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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 12 new columns ({'km(mM)', 'Commentary[Mutant]', 'Commentary[Cosubstrate]', 'Enzyme', 'km_kcat(mM^-1s^-1)', 'kcat(s^-1)', 'Substrate', 'Organism', 'Reference[Table/Text]', 'ID_gold', 'Commentary[pH]', 'Commentary[Temp]'}) and 18 missing columns ({' Commentary[Mutant] ', ' Unit_Kcat ', 'km_kcat', 'Kcleav', 'kcat', ' Variable_reactant ', ' Commentary[Temp] ', 'Source', ' Unit_Kcleav ', 'Kobs', ' Commentary[Others] ', ' Unit_Km ', ' Ribozyme ', ' Unit_Kcat/Km ', 'km', ' Unit_Kobs ', ' Commentary[pH] ', ' Organism '}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Golden-Benchmark/Golden Benchmark for Enzyme Kinetics_converted.csv (at revision 47192f5bab5578aeb305f148600563298a34535e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
ID_gold: int64
pubmed_id: int64
Enzyme: string
Organism: string
Substrate: string
km(mM): string
kcat(s^-1): string
km_kcat(mM^-1s^-1): string
Commentary[Temp]: string
Commentary[pH]: string
Commentary[Mutant]: string
Commentary[Cosubstrate]: string
Reference[Table/Text]: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1886
to
{' Ribozyme ': Value(dtype='string', id=None), ' Organism ': Value(dtype='string', id=None), ' Variable_reactant ': Value(dtype='string', id=None), 'Kobs': Value(dtype='string', id=None), ' Unit_Kobs ': Value(dtype='string', id=None), 'km': Value(dtype='string', id=None), ' Unit_Km ': Value(dtype='string', id=None), 'kcat': Value(dtype='string', id=None), ' Unit_Kcat ': Value(dtype='string', id=None), 'km_kcat': Value(dtype='string', id=None), ' Unit_Kcat/Km ': Value(dtype='string', id=None), 'Kcleav': Value(dtype='string', id=None), ' Unit_Kcleav ': Value(dtype='string', id=None), ' Commentary[Temp] ': Value(dtype='string', id=None), ' Commentary[pH] ': Value(dtype='string', id=None), ' Commentary[Mutant] ': Value(dtype='string', id=None), ' Commentary[Others] ': Value(dtype='string', id=None), 'pubmed_id': Value(dtype='string', id=None), 'Source': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1438, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1050, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 12 new columns ({'km(mM)', 'Commentary[Mutant]', 'Commentary[Cosubstrate]', 'Enzyme', 'km_kcat(mM^-1s^-1)', 'kcat(s^-1)', 'Substrate', 'Organism', 'Reference[Table/Text]', 'ID_gold', 'Commentary[pH]', 'Commentary[Temp]'}) and 18 missing columns ({' Commentary[Mutant] ', ' Unit_Kcat ', 'km_kcat', 'Kcleav', 'kcat', ' Variable_reactant ', ' Commentary[Temp] ', 'Source', ' Unit_Kcleav ', 'Kobs', ' Commentary[Others] ', ' Unit_Km ', ' Ribozyme ', ' Unit_Kcat/Km ', 'km', ' Unit_Kobs ', ' Commentary[pH] ', ' Organism '}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Golden-Benchmark/Golden Benchmark for Enzyme Kinetics_converted.csv (at revision 47192f5bab5578aeb305f148600563298a34535e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Ribozyme
string | Organism
string | Variable_reactant
string | Kobs
string | Unit_Kobs
string | km
string | Unit_Km
string | kcat
string | Unit_Kcat
string | km_kcat
string | Unit_Kcat/Km
string | Kcleav
string | Unit_Kcleav
string | Commentary[Temp]
string | Commentary[pH]
string | Commentary[Mutant]
string | Commentary[Others]
string | pubmed_id
string | Source
string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Hammerhead
|
NA
|
S13
|
NA
|
NA
|
38
|
nM
|
0.4
|
min^-1
|
10
|
min^-1 µM^-1
|
NA
|
NA
|
30°C
|
8
|
WT
|
10 mM MgCl2
|
1280808
|
Table
|
Hammerhead
|
NA
|
S13
|
NA
|
NA
|
59
|
nM
|
8.9
|
min^-1
|
150
|
min^-1 µM^-1
|
NA
|
NA
|
30°C
|
8
|
DNA-armed
|
10 mM MgCl2
|
1280808
|
Table
|
rz.GH
|
NA
|
rGAG
|
NA
|
NA
|
38
|
nM
|
0.019
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
WT
|
NA
|
1408757
|
Table
|
rz.GH
|
NA
|
dGAGrUCA
|
NA
|
NA
|
56
|
nM
|
0.087
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
WT
|
NA
|
1408757
|
Table
|
rz.DRD
|
NA
|
rGAG
|
NA
|
NA
|
64
|
nM
|
0.019
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
|
NA
|
1408757
|
Table
|
rz.DRD
|
NA
|
dGAGrUCA
|
NA
|
NA
|
196
|
nM
|
0.024
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
|
NA
|
1408757
|
Table
|
rz.DRD
|
NA
|
dGAGrUCA
|
NA
|
NA
|
48
|
nM
|
0.012
|
/min
|
NA
|
NA
|
NA
|
NA
|
50°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
|
NA
|
1408757
|
Table
|
rz.RLoop
|
NA
|
rGAG
|
NA
|
NA
|
64
|
nM
|
0.126
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
DNA in base-pairing sequences only
|
NA
|
1408757
|
Table
|
rz.RLoop
|
NA
|
dGAGrUCA
