import numpy as np import torch import torch.nn.functional as F import networkx as nx import matplotlib as mpl import matplotlib.pyplot as plt import matplotlib.colors as mcolors from matplotlib.colors import LinearSegmentedColormap from torch_geometric.data import Data from torch_geometric.utils import to_networkx from swomo.data.utils import get_cadis_float_cmap, get_cholecseg8k_float_cmap, get_cataract1k_float_cmap def visualize_graph_list(data_list, image_shape: tuple, num_classes: int, class_names, node_size=200, save_path: str = None, palette=None): """ Visualizes a list of graphs with nodes colored by their class, keeping colors consistent for class IDs. Args: data_list (list[Data]): A list of PyTorch Geometric Data objects representing the graphs to visualize. image_shape (tuple): The shape of the original image (height, width). num_classes (int): The number of different classes for coloring nodes. class_names (list[str]): A list of class names corresponding to each class. save_path (str, optional): Path to save the visualized graph. If None, the graph is not saved. palette: The palette to use for coloring nodes based on their class. """ # Create a color map for the nodes based on their class. Default to 'viridis' if no cmap provided. if palette is None: cmap = 'viridis' else: cmap = LinearSegmentedColormap.from_list('CustomCMAP', palette.numpy()[:num_classes - 1]) # w/o ignore mask_cmap = plt.cm.get_cmap(cmap, num_classes) class_colors = mcolors.ListedColormap(mask_cmap(np.linspace(0, 1 + 1 / num_classes, num_classes))) num_graphs = len(data_list) fig, axes = plt.subplots(1, num_graphs, figsize=(5 * num_graphs, 4), frameon=False) for idx, graph_data in enumerate(data_list): ax = axes[idx] if num_graphs > 1 else axes # Convert to NetworkX graph if necessary if isinstance(graph_data, Data): graph = to_networkx(graph_data.cpu(), to_undirected=True) # Manually transfer node features from PyG Data to NetworkX for node, data in enumerate(graph_data.x.cpu()): graph.nodes[node]['features'] = data else: graph = graph_data try: pos = {node: (data['features'][-5] * image_shape[1], (1 - data['features'][-4]) * image_shape[0]) for node, data in graph.nodes(data=True)} except KeyError: pos = {node: (data['x'][-5] * image_shape[1], (1 - data['x'][-4]) * image_shape[0]) for node, data in graph.nodes(data=True)} # Add labels to the nodes (e.g., class name and node ID) for node, (x, y) in pos.items(): features = graph.nodes[node]['features'] class_id = np.argmax(features[:num_classes]) # Extract class ID from one-hot vector # w/o ignore class_name = class_names[class_id] # Get class name based on class ID node_color = class_colors(class_id / num_classes) # Map class ID to color nx.draw_networkx_nodes(graph, pos, nodelist=[node], node_size=node_size, node_color=[node_color], ax=ax) ax.text(x, y, f'{class_name}', fontsize=20, ha='right', va='center') # Draw edges nx.draw_networkx_edges(graph, pos, edge_color="grey", alpha=0.3, width=1.8, ax=ax) # ax.set_aspect(1) # ax.set_title(f"Graph {idx + 1}") # plt.tight_layout() if save_path is not None: plt.savefig(save_path, format='png') plt.close() plt.show() if __name__ == "__main__": # graph1 = torch.load("/path/to/dataset/Cholec-80/scene_graph/video01/0000003904.pt") # graph2 = torch.load("/path/to/dataset/Cholec-80/scene_graph/video01/0000003906.pt") # graph3 = torch.load("/path/to/dataset/Cholec-80/scene_graph/video01/0000003907.pt") # class_names = ["Black Background", "Abdominal Wall", "Liver", "Gastrointestinal Tract", "Fat", "Grasper", "Connective Tissue", "Blood", "Cystic Dust", "L-hook Electrocautery", "Gallblader", "Hepatic Vein", "Liver Ligament"] # palette = get_cholecseg8k_float_cmap() # num_classes = 13 # graph1 = torch.load("/path/to/dataset/Cataracts-50/scene_graph/train47/0000000696.pt") # graph2 = torch.load("/path/to/dataset/Cataracts-50/scene_graph/train47/0000000704.pt") # graph3 = torch.load("/path/to/dataset/Cataracts-50/scene_graph/train47/0000000711.pt") # class_names = ["Pupil", "Surg. Tape", "Hand", "Eye Retr.", "Iris", "Skin", "Cornea", "Cannula", "Cap. Cystotome", "Tissue Forceps", "Primary Knife", "Ph. Handpiece", "Lens Injector", "I/A Handpiece", "Secondary Knife", "Micromanipulator", "Cap. Forceps", "Ignore"] # palette = get_cadis_float_cmap() # num_classes = 18 graph1 = torch.load("/path/to/dataset/Cataract-1K/scene_graph/case_2613/0000000040.pt") graph2 = torch.load("/path/to/dataset/Cataract-1K/scene_graph/case_2613/0000000045.pt") graph3 = torch.load("/path/to/dataset/Cataract-1K/scene_graph/case_2613/0000000050.pt") class_names = ["Background", "Cornea", "Pupil", "Lens", "Slit Knife", "Gauge", "Capsulorhexis Cystotome", "Spatula", "Phacoemulsification Tip", "Irrigation-Aspiration", "Lens Injector", "Incision Knife", "Katena Forceps", "Capsulorhexis Forceps"] palette = get_cataract1k_float_cmap() num_classes = 14 save_path = "graph.png" visualize_graph_list(data_list = [graph1, graph2, graph3], image_shape = (128,160), num_classes = num_classes, class_names = class_names, node_size=400, save_path = save_path, palette=palette)