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b/29E0T4oBgHgl3EQfeAAf/content/tmp_files/2301.02383v1.pdf.txt @@ -0,0 +1,1603 @@ +DEEP BIOLOGICAL PATHWAY INFORMED PATHOLOGY- +GENOMIC MULTIMODAL SURVIVAL PREDICTION +Lin Qiu1, Aminollah Khormali2, Kai Liu1 +1 Division of Research and Early Development, Genentech +{qiul13, liuk3}@gene.com +2 Department of Electrical and Computer Engineering, University of Central Florida +aminollah.khormali@gmail.com +ABSTRACT +The integration of multi-modal data, such as pathological images and genomic data, +is essential for understanding cancer heterogeneity and complexity for personalized +treatments, as well as for enhancing survival predictions. Despite the progress made +in integrating pathology and genomic data, most existing methods cannot mine the +complex inter-modality relations thoroughly. Additionally, identifying explainable +features from these models that govern preclinical discovery and clinical prediction +is crucial for cancer diagnosis, prognosis, and therapeutic response studies. We +propose PONET- a novel biological pathway informed pathology-genomic deep +model that integrates pathological images and genomic data not only to improve +survival prediction but also to identify genes and pathways that cause different +survival rates in patients. Empirical results on six of The Cancer Genome Atlas +(TCGA) datasets show that our proposed method achieves superior predictive +performance and reveals meaningful biological interpretations. The proposed +method establishes insight into how to train biologically informed deep networks on +multimodal biomedical data which will have general applicability for understanding +diseases and predicting response and resistance to treatment. +1 +INTRODUCTION +Manual examination of hematoxylin and eosin (H&E)-stained slides of tumor tissue by pathologists +is currently the state-of-the-art for cancer diagnosis (Chan, 2014). The recent advancements in deep +learning for digital pathology have enabled the use of whole-slide images (WSIs) for computational +image analysis tasks, such as cellular segmentation (Pan et al., 2017; Hou et al., 2020), tissue +classification and characterization (Hou et al., 2016; Hekler et al., 2019; Iizuka et al., 2020). While +H&E slides are important and sufficient to establish a profound diagnosis, genomics data can provide +a deep molecular characterization of the tumor, potentially offering the chance for prognostic and +predictive biomarker discovery. +Cancer prognosis via survival outcome prediction is a standard method used for biomarker discovery, +stratification of patients into distinct treatment groups, and therapeutic response prediction (Cheng +et al., 2017; Ning et al., 2020). WSIs exhibit enormous heterogeneity and most approaches adopt a +two-stage multiple instance learning-based (MIL) approach for the representation learning of WSIs. +Firstly, instance-level feature representations are extracted from image patches in the WSI, and then +global aggregation schemes are applied to the bag of instances to obtain a WSI-level representation +for subsequent modeling purpose (Hou et al., 2016; Courtiol et al., 2019; Wulczyn et al., 2020; Lu +et al., 2021). Therefore, multimodal survival prediction faces an additional challenge due to the +large data heterogeneity gap between WSIs and genomics, and many existing approaches use simple +multimodal fusion mechanisms for feature integration, which prevents mining important multimodal +interactions (Mobadersany et al., 2018; Chen et al., 2022b;a). +The incorporation of biological pathway databases in a model takes advantage of leveraging prior +biological knowledge so that potential prognostic factors of well-known biological functionality can +be identified (Hao et al., 2018). Moreover, encoding biological pathway information into the neural +1 +arXiv:2301.02383v1 [q-bio.QM] 6 Jan 2023 + +Figure 1: Overview of PONET model. +networks achieved superior predictive performance compared with established models (Elmarakeby +et al., 2021). +Based on the current challenges in multimodal fusion of pathology and genomics and the potential +prognostic interpretation to link pathways and clinical outcomes in pathway-based analysis, we +propose a novel biological pathway-informed pathology-genomic deep model, PONET, that uses H&E +WSIs and genomic profile features for survival prediction. The proposed method contains four major +contributions: 1) PONET formulates a biological pathway-informed deep hierarchical multimodal +integration framework for pathological images and genomic data; 2) PONET captures diverse and +comprehensive modality-specific and cross-modality relations among different data sources based +on the factorized bilinear model and graph fusion network; 3) PONET reveals meaningful model +interpretations on both genes and pathways for potential biomarker and therapeutic target discovery; +PONET also shows spatial visualization of the top genes/pathways which has enormous potential +for novel and prognostic morphological determinants; 4) We evaluate PONET on six public TCGA +datasets which showed superior survival prediction comparing to state-of-the-art methods. Fig. 1 +shows our model framework. +2 +RELATED WORK +Multimodal Fusion. Earlier works on multimodal fusion focus on early fusion and late fusion. Early +fusion approaches fuse features by simple concatenation which cannot fully explore intra-modality +dynamics (Wöllmer et al., 2013; Poria et al., 2016; Zadeh et al., 2016). In contrast, late fusion +fuses different modalities by weighted averaging which fails to model cross-modal interactions +(Nojavanasghari et al., 2016; Kampman et al., 2018). The exploitation of relations within each +modality has been successfully introduced in cancer prognosis via bilinear model (Wang et al., 2021b) +and graph-based model (Subramanian et al., 2021). Adversarial Representation Graph Fusion (ARGF) +(Mai et al., 2020) interprets multimodal fusion as a hierarchical interaction learning procedure where +firstly bimodal interactions are generated based on unimodal dynamics, and then trimodal dynamics +are generated based on bimodal and unimodal dynamics. We propose a new hierarchical fusion +framework with modality-specific and cross-modality attentional factorized bilinear modules to +mine the comprehensive modality interactions. Our proposed hierarchical fusion framework is +different from ARGF in the following ways: 1) We take the sum of the weighted modality-specific +representation as the unimodal representation instead of calculating the weighted average of the +modality-specific representation in