|
NA
|
NA
|
91
|
nM
|
0.108
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
DNA in base-pairing sequences only
|
NA
|
1408757
|
Table
|
rz.GH
|
NA
|
rGAG
|
NA
|
NA
|
NA
|
NA
|
0.02
|
/min
|
NA
|
NA
|
NA
|
NA
|
55°C
|
8.5
|
WT
|
NA
|
1408757
|
Text
|
RZ1
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.17
|
µM
|
0.3
|
mol/min
|
1.8
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
RZ2
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.27
|
µM
|
0.4
|
mol/min
|
1.5
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
RZ3
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.62
|
µM
|
1.1
|
mol/min
|
1.8
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
RZ4a
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.28
|
µM
|
0.3
|
mol/min
|
1.1
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
RZ4b
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.28
|
µM
|
0.5
|
mol/min
|
1.8
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
RZ5
|
NA
|
α-lac mRNA
|
NA
|
NA
|
0.41
|
µM
|
1.5
|
mol/min
|
3.7
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.88
|
µM
|
0.94
|
min^-1
|
1100 × 10^-3
|
µM^-1min^-1
|
NA
|
NA
|
55°C
|
8
|
WT
|
10 mM Mg^2+
|
1570323
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
4.2
|
µM
|
0.014
|
min^-1
|
3.3 × 10^-3
|
µM^-1min^-1
|
NA
|
NA
|
55°C
|
8
|
I^10
|
10 mM Mg^2+
|
1570323
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
6.9
|
µM
|
0.0057
|
min^-1
|
0.82 × 10^-3
|
µM^-1min^-1
|
NA
|
NA
|
55°C
|
8
|
dG^10
|
10 mM Mg^2+
|
1570323
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
13
|
µM
|
0.048
|
min^-1
|
3.5 × 10^-3
|
µM^-1min^-1
|
NA
|
NA
|
55°C
|
8
|
dG^13
|
10 mM Mg^2+
|
1570323
|
Table
|
Hammerhead 6
|
NA
|
NA
|
NA
|
NA
|
46
|
nM
|
1.5
|
min^-1
|
0.032
|
nM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
NA
|
10 mM MgCl2
|
1689847
|
Table
|
Hammerhead 8
|
NA
|
NA
|
NA
|
NA
|
41
|
nM
|
1
|
min^-1
|
0.024
|
nM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
NA
|
10 mM MgCl2
|
1689847
|
Table
|
Hammerhead 9
|
NA
|
NA
|
NA
|
NA
|
160
|
nM
|
1.5
|
min^-1
|
0.0093
|
nM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
NA
|
10 mM MgCl2
|
1689847
|
Table
|
Hammerhead 10
|
NA
|
NA
|
NA
|
NA
|
2300
|
nM
|
1
|
min^-1
|
0.00044
|
nM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
NA
|
10 mM MgCl2
|
1689847
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
154
|
nM
|
2.31
|
min^-1
|
15
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
WT
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
41
|
nM
|
0.006
|
min^-1
|
0.1
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dG10
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
308
|
nM
|
0.04
|
min^-1
|
0.2
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FG10
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
153
|
nM
|
0.8
|
min^-1
|
1.2
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-NG10
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
51
|
nM
|
0.005
|
min^-1
|
0.1
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dG13
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
227
|
nM
|
0.008
|
min^-1
|
0.04
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FG13
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
190
|
nM
|
0.16
|
min^-1
|
0.8
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-NG13
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
158
|
nM
|
3.29
|
min^-1
|
20.8
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dG19
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
176
|
nM
|
2.8
|
min^-1
|
15.9
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FG19
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
95
|
nM
|
1.21
|
min^-1
|
12.7
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-NG19
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
87
|
nM
|
1.3
|
min^-1
|
14.9
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dG24
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
116
|
nM
|
2.8
|
min^-1
|
24
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FG24
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
66
|
nM
|
0.83
|
min^-1
|
12.6
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-NG24
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
242
|
nM
|
4.78
|
min^-1
|
19.8
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dG27
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
210
|
nM
|
0.3
|
min^-1
|
1.4
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FG27
|
10 mM MgCl2
|
1736306
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
