sph_dataset / examples /example_classification.py
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"""
Example 2 — Classification: Keyhole vs Conduction Mode
Binary classifier predicting melting regime from four process parameters.
Labels are derived automatically from melt-pool depth (zmax − zmin) in
monitor/position-bounds_melt.dat: experiments whose steady-state depth
exceeds the dataset median are labeled Keyhole (1), the rest Conduction (0).
Rows with sentinel values (|val| > 1e30) are tagged "Initial Emptiness" and
excluded from depth computation. The dataset is then balanced via random
undersampling of the majority class before any ML step.
Three models evaluated via leave-one-out cross-validation:
1. Logistic Regression
2. Random Forest
3. SVM (RBF kernel)
Set N_SUBSET to a small number (e.g. 30) so a reviewer can run this quickly.
Set N_SUBSET = None to use the full balanced dataset.
Outputs saved to runs/classification_<timestamp>/:
classification_diagnostics.png — LOO confusion matrices + feature relevance
run.log — full training log
This is a proof-of-concept, not a benchmark.
"""
import logging
import random
import sys
from datetime import datetime
from pathlib import Path
import numpy as np
from sklearn.base import clone
from sklearn.ensemble import RandomForestClassifier
from sklearn.inspection import permutation_importance
from sklearn.linear_model import LogisticRegression
from sklearn.metrics import ConfusionMatrixDisplay
from sklearn.model_selection import LeaveOneOut
from sklearn.pipeline import make_pipeline
from sklearn.preprocessing import StandardScaler
from sklearn.svm import SVC
import matplotlib.pyplot as plt
# ------------------------------------------------------------------
# Config ← edit DATA_DIRS to point at your data directories
# ------------------------------------------------------------------
DATA_DIRS = [
Path(__file__).parent.parent / "rnl" / "final_data_processed",
Path(__file__).parent.parent / "rnl" / "lrz_data_new_format",
]
OUT_ROOT = Path(__file__).parent.parent / "runs"
N_SUBSET = 30 # reviewer-friendly subset size (None = full dataset)
N_STABLE = 50 # last N valid timesteps for steady-state depth estimate
RANDOM_SEED = 42
INPUT_PARAMS = ["laser_power", "scan_speed", "laser_spot_size", "substrate_temp"]
MODEL_NAMES = ["LogReg", "RandomForest", "SVM-RBF"]
# ------------------------------------------------------------------
# Logger
# ------------------------------------------------------------------
class _ColorFormatter(logging.Formatter):
_COLORS = {logging.DEBUG: "\033[37m", logging.INFO: "\033[32m",
logging.WARNING: "\033[33m", logging.ERROR: "\033[31m"}
_RESET = "\033[0m"; _BOLD = "\033[1m"
def format(self, record):
color = self._COLORS.get(record.levelno, self._RESET)
t = self.formatTime(record, "%H:%M:%S")
return f"{self._BOLD}{t}{self._RESET} {color}{record.levelname:<8}{self._RESET} {record.getMessage()}"
run_id = datetime.now().strftime("%Y%m%d_%H%M%S")
out_dir = OUT_ROOT / f"classification_{run_id}"
out_dir.mkdir(parents=True, exist_ok=True)
_log = logging.getLogger("clf")
_log.setLevel(logging.DEBUG)
_h = logging.StreamHandler(sys.stdout); _h.setFormatter(_ColorFormatter()); _log.addHandler(_h)
_f = logging.FileHandler(out_dir / "run.log")
_f.setFormatter(logging.Formatter("%(asctime)s %(levelname)-8s %(message)s", datefmt="%H:%M:%S"))
_log.addHandler(_f)
_log.info("=" * 60)
_log.info(f"Run ID : {run_id}")
_log.info(f"Results : {out_dir}")
_log.info("=" * 60)
# ------------------------------------------------------------------
# 1. Load experiments and auto-label
# ------------------------------------------------------------------
def load_params(sim_dir: Path) -> dict | None:
"""Read process parameters from parameters.json."""
pjson = sim_dir / "parameters.json"
if not pjson.exists():
return None
try:
raw = __import__("json").loads(pjson.read_text())
return {
"laser_power": float(raw["laser_power"]["value"]),
"scan_speed": float(raw["scan_speed_x"]["value"]),
"laser_spot_size": float(raw["laser_spot_size"]["value"]),
"substrate_temperature": float(raw["substrate_temperature"]["value"]),
}
except Exception:
return None
def melt_depth(sim_dir: Path, n_stable: int) -> float | None:
"""Mean melt-pool depth (zmax − zmin) over the last n_stable valid rows.
Rows where any value |v| > 1e30 are Initial Emptiness sentinels → excluded.
