File size: 2,078 Bytes
efd3676 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 | # Apply my patches to the swig_wrapper
# These patches are likely specific for the CoRC packages
# which is why I did not commit them upstream to COPASI
wrapper_path <- file.path("..", "R", "swig_wrapper.R")
wrapper_lines <- readLines(wrapper_path)
# replace all checks for null pointers
# previously this was done by an awkward workaround and string comparison
# now use isnullptr::isnullptr
wrapper_lines <- stringr::str_replace_all(
wrapper_lines,
'capture\\.output\\((\\w+?)\\) %in% c\\("<pointer: 0x0>", "<pointer: \\(nil\\)>"\\)',
'isnullptr(\\1)'
)
wrapper_lines <- stringr::str_replace_all(
wrapper_lines,
'!\\(isnullptr\\((\\w+?)\\)\\)',
'!isnullptr(\\1)'
)
# Make all .Call use the COPASI DLLInfo for addressing
wrapper_lines <- stringr::str_replace_all(
wrapper_lines,
"\\.Call\\('(.*?)'(.*), PACKAGE='COPASI'\\);",
".Call(COPASI$`\\1`\\2);"
)
# remove R_SWIG_getCallbackFunctionStack which is called out in R CMD check
i_empty_lines <- which(wrapper_lines == "")
i_start <- which(wrapper_lines == "R_SWIG_getCallbackFunctionStack =")
stopifnot(length(i_start) == 1)
i_end <- i_empty_lines[i_empty_lines > i_start][1]
wrapper_lines <- wrapper_lines[-(i_start:i_end)]
# remove R_SWIG_addCallbackFunctionStack which is called out in R CMD check
i_empty_lines <- which(wrapper_lines == "")
i_start <- which(wrapper_lines == "R_SWIG_addCallbackFunctionStack =")
stopifnot(length(i_start) == 1)
i_end <- i_empty_lines[i_empty_lines > i_start][1]
wrapper_lines <- wrapper_lines[-(i_start:i_end)]
# # rename COPASI lib to CoRC
# wrapper_lines <- stringr::str_replace_all(
# wrapper_lines,
# "\\.Call\\((.*), PACKAGE='COPASI'\\);",
# paste0(".Call(\\1, PACKAGE='", pkgname, "');")
# )
# remove swig debug info containing personal folder structure
wrapper_lines <- stringr::str_replace_all(
wrapper_lines,
'^##.*R.i$',
""
)
# using wb write mode allows to use lf line ending on windows
wrapper_con <- file(wrapper_path, open = "wb")
writeLines(wrapper_lines, wrapper_con)
close(wrapper_con)
rm(wrapper_path, wrapper_con, wrapper_lines)
|