136
|
nM
|
0.92
|
min^-1
|
6.8
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-NG27
|
10 mM MgCl2
|
1736306
|
Table
|
NS83
|
Tobacco ringspot virus satellite RNA
|
YOKS501
|
NA
|
NA
|
0.025
|
µM
|
0.033
|
min^-1
|
1.32
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
7.6
|
NA
|
12 mM MgCl2, 2 mM spermidine
|
1762907
|
Table
|
NS80
|
Tobacco ringspot virus satellite RNA
|
YOKS403
|
NA
|
NA
|
0.023
|
µM
|
0.008
|
min^-1
|
0.33
|
µM^-1min^-1
|
NA
|
NA
|
37°C
|
7.6
|
NA
|
12 mM MgCl2, 2 mM spermidine
|
1762907
|
Table
|
(-)sTRSV
|
Tobacco ringspot virus satellite RNA
|
NA
|
NA
|
NA
|
0.03
|
µM
|
2.1
|
min^-1
|
70
|
µM^-1min^-1
|
NA
|
NA
|
NA
|
NA
|
WT
|
NA
|
1762907
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.62
|
µM
|
0.5
|
min^-1
|
0.81
|
µM^-1min^-1
|
NA
|
NA
|
55°C
|
NA
|
NA
|
NA
|
1762907
|
Multisource
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
220
|
nM
|
41
|
min^-1
|
186
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E_unmodified
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
217
|
nM
|
2.8
|
min^-1
|
13
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E_unmodified
|
Mg^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
276
|
nM
|
0.2
|
min^-1
|
1
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_total
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
107
|
nM
|
0.7
|
min^-1
|
7
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_22,28-30
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
187
|
nM
|
10
|
min^-1
|
53
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_11,14
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
269
|
nM
|
38
|
min^-1
|
140
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_14
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
321
|
nM
|
4
|
min^-1
|
12
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_14
|
Mg^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
243
|
nM
|
22
|
min^-1
|
90
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_28
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
187
|
nM
|
16
|
min^-1
|
86
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_29
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
91
|
nM
|
4
|
min^-1
|
44
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-FA_30
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
157
|
nM
|
0.6
|
min^-1
|
4
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_total
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
133
|
nM
|
8
|
min^-1
|
57
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_11,14
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
264
|
nM
|
21
|
min^-1
|
79
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_14
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
168
|
nM
|
14
|
min^-1
|
86
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_28
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
179
|
nM
|
20
|
min^-1
|
114
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_29
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
58
|
nM
|
5
|
min^-1
|
89
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E-dA_30
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
178
|
nM
|
22
|
min^-1
|
120
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E2_unmodified
|
Mn^2+
|
1911762
|
Table
|
Hammerhead Ribozyme
|
NA
|
NA
|
NA
|
NA
|
184
|
nM
|
25
|
min^-1
|
136
|
µM^-1·min^-1
|
NA
|
NA
|
25°C
|
7.5
|
E2-FA_20-22
|
Mn^2+
|
1911762
|
Table
|
Hammerhead
|
Lucerne transient streak virus
|
S
|
NA
|
NA
|
1.3
|
µM
|
0.5
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
50°C
|
8.5
|
WT
|
20 mM MgCl2, S concentration 0.05-0.6 µM
|
2646593
|
Table
|
Hammerhead
|
minus avocado sunbloth viroid
|
S
|
NA
|
NA
|
0.63
|
µM
|
0.5
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
50°C
|
8.5
|
WT
|
20 mM MgCl2
|
2646593
|
Table
|
Hammerhead
|
Lucerne transient streak virus
|
S
|
NA
|
NA
|
7.5
|
µM
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
50°C
|
8.5
|
WT
|
20 mM MgCl2, S concentration >0.6 µM
|
2646593
|
Text
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.63
|
min^-1
|
25
|
µM
|
0.8
|
min^-1
|
32x10^3
|
M^-1·min^-1
|
NA
|
NA
|
30°C
|
7.5
|
WT
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.14
|
min^-1
|
41
|
µM
|
0.27
|
min^-1
|
6.6x10^3
|
M^-1·min^-1
|
NA
|
NA
|
30°C
|
7.5
|
C109G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.0027
|
min^-1
|
120
|
µM
|
0.0072
|
min^-1
|
0.06x10^3
|
M^-1·min^-1
|
NA
|
NA
|
30°C
|
7.5
|
G212C
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.0071
