| --- |
| title: "0-dev_setup" |
| output: html_notebook |
| --- |
|
|
| This file contains various helpers for the development environment. |
| Use this to load the development environment and frequently run reset_copasi() to load code changes. |
|
|
| ```{r setup} |
| knitr::opts_knit$set(root.dir = normalizePath("..")) |
| Sys.setenv(COPASI_LIB_PATH = normalizePath(file.path("..", "libs", .Platform$r_arch, paste0("COPASI", .Platform$dynlib.ext)))) |
|
|
| # reset_copasi(), ls_corc(pattern), inspect(object) |
| source("dev_tools.R", echo = FALSE) |
| current_example = 3L |
| ``` |
|
|
| # Document the Package |
|
|
| ```{r, include=FALSE} |
| devtools::document() |
| pkgdown::build_reference() |
| ``` |
|
|
| # Check the Package |
|
|
| ```{r, include=FALSE} |
| devtools::test() |
| ``` |
| ```{r, include=FALSE} |
| devtools::check(check_dir = "../CoRC.Rcheck") |
| ``` |
|
|
| # Build the Package |
|
|
| ```{r, include=FALSE} |
| devtools::build() |
| ``` |
|
|
| # Install the Package |
|
|
| ```{r, include=FALSE} |
| devtools::install() |
| ``` |
| ```{r, include=FALSE} |
| install.packages(".", repos = NULL, type = "source", INSTALL_opts = "--no-multiarch --with-keep.source --install-tests") |
| ``` |
|
|
| # Load the Package |
|
|
| ```{r, include=FALSE} |
| library(CoRC) |
| ``` |
|
|
| # Load Development Environment |
|
|
| ```{r, include=FALSE} |
| library(assertthat) |
| library(purrr) |
| library(ggplot2) |
|
|
| reset_copasi() |
| ``` |
|
|
| # Reset COPASI |
|
|
| ```{r, include=FALSE} |
| reset_copasi() |
| ``` |
|
|
| # Tests |
|
|
| ```{r} |
|
|
| ``` |
|
|