ARGF; 2) For higher level’s fusion, ARGF takes the original +embeddings of each modality as input while we use the weighted modality-specific representations; +3) We argue that ARGF takes redundant information during their trimodal dynamics. +Multimodal Survival Analysis. There have been exciting attempts on multimodal fusion of pathol- +ogy and genomic data for cancer survival prediction (Mobadersany et al., 2018; Cheerla & Gevaert, +2019; Wang et al., 2020). However, these multimodal fusion based methods fail to model the interac- +tion between each subset of multiple modalities explicitly. Kronecker product considers pairwise +interactions of two input feature vectors by producing a high-dimensional feature of quadratic ex- +pansion (Zadeh et al., 2017), and showed its superiority in cancer survival prediction (Wang et al., +2021b; Chen et al., 2022b;a). Despite promising results, using Kronecker product in multimodal +2 + +Unimodal + Gene layer Pathway layer Hidden layer +MFB +>C +Atten +um +hm +hm +hm +↑ +Bimodal +himz +Gene +hg +Gene +MFB +α +Multimodal +Atten +zuuy +Wm1m2 +Representation +hm1m2 +r +hm +Cox +Pathway +Pathology +Trimodal +↓ +hp +hmi +fe +MFB +Atten +Wm1m2m3 + hm1m2m3 +CNV + MUT +hc +Spatial Pathway +Data embedding +Hierarchical multimodal fusion +Interpretationfusion may introduce a large number of parameters that may lead to high computational cost and risk +of overfitting (Kim et al., 2017; Liu et al., 2021), thus limiting its applicability and improvement in +performance. To overcome this drawback, hierarchical factorized bilinear fusion for cancer survival +prediction (HFBSurv) (Li et al., 2022) uses factorized bilinear model to fuse genomic and image +features, dramatically reducing computational complexity. PONET differs from HFBSurv in two +ways: 1) PONET’s multimodal framework has three levels of hierarchical fusion module includ- +ing unimodal, bimodal, and trimodal fusion while HFBSurv only considers within-modality and +cross-modality fusion which we argue it is not adequate for mining the comprehensive interactions; +2) PONET leverages biological pathway informed network for better prediction and meaningful +interpretation purposes. +Pathway-associated Sparse Neural Network. The pathway-based analysis is an approach that a +number of studies have investigated to improve both predictive performance and biological inter- +pretability (Jin et al., 2014; Cirillo et al., 2017; Hao et al., 2018; Elmarakeby et al., 2021). Moreover, +pathway-based approaches have shown more reproducible analysis results than gene expression data +analysis alone (Li et al., 2015; Mallavarapu et al., 2017). These pathway-based deep neural networks +can only model genomic data which severely inhibits their applicability in current biomedical re- +search. Additionally, the existing pathway-associated sparse neural network structures are limited +for disease mechanism investigation: there is only one pathway layer in PASNet (Hao et al., 2018) +which contains limited biological prior information to deep dive into the hierarchical pathway and +biological process relationships; P-NET (Elmarakeby et al., 2021) calculates the final prediction by +taking the average of all the gene and pathway layers’ outputs, and this will bias the learning process +because it will put more weights for some layers’ outputs while underestimating the others. +3 +METHODOLOGY +3.1 +PROBLEM FORMULATION AND NOTATIONS +The model architecture of PONET is presented in Fig. 1, where three modalities are included as input: +gene expression g ∈ Rdg, pathological image p ∈ Rdp, and copy number (CNV) + mutation (MUT) +CNV + MUT ∈ Rdc, with dp being the dimensionality of p and so on. We define a hierarchical +factorized bilinear fusion model for PONET. We build a sparse biological pathway-informed embed- +ding network for gene expression. A fully connected (FC) embedding layer for both preprocessed +pathological image feature (fp) and the copy number + mutation (fc) to map feature into similar +embedding space for alleviating the statistical property differences between modalities, the three +network architecture details are in Appendix C.1. We label the three modality embeddings as hm, +m ∈ {g, p, c}, the superscript/subscript u, b, and t represents unimodal fusion, biomodal fusion and +trimodal fusion. After that, the embeddings of each modality are first used as input for unimodal fusion +to generate the modality-specific representation hu +m = ωmˆhm, ωm represent the modality-specific im- +portance, the feature vector of the unimodal fusion is the sum of all modality-specific representations +hu = � +m hu +m. In the bimodal fusion, modality-specific representations from the output of unimodal +fusion are fused to yield cross-modality representations hb +m1m2 = ωm1m2ˆhm1m2, m1, m2 ∈ {p, c, g} +and m1 ̸= m2, ωm1m2 represents the corresponding cross-modality importance. Similarly, the feature +vector of bimodal fusion is calculated as hb = � +m1,m2 hb +m1m2. We propose to build a trimodal +fusion to take each cross-modality representation from the output of bimodal fusion to mine the +interactions. Similarly to the bimodal fusion architecture, the trimodal fusion feature vector will +be ht = � +m1,m2,m3 ωm1m2m3ˆhm1m2m3, m1, m2, m3 ∈ {p, c, g} and m1 ̸= m2 ̸= m3, ωm1m2m3 +represents the corresponding trimodal importance. Finally, PONET concatenates hu, hb, ht to obtain +the final comprehensive multimodal representation and pass it to the Cox proportional hazards model +(Cox, 1972; Cheerla & Gevaert, 2019) for survival prediction. In the following sections we will +describe our hierarchical factorized bilinear fusion framework, l, o, s represents the dimensionality +of hm, zm, ˆhm1m2. +3.2 +SPARSE NETWORK +We design the sparse gene-pathway network consisting of one gene layer followed by three pathway +layers. A patient sample of e gene expressions is formed as a column vector, which is denoted by +X = [x1, x2, ..., xe], each node represents one gene. The gene layer is restricted to have connections +3 + +73,703 x 50,706 px +224 x 224 px, mpp: 0.5 +Whole Slide Image +WSI patching +Image Augmentation +𝑔!!(#) +𝑞!!(#) +𝑔!"(#) +𝑓!!(#) +𝑓!"