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
30°C
|
7.5
|
C109G:G212C
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.047
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
30°C
|
7.5
|
G212A
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.12
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
30°C
|
7.5
|
C211G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.047
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
30°C
|
7.5
|
∆A210
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
|
Tetrahymena IVS
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.002
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
30°C
|
7.5
|
C109G:C211G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
|
Tetrahymena ribozyme
|
Tetrahymena thermophila
|
32P-labeled RNA
|
0.48
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
42°C
|
7.5
|
G212C
|
200 mM NaCl, 10 mM MgCl2
|
2684642
|
Text
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.8
|
µM
|
0.29
|
min^-1
|
0.36
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
WT
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.5
|
µM
|
0.04
|
min^-1
|
0.08
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4H^C_3
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
2.5
|
µM
|
0.046
|
min^-1
|
0.019
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4H^C_4
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.7
|
µM
|
0.096
|
min^-1
|
0.14
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4S^U_4
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
0.7
|
µM
|
0.2
|
min^-1
|
0.27
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4H^C_7
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
1
|
µM
|
0.19
|
min^-1
|
0.19
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4S^U_16.1
|
10 mM Mg^2+
|
7487885
|
Table
|
Hammerhead
|
NA
|
NA
|
NA
|
NA
|
2.3
|
µM
|
0.083
|
min^-1
|
0.037
|
min^-1 µM^-1
|
NA
|
NA
|
37°C
|
7.9
|
^4H^C_17
|
10 mM Mg^2+
|
7487885
|
Table
|
Hairpin
|
Tobacco ringspot virus
|
sTRSV-C8A
|
NA
|
NA
|
2500
|
nM
|
0.038
|
min^-1
|
2
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Tobacco ringspot virus
|
sTRSV
|
NA
|
NA
|
96
|
nM
|
0.36
|
min^-1
|
360
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Tobacco ringspot virus
|
sTRSV-C8G
|
NA
|
NA
|
540
|
nM
|
0.01
|
min^-1
|
2
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Tobacco ringspot virus
|
sTRSV-C8U
|
NA
|
NA
|
390
|
nM
|
0.045
|
min^-1
|
12
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Chicory yellow mottle virus
|
sCYMV1
|
NA
|
NA
|
400
|
nM
|
0.32
|
min^-1
|
80
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Chicory yellow mottle virus
|
sCYMV1-A8C
|
NA
|
NA
|
1500
|
nM
|
0.14
|
min^-1
|
9
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Chicory yellow mottle virus
|
sCYMV1-A8G
|
NA
|
NA
|
>6500
|
nM
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Chicory yellow mottle virus
|
sCYMV1-A8U
|
NA
|
NA
|
>10000
|
nM
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Chicory yellow mottle virus
|
sArMV
|
NA
|
NA
|
1400
|
nM
|
0.19
|
min^-1
|
14
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Arabis mosaic virus
|
sArMV-A1C
|
NA
|
NA
|
880
|
nM
|
0.26
|
min^-1
|
30
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Arabis mosaic virus
|
sArMV-A1C-A8C
|
NA
|
NA
|
5400
|
nM
|
0.22
|
min^-1
|
4
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Arabis mosaic virus
|
sArMV-A1C-A8G
|
NA
|
NA
|
1700
|
nM
|
0.26
|
min^-1
|
15
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Arabis mosaic virus
|
sArMV-A1C-A8U
|
NA
|
NA
|
3000
|
nM
|
0.4
|
min^-1
|
13
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
Hairpin
|
Arabis mosaic virus
|
sArMV
|
NA
|
NA
|
2600
|
nM
|
0.29
|
min^-1
|
11
|
10^4 M^-1 min^-1
|
NA
|
NA
|
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
|
R32
|
NA
|
all-RNA substrat
|
0.26
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7
|
WT
|
25 mM CoCl2
|
7506830
|
Table
|
DRD32
|
NA
|
all-RNA substrat
|
0.53
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7
|
Chimeric DNA/RNA
|
25 mM CoCl2
|
7506830
|
Table
|
R32
|
NA
|
all-RNA substrat
|
0.58
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7
|
WT
|
25 mM MgCl2
|
7506830
|
Table
|
DRD32
|
NA
|
all-RNA substrat
|
1.5
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7
|
Chimeric DNA/RNA
|
25 mM MgCl2
|
7506830
|
Table
|
R32
|
NA
|
all-RNA substrat
|
0.61
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
7
|
WT
|
25 mM MgSO4
|
7506830
|
Table
|
End of preview.