"""
dat = sim_dir / "monitor" / "position-bounds_melt.dat"
if not dat.exists():
return None
try:
b = np.loadtxt(dat, delimiter=",")
if b.ndim == 1:
b = b.reshape(1, -1)
b = b[~np.any(np.abs(b) > 1e30, axis=1)] # drop Initial Emptiness rows
if len(b) < 10:
return None
depth = (b[-n_stable:, 5] - b[-n_stable:, 4]).mean() # zmax - zmin
return depth if depth > 0 else None
except Exception:
return None
all_sims = []
for data_dir in DATA_DIRS:
sims = sorted(data_dir.iterdir()) if data_dir.is_dir() else []
_log.info(f"Scanning {data_dir}{len(sims)} dirs")
all_sims.extend(sims)
_log.info(f"Total simulation directories: {len(all_sims)}")
X_list, depth_list, names = [], [], []
skipped = 0
for sim_dir in all_sims:
if not sim_dir.is_dir():
continue
params = load_params(sim_dir)
if params is None:
skipped += 1; continue
d = melt_depth(sim_dir, N_STABLE)
if d is None:
skipped += 1; continue
X_list.append(list(params.values()))
depth_list.append(d)
names.append(sim_dir.name)
_log.info(f"Valid experiments: {len(X_list)} (skipped {skipped})")
X_all = np.array(X_list)
depths_all = np.array(depth_list)
median_depth = np.median(depths_all)
y_all = (depths_all > median_depth).astype(int)
_log.info(f"Depth threshold (median): {median_depth*1e6:.2f} µm")
_log.info(f"Keyhole: {y_all.sum()} Conduction: {(y_all==0).sum()}")
# ------------------------------------------------------------------
# 2. Balance classes (undersample majority) then optionally subset
# ------------------------------------------------------------------
rng = random.Random(RANDOM_SEED)
kh_idx = np.where(y_all == 1)[0].tolist()
cd_idx = np.where(y_all == 0)[0].tolist()
n_bal = min(len(kh_idx), len(cd_idx))
rng.shuffle(kh_idx); rng.shuffle(cd_idx)
balanced_idx = sorted(kh_idx[:n_bal] + cd_idx[:n_bal])
X_bal = X_all[balanced_idx]
y_bal = y_all[balanced_idx]
_log.info(f"After balancing: {len(y_bal)} experiments ({n_bal} Keyhole + {n_bal} Conduction)")
if N_SUBSET is not None and N_SUBSET < len(y_bal):
# Stratified subsample: N_SUBSET/2 from each class
n_each = N_SUBSET // 2
kh_sub = [i for i in balanced_idx if y_all[i] == 1][:n_each]
cd_sub = [i for i in balanced_idx if y_all[i] == 0][:n_each]
sub_idx = sorted(kh_sub + cd_sub)
X = X_all[sub_idx]
y = y_all[sub_idx]
_log.info(f"Reviewer subset: {len(y)} experiments ({n_each} Keyhole + {n_each} Conduction)")
else:
X, y = X_bal, y_bal
_log.info("Using full balanced dataset")
# ------------------------------------------------------------------
# 3. Model definitions
# ------------------------------------------------------------------
def make_models():
return [
make_pipeline(StandardScaler(), LogisticRegression(max_iter=1000)),
make_pipeline(StandardScaler(), RandomForestClassifier(n_estimators=200, random_state=RANDOM_SEED)),
make_pipeline(StandardScaler(), SVC(kernel="rbf", probability=True, random_state=RANDOM_SEED)),
]
# ------------------------------------------------------------------
# 4. LOO cross-validation
# ------------------------------------------------------------------
splits = list(LeaveOneOut().split(X))
n_folds = len(splits)
y_preds = {}
for name, base_pipe in zip(MODEL_NAMES, make_models()):
preds = np.empty(n_folds, dtype=int)
correct = 0
_log.info(f"[{name}] LOO CV ({n_folds} folds)")
for fold, (train_idx, test_idx) in enumerate(splits):
pipe = clone(base_pipe)
pipe.fit(X[train_idx], y[train_idx])
preds[test_idx] = pipe.predict(X[test_idx])
correct += int(preds[test_idx[0]] == y[test_idx[0]])
if (fold + 1) % 10 == 0 or fold == n_folds - 1:
_log.info(f" fold {fold+1:3d}/{n_folds} running acc = {correct/(fold+1):.3f}")
_log.info(f"[{name}] Final LOO accuracy: {(preds==y).mean():.3f}")
y_preds[name] = preds
# ------------------------------------------------------------------
# 5. Fit on full subset for importance plots
# ------------------------------------------------------------------
_log.info("Fitting on full subset for feature importance ...")
fitted = {}
for name, pipe in zip(MODEL_NAMES, make_models()):
pipe.fit(X, y)
fitted[name] = pipe
def feature_importances(name, pipe):
if name == "LogReg":
return pipe.named_steps["logisticregression"].coef_[0]
if name == "RandomForest":
return pipe.named_steps["randomforestclassifier"].feature_importances_
res = permutation_importance(pipe, X, y, n_repeats=30, random_state=0, scoring="accuracy")
imp = res.importances_mean
return imp / (np.abs(imp).max() or 1)
# ------------------------------------------------------------------
# 6. Plots — 2 rows × 3 columns
# ------------------------------------------------------------------
_log.info("Generating plots ...")
fig, axes = plt.subplots(2, 3, figsize=(13, 8))
for col, name in enumerate(MODEL_NAMES):
acc = (y_preds[name] == y).mean()
ConfusionMatrixDisplay.from_predictions(
y, y_preds[name],
display_labels=["Conduction", "Keyhole"],
cmap="Blues", ax=axes[0, col], colorbar=False,
)
axes[0, col].set_title(f"{name} (LOO acc={acc:.3f})")
imp = feature_importances(name, fitted[name])
colors = ["#e06c75" if v < 0 else "#61afef" for v in imp]
axes[1, col].barh(INPUT_PARAMS, imp, color=colors)
axes[1, col].axvline(0, color="k", lw=0.6)
xlabel = ("Standardised coef. (+ → Keyhole)" if name == "LogReg" else
"Mean decrease in impurity" if name == "RandomForest" else
"Permutation importance (norm.)")
axes[1, col].set_xlabel(xlabel)
axes[1, col].set_title(f"{name} — input relevance")
subset_note = f"N={len(y)} (reviewer subset)" if N_SUBSET else f"N={len(y)} (full balanced)"
plt.suptitle(
f"LOO confusion matrices and input relevance — Keyhole vs Conduction [{subset_note}]",
y=1.01,
)
plt.tight_layout()
plot_path = out_dir / "classification_diagnostics.png"
plt.savefig(plot_path, dpi=150, bbox_inches="tight")
_log.info(f"Plot saved → {plot_path}")
plt.show()
_log.info("Done.")