(#) +𝑦" +'𝑦# +𝑧" +̂𝑧# +𝑝" +𝐿(𝑝, 𝑧) +Visual representation learning using SSL ViT +Student Network +Teacher Network +Patch features +𝑣 +𝑢 +Figure 2: Overall framework of the visual representation extraction using pre-trained self-supervised +vision transformer. +reflecting the gene-pathway relationships curated by the Reactome pathway dataset (Fabregat et al., +2020). The connections are encoded by a binary matrix M ∈ Ra×e, where a is the number of +pathways and e is the number of genes, an element of M, mij, is set to one if gene j belongs to +pathway i. The connections that do not exist in the Reactome pathway dataset will be zero-out. For +the following pathway-pathway layers, a similar scheme is applied to control the connection between +consecutive layers to reflect the parent-child hierarchical relationships that exist in the Reactome +dataset. The output of each layer is calculated as +y = f[(M ∗ W)T X + ϵ] +(1) +where f is the activation function, M represents the binary matrix, W is the weights matrix, X is the +input matrix, ϵ is the bias vector, and ∗ is the Hadamard product. We use tanh for the activation of +each node. We allow the information flow from the biological prior informed network starting from +the first gene layer to the last pathway layer, and we label the last layer output embeddings of the +sparse network for gene expression as hg. +3.3 +UNIMODAL FUSION +Bilinear models (Tenenbaum & Freeman, 2000) provide richer representations than linear models. +Given two feature vectors in different modalities, e.g., the visual features x ∈ Rm×1 for an image and +the genomic features y ∈ Rn×1 for a genomic profile, the bilinear model uses a quadratic expansion +of linear transformation considering every pair of features: +zi = xT Wiy +(2) +where Wi ∈ Rm×n is a projection matrix, zi ∈ R is the output of the bilinear model. Bilinear +models introduce a large number of parameters which potentially lead to high computational cost +and overfitting risk. To address these issues, Yu et al. (2017) develop the Multi-modal Factorized +Bilinear pooling (MFB) method, which enjoys the dual benefits of compact output features and robust +expressive capacity. +Inspired by the MFB (Yu et al., 2017) and its application in pathology and genomic multimodal +learning (Li et al., 2022), we propose unimodal fusion to capture modality-specific representations +and quantify their importance. The unimodal fusion takes the embedding of each modality hm as +input and factorizes the projection matrix Wi in Eq. (2) as two low-rank matrices: +zi += +hT +mWihm = +k� +d=1 +hT +mum,dvT +m,dhm += +1T (U T +m,ihm ◦ V T +m,ihm), m ∈ {p, c, g} +(3) +we get the output feature zm: +zm = SumPooling +� +˜U T +mhm◦ ˜V T +mhm, k +� +, m ∈ {p, c, g} +(4) +where k is the latent dimensionality of the factorized matrices. SumPooling (x, k) function performs +sum pooling over x by using a 1-D non-overlapped window with the size k, ˜Um ∈ Rl×ko and +˜Vm ∈ Rl×ko are 2-D matrices reshaped from Um and Vm, Um =[Um,1, . . . , Um,h] ∈ Rl×k×o and +Vm = [Vm,1, . . . , Vm,h] ∈ Rl×k×o. Each modality-specific representation ˆhm ∈ Rl+o is obtained +as: +ˆhm = hm©zm, m ∈ {p, c, g} +(5) +4 + +where © denotes vector concatenation. We also introduce a modality attention network Atten ∈ +Rl+o → R1 to determine the weight for each modality-specific representation to quantify its impor- +tance: +ωm = Atten(ˆhm; ΘAtten), m ∈ {p, c, g} +(6) +where ωm is the weight of modality m. In practice, Atten consists of a sigmoid activated dense layer +parameterized by ΘAtten. Therefore, the output of each modality in unimodal fusion, hu +m, is denoted +as ωmˆhm ∈ Rl+o, m ∈ {p, c, g}. Accordingly, the output of unimodal fusion, hu, is the sum of each +weighted modality-specific representation ωmˆhm, m ∈ {p, c, g} which is different from ARGF (Mai +et al., 2020) that used the weighted average of different modalities as the unimodal fusion output. +3.4 +BIMODAL AND TRIMODAL FUSION +Bimodal fusion aims to fuse diverse information of different modalities and quantify different +importance for them. After receiving the modality-specific representations hu +m from the unimodal +fusion, we can generate the cross-modality representation ˆhm1m2 ∈ Rs similar to Eq. (4) : +ˆhm1,m2 = Sum Pooling +� +˜U T +m1hu +m1◦ ˜V T +m2hu +m2, k +� +, +m1, m2 ∈ {p, c, g}, m1 ̸= m2 +(7) +where +˜U T +m1 ∈ R(l+o)×ks and ˜V T +m2 ∈ R(l+o)×ks are 2-D matrices reshaped from Um1 and Vm2 +and Um1 = [Um1,1, . . . , Um1,s] ∈ R(l+o)×k×s and Vm2 = [Vm2,1, . . . , Vm2,s] ∈ R(l+o)×k×s. We +leverage a bimodal attention network (Mai et al., 2020) to identify the importance of the cross- +modality representation. The similarity Sm1m2 ∈ R1 of hu +m1 and hu +m2 is first estimated as follows: +Sm1,m2 = +l+o +� +i=1 +� +eωm1 hu +m1,i +�l+o +j=1 eωm1hu +m1,j +� � +eωm2hu +m2,i +�l+o +j=1 eωm2hu +m2,j +� +(8) +where the computed similarity is in the range of 0 to 1. Then, the cross-modality importance ωm1m2 +is obtained by: +ωm1m2 = +eˆωmimj +� +mi̸=mj eˆωmimj , ˆωm1m2 = ωm1 + ωm2 +Sm1m2 + S0 +(9) +where S0 represents a pre-defined term controlling the relative contribution of similarity and modality- +specific importance, and here is set to 0.5. Therefore, the output of bimodal fusion, hb, is the sum of +each weighted cross-modality representation ωm1m2ˆhm1m2, m1, m2 ∈ {p, c, g} and m1 ̸= m2. +In trimodal fusion, each bimodal fusion output is fused with the unimodal fusion output that does +not contribute to the formation of the bimodal fusion. The output for each corresponding trimodal +representation is ˆhm1m2m3. In addition, trimodal attention was applied to identify the importance of +each trimodal representation, ωm1m2m3. The output of the trimodal fusion, ht, is the sum of each +weighted trimodal representation ωm1m2m3ˆhm1m2m3, m1, m2, m3 ∈ {p, c, g} and m1 ̸= m2 ̸= m3. +3.5 +SURVIVAL LOSS FUNCTION +We train the model through the Cox partial likelihood loss (Cheerla & Gevaert, 2019) with l1 +regularization for survival prediction, which is defined as: +ℓ(Θ) = − +� +i:Ei=1 +� +�ˆhΘ (xi) − log +� +j:Ti>Tj +exp +� +ˆhΘ (xj) +� +� +� + λ (∥Θ∥1) +(10) +where the values Ei, Ti and xi for each patient represent the survival status, the survival time, and the +feature, respectively. Ei = 1 means event while Ei = 0 represents censor. ˆhΘ is the neural network +model trained for predicting the risk of survival, Θ is the neural network model parameters, and λ is +a regularization hyperparameter to avoid overfitting. +5 + +4 +EXPERIMENTS +4.1 +EXPERIMENTAL SETUP +Datasets. To validate our proposed method, we used six cancer datasets from The Cancer Genome +Atlas (TCGA), a public cancer data consortium that contains matched diagnostic WSIs and genomic +data with labeled survival times and censorship statuses. The genomic profile features (mutation +status, copy number variation, RNA-Seq expression) are preprocessed by Porpoise 1 (Chen et al., +2022b). For this study, we used the following cancer types: Bladder Urothelial Carcinoma (BLCA) +(n = 437), Kidney Renal Clear Cell Carcinoma (KIRC) (n = 350), Kidney Renal Papillary Cell +Carcinoma (KIRP) (n = 284), Lung Adenocarcinoma (LUAD) (n = 515), Lung Squamous Cell +Carcinoma (LUSC) (n = 484), Pancreatic adenocarcinoma (PAAD) (n = 180). We downloaded the +same diagnostic WSIs from the TCGA website 2 that were used in Porpoise study to match the +paired genomic features and survival times. The feature alignment table for all the cancer types +is in Appendix A. For each WSI, automated segmentation of tissue was performed. Following +segmentation, image patches of size 224 × 224 were extracted without overlap at the 20 X equivalent +pyramid level from all tissue regions identified while excluding the white background and selecting +only patches with at least 50% tissue regions. Subsequently, a visual representation of those patches +is extracted with a vision transformer (Wang et al., 2021a) pre-trained on the TCGA dataset through +a self-supervised constructive learning approach, such that each patch is represented as a 1 × 2048 +vector. Fig. 2 shows the framework for the visual representation extraction by vision transformer +(VIT). Survival outcome information is available at the patient level, we aggregated the patch-level +feature into slide level feature representations based on an attention-based method (Lu et al., 2021; +Ilse et al., 2018). +Baselines. Using the same 5-fold cross-validation splits for evaluating PONET, we implemented and +evaluated six state-of-the-art methods for survival outcome prediction. Additionally, we included +three variations of PONET: a) PONET-O represents only genomic data, and pathway architecture +for the gene expression are included in the model; b) PONET-OH represents only genomic and +pathological image data but without pathway architecture in the model; c) PONET is our full model. +For all methods, we use the same VIT feature extraction pipeline for WSIs, as well as identical +training hyperparameters and loss functions for supervision. Training details and the parameters +tuning can be found in Appendix C.2. +CoxPH (Cox, 1972) represents the standard Cox proportional hazard models. +DeepSurv (Katzman et al., 2018) is the deep neural network version of the CoxPH model. +Pathomic Fusion (Chen et al., 2022a) as a pioneered deep learning-based framework for predicting +survival outcomes by fusing pathology and genomic multimodal data, in which Kronecker product is +taken to model pairwise feature interactions across modalities. +GPDBN (Wang et al., 2021b) adopts Kronecker product to model inter-modality and intra-modality +relations between pathology and genomic data for cancer prognosis prediction. +HFBSurv (Li et al., 2022) extended GPDBN using the factorized bilinear model to fuse genomic +and pathology features in a within-modality and cross-modalities hierarchical fusion. +Porpoise (Chen et al., 2022b) applied the discrete survival model and Kronecker product to fuse +pathology and genomic data for survival prediction (Zadeh & Schmid, 2020). +Evaluation. For each cancer dataset, we used the cross-validated concordance index (C-Index) +(Appendix B.1) (Harrell et al., 1982) to measure the predictive performance of correctly ranking the +predicted patient risk scores with respect to overall survival. +4.2 +RESULTS +Comparison with Baselines. In combing pathology image, genomics, and pathway network via +PONET, our approach outperforms CoxPH models, unimodal networks, and previous deep learning- +based approaches on pathology-genomic-based survival outcome prediction (Table 1). The results +show that deep learning-based approaches generally perform better than the CoxPH model. PONET +achieves superior C-index values in all six cancer types. All versions of PONET outperform Pathomic +1https://github.com/mahmoodlab/PORPOISE +2https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga +6 + +Table 1: C-Index (mean ± standard deviation) of PONET and ablation experiments in TCGA survival +prediction. The top two performers are highlighted in bold. +Model +TCGA-BLCA +TCGA-KIRC +TCGA-KIRP +TCGA-LUAD +TCGA-LUSC +TCGA-PAAD +CoxPH (Age + Gender) (Cox, 1972) +0.525 ± 0.130 +0.550 ± 0.070 +0.544 ± 0.050 +0.531 ± 0.082 +0.532 ± 0.094 +0.539 ± 0.092 +DeepSurv (Kampman et al., 2018) +0.580 ± 0.062 +0.620 ± 0.043 +0.560± 0.063 +0.534 ±0.077 +0.541 ± 0.066 +0.544 ± 0.076 +GPDBN (Wang et al., 2021b) +0.612 ± 0.042 +0.647 ± 0.073 +0.669 ± 0.109 +0.565 ± 0.057 +0.545 ± 0.063 +0.571 ± 0.060 +HFBSurv (Li et al., 2022) +0.622 ± 0.043 +0.667 ± 0.053 +0.769 ± 0.109 +0.581 ± 0.017 +0.548 ± 0.049 +0.591 ± 0.052 +Pathomic Fusion (Chen et al., 2022a) +0.586 ± 0.062 +0.598 ± 0.060 +0.577 ± 0.032 +0.543 ± 0.065 +0.523 ±0.045 +0.545 ± 0.064 +Porpoise (Chen et al., 2022b) +0.617 ± 0.048 +0.711 ± 0.051 +0.811 ± 0.089 +0.586 ±0.056 +0.527 ± 0.043 +0.591 ± 0.064 +PONET-O (ours) +0.596 ± 0.056 +0.664 ± 0.056 +0.761 ± 0.093 +0.623 ±0.062 +0.538 ± 0.037 +0.598 ± 0.027 +PONET-OH (ours) +0.625 ± 0.063 +0.695 ± 0.043 +0.776 ± 0.123 +0.618 ± 0.049 +0.553 ± 0.049 +0.591 ± 0.050 +PONET (ours) +0.643 ± 0.037 +0.726 ± 0.056 +0.829 ± 0.054 +0.646 ±0.047 +0.567 ± 0.066 +0.639 ± 0.080 +Table 2: Evaluation of PONET on different fusion methods and pathway designs by C-index (mean +± standard deviation). The best performer is highlighted in bold. +Methods +TCGA-BLCA +TCGA-KIRP +TCGA-LUAD +TCGA-LUSC +TCGA-PAAD +Single fusion +Simple concatenation +0.585 ± 0.045 +0.652 ± 0.049 +0.554 ± 0.065 +0.525 ± 0.066 +0.568 ± 0.075 +Element-wise addition +0.592 ± 0.047 +0.655 ± 0.055 +0.587 ± 0.065 +0.522 ± 0.046 +0.588 ± 0.055 +Tensor fusion (Zadeh et al., 2017) +0.605 ± 0.046 +0.775 ± 0.053 +0.595 ± 0.060 +0.545 ± 0.045 +0.592 ± 0.061 +Hierarchical fusion +Unimodal +0.596 ± 0.035 +0.783 ± 0.063 +0.611 ± 0.056 +0.553 ± 0.073 +0.595 ± 0.053 +Bimodal +0.602 ± 0.062 +0.789 ± 0.053 +0.601 ± 0.056 +0.552 ± 0.051 +0.598 ± 0.083 +ARGF (Mai et al., 2020) +0.597 ± 0.054 +0.792 ± 0.043 +0.614 ± 0.051 +0.556 ± 0.063 +0.602 ± 0.065 +Unimodal + Bimodal +0.614 ± 0.052 +0.803 ± 0.061 +0.631 ± 0.044 +0.578 ± 0.058 +0.615 ± 0.057 +Pathway design +PASNet (Hao et al., 2018) +0.606 ± 0.045 +0.793 ± 0.051 +0.621 ± 0.061 +0.551 ± 0.069 +0.625 ± 0.057 +P-NET (Elmarakeby et al., 2021) +0.622 ± 0.047 +0.802 ± 0.071 +0.625 ± 0.045 +0.562 ± 0.054 +0.627 ± 0.073 +PONET +0.643 ± 0.037 +0.829 ± 0.054 +0.641 ± 0.046 +0.567 ± 0.066 +0.639 ± 0.070 +Fusion by a big margin. Pathomic Fusion uses Kronecker product to fuse the two modalities, and +that’s also the reason why other advanced fusion methods, like GPDBN and HFBSurv, achieve better +performance. Also, we argue that Pathomic Fusion extracts the region of interest of pathology image +for feature extraction might limit the understanding of the tumor