import torch import logging import numpy as np from .data_path import get_dataset_path from sklearn.model_selection import train_test_split VINDR_CLASSES = ['Lung Opacity', 'Cardiomegaly', 'Pleural thickening', 'Aortic enlargement', 'Pulmonary fibrosis', 'Tuberculosis',] VIN_DEFAULT_PATH = get_dataset_path('vinbigdata') class VinDrNew(data.Dataset): def __init__(self, root=VIN_DEFAULT_PATH, transform=None, data_pct=1.0, split='train', data_postfix='', return_label=True, dataset_seed=42): super().__init__() root = root + data_postfix logging.info(f'VinDr from {root}') assert split in ('train', 'val', 'test') self.classes = None self.num_classes = 6 dataset_split = 'test' if split == 'test' else 'train' with open(f'annotations/vindr/VinDrCXR_{dataset_split}_pe_global_one.txt', 'r') as f: lines = f.readlines() self.img_list = [] self.labels = [] for l in lines: words = l.strip().split(' ') words = [w for w in words if w != ''] self.img_list.append(os.path.join(root, 'images', words[0]+'.jpg')) self.labels.append([int(l) for l in words[1:]]) if split != 'test': train_img_list, val_img_list, train_labels, val_labels = train_test_split(self.img_list, self.labels, train_size=0.9, random_state=dataset_seed) logging.info(f'Dataset Seed: {dataset_seed}') if split == 'train': self.img_list, self.labels = train_img_list, train_labels else: self.img_list, self.labels = val_img_list, val_labels if data_pct < 1.0 and split == 'train': state = np.random.RandomState(seed=dataset_seed) num_data = len(self.img_list) indices = state.choice(np.arange(num_data), size=int(data_pct * num_data), replace=False) self.img_list = [self.img_list[idx] for idx in indices] self.labels = [self.labels[idx] for idx in indices] self.labels = np.asarray(self.labels).astype(np.float32) logging.info(f'VinDr New {split} split: {len(self.img_list)} images') self.transform = transform self.return_label = return_label def __len__(self): return len(self.img_list) def __getitem__(self, index): img_path, label = self.img_list[index], self.labels[index] img = Image.open(img_path).convert('RGB') if self.transform != None: img = self.transform(img) if not self.return_label: return img else: return img, torch.FloatTensor(label)