microenvironment of the whole slide. +HFBSurv shows better performance than GPDBN and Pathomic Fusion which is consistent with +their findings, and these results further demonstrate that the hierarchical factorized bilinear model +can better mine the rich complementary information among different modalities compared to the +Kronecker product. Porpoise performs similarly with PONET on TCGA-KIRC and TCGA-KIRP and +outperformed HFBSurv in these two studies, this probably is due to Porpoise partitioned the survival +time into different non-overlapping bins and parameterized it as a discrete survival model (Zadeh +& Schmid, 2020) which works better for these two cancer types. In other cases, Porpoise performs +similarly to HFBSurv. Note: the results of Porpoise are from their paper (Chen et al., 2022b). +Additionally, we can see that PONET consistently outperforms PONET-O and PONET-OH indi- +cating the effectiveness of the biological pathway-informed neural network and the contribution of +pathological image for the overall survival prediction. +Ablation Studies. To assess whether the impact of hierarchical factorized bilinear fusion strategy +is indeed effective, we compare PONET with four single-fusion methods: 1) Simple concatenation: +concatenate each modality embeddings; 2) Element-wise addition: element-wise addition from each +modality embeddings; 3) Tensor fusion (Zadeh et al., 2017): Kronecker product from each modality +embeddings. Table 2 shows the C-index values of different methods. We can see that PONET +achieves the best performance and shows remarkable improvement over single-fusion methods on +different cancer type datasets. For example, PONET outperforms the Simple concatenation by +8.4% (TCGA-BLCA), 27% (TCGA-KIRP), 15% (TCGA-LUAD), 8.0% (TCGA-LUSC), and 11.4% +(TCGA-PAAD), etc. +Furthermore, we adopted five different configurations of PONET to evaluate each hierarchical +component of the proposed method: 1) Unimodal: unimodal fusion output as the final feature +representation; 2) Bimodal: bimodal fusion output as the final feature representation; 3) Unimodal ++ Bimodal: hierarchical (include both unimodal and bimodal feature representation) fusion; 4) +ARGF: ARGF (Mai et al., 2020) fusion strategy; 5) PONET: our proposed hierarchical strategy by +incorporating unimodal, bimodal, and trimodal fusion output. As shown in Table 2, Unimodal + +Bimodal performs better than Unimodal and Bimodal which demonstrates that Unimodal + Bimodal +can capture the relations within each modality and across modalities. ARGF performs worse than +Unimodal + Bimodal and far worse than PONET across all the cancer types. PONET outperforms +7 + +Figure 3: Inspecting and interpreting PONET on TCGA-KIRP. a: Sankey diagram visualization +of inner layers of PONET shows the estimated relative importance of different nodes in each layer. +Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes +in each layer, H1 presents the gene layer, and H2-H4 represent pathway layers; b: Co-attention +visualization of top 4 ranked pathways in one case of TCGA-KIRP. +Unimodal + Bimodal in 4 out of 5 cancer types indicating that three layers of hierarchical fusion can +mine the comprehensive interactions among different modalities. +To evaluate our sparse gene-pathway network design, we compare PONET with PASNet (Hao et al., +2018) and P-NET (Elmarakeby et al., 2021) pathway architecture, PASNet performs the worst due to +the fact that it only has one pathway layer in the network, and thus limited prior information was used +to predict the outcome. PONET constantly outperforms P-NET across all the cancer types, which +demonstrates that averaging all the intermediate layers’ output for the final prediction cannot fully +capture the prior information flow among the hierarchical biological structures. +Model Interpretation. We discuss the model interpretation results for cancer type TCGA-KIRP +here and the results for other cancer types are included in the Appendix C.3. To understand the +interactions between different genes, pathways, and biological processes that contributed to the +predictive performance and to study the paths of impact from the input to the outcome, we visualized +the whole structure of PONET with the fully interpretable layers after training (Fig. 3 a). To evaluate +the relative importance of specific genes contributing to the model prediction, we inspected the genes +layer and used the Integrated Gradients attribution (Sundararajan et al., 2017) method to obtain +the total importance score of genes, and the modified ranking algorithm details are included in the +Appendix B.3. Highly ranked genes included KRAS, PSMB6, RAC1, and CTNNB1 which are known +kidney cancer drivers previously (Yang et al., 2017; Shan et al., 2017; Al-Obaidy et al., 2020; Guo +et al., 2022). GBN2, a member of the guanine nucleotide-binding proteins family, has been reported +that the decrease of its expression reduced tumor cell proliferation (Zhang et al., 2019). A recent study +identified a strong dependency on BCL2L1, which encodes the BCL-XL anti-apoptotic protein, in a +subset of kidney cancer cells (Grubb et al., 2022). This biological interpretability revealed established +and novel molecular features contributing to kidney cancer. In addition, PONET selected a hierarchy +of pathways relevant to the model prediction, including downregulation of TGF-β receptor signaling, +regulation of PTEN stability and activity, the NLRP1 inflammasome, and noncanonical activation of +NOTCH3 by PSEN1, PSMB6, and BCL2L1. TGF-β signaling is increasingly recognized as a key +driver in cancer, and in progressive cancer tissues TGF-β promotes tumor formation, and its increased +expression often correlates with cancer malignancy (Han et al., 2018). Noncanonical activation of +NOTCH3 was reported to limit tumor angiogenesis and plays a vital role in kidney disease (Lin et al., +2017). +8 + +a +H1 +H2 +H3 +H4 +KRAS +Downregulation of TGF-beta receptor signaling +TGF-beta receptor signaling activates SMADs +Neurodegenerative Diseases +PSMB6 +Regulation of PTEN stability and activity +NOTCH3 Activation and Transmission of Signal +Cellular Senescence +RAC1 +Calmodulin induced events +Semaphorin interactions +Signal amplification +CTNNB1 +The NLRP1 inflammasome +Downstream signaling events of B Cell Receptor +Signaling by FGFR +BCL2L1 +Noncanonical activation of NOTCH3 +M Phase +LeadingStrand Synthesis +GNB2 +Synthesis of PIPs in the nucleus +Biosynthesis of the N-glycan precursor +ER to Golgi Anterograde Transport +outcome +PSEN1 +Regulation of PTEN gene transcription +Biosynthesis of DHA-derived SPMs +Signaling by TGF-beta Receptor Complex in Cancer +MTMR4 +RPA3 +Viral mRNA Translation +Export of Viral Ribonucleoproteins from Nucleus +Interferon Signaling +HDAC3 +Complex I biogenesis +ZBP1(DAI) mediated induction of type I IFNs +Transportofvitaminsandnucleosides +residual +Formation of tubulin folding intermediates by CCT/TriC Amine Oxidase reactions +Transportofbilesalts,organicacids,andmetalions +residual +residual +residual +b +TCGA-Q2-A5QZ +Downregulation of TGF-beta +Regulation of PTEN +Survival Month: 14.06 +receptor signaling + stability and activity +Calmodulin induced events +The NLRP1 inflammasome +High Attn +Low AttnFigure 4: Kaplan-Meier analysis of patient stratification of low and high risk patients via four +variations of PONET on TCGA-KIRP. Low and high risks are defined by the median 50% percentile +of hazard predictions via each model prediction. Log-rank test was used to test for statistical +significance in survival distributions between low and high risk patients. +To further inspect the pathway spatial association with the WSI slide we adopted the co-attention +survival method MCAT (Chen et al., 2021) between WSIs and genomic features on the top +pathways of the second layer, visualized as a WSI-level attention heatmap for each pathway +genomic embedding in Fig. +3 b (algorithm details are included in the Appendix B.4). +We +used the gene list from the top 4 pathways as the genomic features and trained MCAT on the +TCGA-KIRP dataset for survival prediction. Overall, we observe that high attention in different +pathways showed different spatial pattern associations with the slide. This heatmap can reflect +genotype-phenotype relationships in cancer pathology. The high attention regions (red) of dif- +ferent pathways in the heatmap have positive associations with the predicted death risk while +the low attention regions (blue) have negative associations with the predicted risk. By further +checking the cell types in high attention patches we can gain insights of prognostic morpho- +logical determinants and have a better understanding of the complex tumor microenvironment. +Table 3: Comparison of model complexity +Methods +Number of Parameters +FLOPS +Pathomic Fusion +175M +168G +GPDBN +82M +91G +HFBSurv +0.3M +0.5G +PONET +2.8M +3.1G +Patient Stratification. +In visualizing +the Kaplan-Meier survival curves of pre- +dicted high risk and low risk patient +populations, we plot four variations of +PONET in Fig. 4. PONET-ARGF rep- +resents the model that we use the hier- +archical fusion strategy of ARGF in our +pathway-informed PONET model. From +the results, PONET enables easy sepa- +ration of patients into low and high risk +groups with remarkably better stratifica- +tion (P-Value = 6.60e-7) in comparison to the others. +Complexity Comparison. We compared PONET with Pathomic Fusion, GPDBN, and HFBSurv +since both Pathomic Fusion and GPDBN are based on Kronecker product to fuse different modalities +while GPDBN and HFBSurv modeled inter-modality and intra-modality relations which have similar +consideration to our method. As illustrated in Table 3, PONET has 2.8M (M = Million) trainable +parameters, which is approximately 1.6%, 3.4%, and 900% of the number of parameters of Pathomic +Fusion, GPDBN, and HFBSurv. To assess the time complexity of PONET and the competitive +methods, we calculate each method’s floating-point operations per second (FLOPS) in testing. The +results in Table 3 show that PONET needs 3.1G during testing, compared with 168G, 91G, and 0.5G +in Pathomic Fusion, GPDBN, and HFBSurv. The main reason for fewer trainable parameters and the +number of FLOPS lies in that PONET and HFBSurv perform multimodal fusion using the factorized +bilinear model, and can significantly reduce the computational complexity and meanwhile obtain +more favorable performance. PONET has one additional trimodal fusion which explains why it has +more trainable parameters than HFBSurv. +5 +CONCLUSION +In this study, we pioneer propose a novel biological pathway-informed hierarchical multimodal +fusion model that integrates pathology image and genomic profile data for cancer prognosis. In +comparison to previous works, PONET deeply mines the interaction from multimodal data by +conducting unimodal, bimodal and trimodal fusion step by step. Empirically, PONET demonstrates +9 + +PONET-O +PONET-OH +PONET-ARGF +PONET +1.0 - +1.0 +1.0 +P-Value =1.90e-3 +P-Value =7.49e-4 +P-Value =4.27e-5 + P-Value =6.60e-7 +0.9 +0.9 +0.9 +0.9 +0.8 +0.8 +0.8 +0.8 +0.7 +0.7 +Proportion s +0.7 +0.7 +0.6 +0.6 +0.6 +0.6 +0.5 +0.5 +0.5 +0.5 +Low risk +0.4 +Low risk +0.4 +Low risk +Low risk +High risk +0.4 +High risk +High risk +High risk +0.3 +0 +25 +50 +75 +100 +125 +0 +25 +50 +75 +100 +125 +0 +25 +50 +75 +100 +125 +0 +25 +50 +75 +100 +125 +Time (months)the effectiveness of the model architecture and the pathway-informed network for superior predictive +performance. 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Oncology Letters, 18(4):4237–4245, 2019. +13 + +Table 4: TCGA Data Feature Alignment Summary +WSI +CNV +MUT +RNA +WSI+CNV+MUT +WSI+MUT+RNA +ALL +Cancer Type +BLCA +454 +443 +452 +450 +441 +448 +437 +KIRC +517 +509 +357 +514 +352 +355 +350 +KIRP +294 +291 +286 +293 +284 +285 +284 +LUAD +528 +522 +523 +522 +519 +519 +515 +LUSC +505 +502 +489 +503 +486 +487 +484 +PAAD +208 +201 +187 +195 +187 +180 +180 +A +DATA +Table 3 in Appendix A shows the number of patients with matched different data modalities: WSI +(Whole slide image), CNV (Copy number), MUT (Mutation), RNA (RNA-Seq gene expression). For +each TCGA dataset and each patient we have preprocessed data dimensions dg ∈ R1×2000 (RNA), +dc ∈ R1×227 (CNV + MUT), and dp ∈ R1×32 (WSI) which will be used for our multimodal fusion. +B +METHODS +B.1 +C-INDEX +We use concordance-index (C-index) (Harrell et al., 1982) to measure the performance of survival +models. It evaluates the model by measuring the concordance of the ranking of predicted harzards +with the true survival time of patients. The range of the C-index is [0, 1], and larger values indicate +better performance with a random guess leading to a C-index of 0.5. +B.2 +WSI REPRESENTATION LEARNING +It has been shown that the WSI visual representations extracted by self-supervised learning methods +on histopathological images are more accurate and transferable than the supervised baseline models +on domain-irrelevant datasets such as ImageNet. In this work, a pre-trained Vision Transformer (ViT) +model (Wang et al., 2021a) that is trained on a large histopathological image dataset has been utilized +for tile feature extraction. The model is composed of two main neural networks that learn from each +other, i.e., student and teacher networks. Parameters of the teacher model θt are updated using the +student network with parameter θs using the update rule represented in Eq. (11). +θt ← τθt + (1 − τ)θs +(11) +Two different views of a given input H&E image x, uniformly selected from the training set I, are +generated using random augmentations, i.e., u, v. Then, student and teacher models generate two +different visual representations according to u and v as y1 = f θs (u) and ˆy2 = f θt (v), respectively. +Finally, the generated visual representations are transformed into latent space using linear projection as +p1 = gθs � +gθs (y1) +� +and ˆz2 = gθt (ˆy2) for student and teacher networks, respectively. Similarly, feed- +ing v and u to student and teacher networks leads to y2 = f θs (v) , ˆy1 = f θt (u) , p2 = gθs � +gθs (y2) +� +and ˆz1 = gθt ( ˆy1). Finally, the symmetric objective function Lloss is optimized through minimizing +the ℓ2 − norm distance between student and teacher as Eq. (12) +Lloss = 1 +2L (p1, ˆz2) + 1 +2L (p2, ˆz1) +(12) +where L(p, z) = − +p +∥p∥2 · +z +∥z∥2 and ∥ · ∥2 represents ℓ2 − norm. +14 + +B.3 +SPARSE NETWORK FEATURE INTERPRETATION +We use the Integrated Gradients attribution algorithm to rank the features in all layers. Inspired by +PNET (Elmarakeby et al., 2021), to reduce the bias introduced by over-annotation of certain nodes +(nodes that are members of too many pathways), we adjusted the Integrated Gradients scores using a +graph informed function f that considers the connectivity of each node. The importance score of +each node i, Cl +i is divided by the node degree dl +i if the node degree is larger than the mean of node +degrees plus 5σ where σ is the standard deviation of node degrees. +dl +i = fan − inl +i + fan − outl +i +adjusted Cl +i = f(x) = +� Cl +i +dl +i , +dl +i > µ + 5σ +Cl +i, +otherwise +B.4 +CO-ATTENTION BASED PATHWAY VISUALIZATION +After we got the ranking of top genes and pathways, we adopted the co-attention survival model +(MCAT) (Chen et al., 2021) to show the spatial visualization of genomic features. We trained MACT +on all our TCGA datasets, and MACT learns how WSI patches attend to genes when predicting +patient survival. We define each WSI patch representation and pathway genomic features as Hbag +and Gbag. The genomic features are the gene list values from the top pathways of each TCGA dataset. +The model uses Gbag ∈ RN×dg to guide the feature aggregation of Hbag ∈ RN×dp into a clustered +set of gene-guided visual concepts �Hbag ∈ RN×dp , dg and dp represents the dimension for the +pathway (number of genes involved in the pathway) and patch. Through the following mapping: +CoAttnG→H(G, H) = softmax +� +QK⊤ +� +dp +� += softmax +� +WqGH⊤W⊤ +s +� +dp +� +WvH → Acoattn WvH → �H +where Wq, Ws, Wv ∈ Rdp×dp are trainable weight matrices multiplied to the queries Gbag and +key-value pair (Hbag , Hbag ), and Acoattn ∈ RN×M is the co-attention matrix for computing the +weighted average of Hbag . Here, M represents the number of patches in one slide, and N represents +the number of pathways (We trained the top four pathways, so N = 4 in our study). +C +EXPERIMENTS +C.1 +NETWORK ARCHITECTURE +Sparse network for gene: The final gene expression embedding is hg ∈ R1×50. +Pathology network: The slide level image feature representation is passed through an image embed- +ding layer and encodes the embedding as hp ∈ R1×50. +CNV + MUT network: Similarly as the pathology network, the patient level CNV + MUT feature +representation is passed through an FC embedding layer and encodes the embedding as hc ∈ R1×50. +C.2 +EXPERIMENTAL DETAILS +PONET. The latent dimensionality of the factorized matrices k is a very important tuning parameter. +We tune k = [3, 5, 10, 20, 30, 50] based on the testing C-index value (Appendix Fig. 5) and the loss +of training and testing plot (Appendix Fig. 6) for each dataset. We choose k to maximize the C-index +value and also it should have stable convergence in both training and testing loss. For example, we +choose k = 10 in TCGA-KIRP for the optimized results. We can see that in Appendix Fig. 5 the +testing loss is quite volatile when k is less than 10. Similarly, we choose k = [20, 10, 20, 20, 10] for +TCGA-BLCA, TCGA-KIRC, TCGA-LUAD, TCGA-LUSC, and TCGA-PAAD, respectively. +15 + +Figure 5: C-Index value under K = 3, 5, 10, 20, 30, 50 for TCGA-KIRP. The mean value and standard +deviation for 5-fold cross-validation are plotted. +The learning rate and the regularization hyperparameter λ for the Cox partial likelihood loss are +also tunable parameters. The model is trained with Adam optimizer. For each training/testing pair, +we first empirically preset the learning rate to 1.2e-4 as a starting point for a grid search during +training, the optimal learning rate is determined through the 5-fold cross-validation on the training +set, C-index was used for the performance metric. After that, the model is trained on all the training +sets and evaluated on the testing set. We use 2e-3 through the experiments for λ. The batch size is +set to 16, and the epoch is 100. During the training process, we carefully observe the training and +testing loss for convergence (Figure 4 in Appendix C.2). The server used for experiments is NVIDIA +GeForce RTX 2080Ti GPU. +CoxPH. We only include the age and gender for the survival prediction. Using CoxPHFitter from +lifelines 3. +DeepSurv 4. We concatenate preprocessed pathological image features, gene expression, and copy +number + mutant data in a vector to train the DeepSurv model. L2 reg = 10.0, dropout = 0.4, hidden +layers sizes = [25, 25], learning rate = 1e-05, learning rate decay = 0.001, momentum = 0.9. +Pathomic Fusion 5. We use the pathomicSurv model which takes our preprocessed image feature, +gene expression, and copy number + mutation as model input. k = 20, Learning rate is 2e-3, weight +decay is 4e-4. The batch size is 16, and the epoch is 100. Drop out rate is 0.25. +GPDBN 6. The learning rate is 2e-3, the batch size is 16, the weight decay is 1e-6, the dropout rate is +0.3, and the epoch is 100. +HFBSurv 7. The learning rate is set to 1e-3, the batch size is 16, λ = 3e-3, weight decay is 1e-6, and +the epoch is 100. +3https://github.com/CamDavidsonPilon/lifelines +4https://github.com/czifan/DeepSurv.pytorch +5https://github.com/mahmoodlab/PathomicFusion +6https://github.com/isfj/GPDBN +7https://github.com/Liruiqing-ustc/HFBSurv +16 + +0.8 +0.6 +C-Index +0.4 +0.2 +0.0 +5 +10 +20 +30 +50 +3 +KFigure 6: Train and test loss for TCGA-KIRP under K = 3, 5, 10, 20, 50 for 5-fold cross-validation. +17 + +Fold 1 +Fold 2 +Fold 3 +Fold 4 +Fold 5 +Train +K=3 +Test +K=5 +K= 10 +K= 20 +1.06 +K=50 + 0.65 +0.60 +0.0 +0.50C.3 +ADDITIONAL RESULTS +Figure 7: Inspecting and interpreting PONET on TCGA-BLCA. Sankey diagram visualization of +the inner layers of PONET shows the estimated relative importance of different nodes in each layer. +Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes in +each layer. +Figure 8: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-BLCA. +18 + +Gene +Pathways +GNB1 +PI5P,PP2Aand IER3RegulatePI3K/AKTSignaling +Toll Like Receptor 10 (TLR10) Cascade +Cell-extracellular matrix interactions +PPP2R5E +SHC-related events triggered by IGF1R +Cell death signalling via NRAGE, NRIF and NADE +RNA Polymerase II Transcription Elongation +KRAS +MAP2K and MAPK activation +Interferon gamma signaling +rRNA processing in the mitochondrion +Calmodulin induced events +Mitotic Telophase/Cytokinesis +Regulation of Hypoxia-inducible Factor (HIF) by oxygen +PSMA7 +Activation of G protein gated Potassium channels +FBXW7 Mutants and NOTCH1 in Cancer +mRNA Splicing +KPNA2 +outcome +YWHAB +Activation of NF-kappaB in B cells +Golgi-to-ER retrograde transport +TCR signaling +GSK3B +Gap junction degradation +Signaling by FGFR1 in disease +Mitotic Spindle Checkpoint +HSP90AB1 +Phosphate bond hydrolysis by NUDT proteins +Biosynthesis of DPA-derived SPMs +ESR-mediated signaling +TBK1 +NEP/NS2 Interacts with the Cellular Export Machinery +TCF transactivating complex +Fatty acid metabolism +PIK3CA +p53-IndependentDNADamageResponse +Interleukin-17 signaling +Effects of PIP2 hydrolysis +residual +residual +residual +residualTCGA-4Z-AA7Y +PI5P, PP2A and IER3 +SHC-related events +PI3K/AKT Signaling +MAP2K and MAPK activation +Calmodulin induced events +Survival Month: 50 +triggered by IGF-1R +High Attn +TCGA-UY-A78N +Survival Month: 86.76 +Low AttnFigure 9: Inspecting and interpreting PONET on TCGA-KIRC. Sankey diagram visualization of +the inner layers of PONET shows the estimated relative importance of different nodes in each layer. +Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes in +each layer. +Figure 10: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-KIRC. +19 + +TCGA-A3-3313 +Downregulation of +MAP2K and MAPK activation +Activation of the +P53-Independent DNA +ERBB2:ERBB3 signaling +Survival Month: 24.15 +pre-replicative complex +damage response +High Attn +TCGA-A3-3320 +Survival Month: 49.54 +Low AttnGene +Pathways +TFDP2 +Glucagon-type ligand receptors +Class B/2 (Secretin family receptors) +GPCR ligand binding +MAPK3 +Downregulation of ERBB2:ERBB3 signaling +G1/STransition +G1/S DNA Damage Checkpoints +PTPN11 +MAP2K and MAPK activation +p53-lndependent G1/S DNA damage checkpoint +Mitotic G1-G1/S phases +ADCY5 +Activation of the pre-replicative complex +RAF/MAP kinase cascade +Defects in vitamin and cofactor metabolism +PSMC2 +p53-Independent DNADamage Response +CLEC7A (Dectin-1) signaling +MAPK1/MAPK3 signaling +MTRR +outcome +PLCB1 +Processing of DNA double-strand break ends +Downregulation of ERBB2 signaling +C-type lectin receptors (CLRs) +PSMD11 +CLEC7A (Dectin-1) induces NFAT activation +Defects in cobalamin (B12) metabolism +HIV Infection +PSMF1 +RHO GTPases Activate NADPH Oxidases +HDR or Single Strand Annealing +Signaling by ERBB2 +IL6ST +SHC-related events triggered by IGF1R +G2/M Transition +Fatty acid metabolism +Activation of NOXA and translocation to mitochondria +Activation of BH3-only proteins +Mitotic G2-G2/M phases +residual +residual +residual +residualFigure 11: Inspecting and interpreting PONET on TCGA-LUAD. Sankey diagram visualization +of the inner layers of PONET shows the estimated relative importance of different nodes in each +layer. Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes in +each layer. +Figure 12: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-LUAD. +20 + +Gene +Pathways +CCT3 +Processive synthesis on the lagging strand +Lagging Strand Synthesis +Class I MHC pathwiay +PSEN1 +HDR through Homologous Recombination (HRR) +Leading Strand Synthesis +Signaling by EGFR in Cancer +Phosphate bond hydrolysis by NUDT proteins +Antigen processing-Cross presentation +Intrinsic Pathway for Apoptosis +EGFR +Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex +RAF/MAP kinase cascade +Nucleobase catabolism +PSMD2 +Polymerase switching +RHO GTPase Effectors +Homology Directed Repait +outcome +CCT6A +Purine catabolism +G2/M Checkpoints +ER-Phagosome pathway +PTGES3 +HDR or Single Strand Annealing +Signaling by Rho GTPases +Golgi Cisternae Pericentriolar Stack Reorganization +NUDT1 +G2/M DNA damage checkpoint +MAPK1/MAPK3 signaling +Downregulation of ERBB2:ERBB3 signaling +YWHAZ +Cap-dependent translation +GPCR downstream signalling +Regulation of RAS by GAPs +RUNX1 +Signaling by Overexpressed Wild-Type EGFR in Cancer +Glycosaminoglycan metabolism +Inhibition of Signaling by Overexpressed EGFR +AKT2 residual +residual +residual +residualTCGA-55-8621 +Processive synthesis on +HDR through +Phosphaste bond hydrolysis +Chk1/Chk2(Cds1) mediated +Survival Month: 16.92 +the lagging strand +homologous recombination +by NUDT proteins +inactivation of Cyclin B:Cdk1 complex +High Attn +TCGA-78-7153 +Survival Month: 119.42 +LowAttnFigure 13: Inspecting and interpreting PONET on TCGA-LUSC. Sankey diagram visualization +of the inner layers of PONET shows the estimated relative importance of different nodes in each +layer. Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes in +each layer. +Figure 14: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-LUSC. +21 + +Gene +Pathways +DLG1 +Calmodulin induced events +TCF transactivating complex +Cell-extracellular matrix interactions +UBA52 +CD28 dependent PI3K/Akt signaling +Pentose phosphate pathway disease +Neurotransmitterclearance +PPP2R5E +PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling +Signaling by NTRK3 (TRKC) +rRNA processing in the mitochondrion +PSMC5 +NrCAM interactions +Interferon gamma signaling +TCR signaling +RAC1 +Constitutive Signaling by NOTCH1 +Glutathione conjugation +Hedgehog 'on' state +outcome +CREB1 +MAP2K and MAPK activation +Toll Like Receptor 10 (TLR10) Cascade +Base-Excision Repair, AP Site Formation +ADAM17 +Negative regulation of MAPK pathway +Defects in biotin (Btn) metabolism +Hedgehog 'off state +PAK2 +Cleavage of the damaged purine +SUMO E3 ligases +Regulation of Hypoxia-inducible Factor (HIF) by oxygen +PSMC2 +AXIN missense mutants destabilize the destruction complex +RAF-independent MAPK1/3 activation +Signaling by NOTCH4 +NCOA1 +SHC-related events triggered by IGF1R +Golgi-to-ER retrograde transport +Nucleobase biosynthesis +residual +residual +residual +residualTCGA-18-3414 +CD28 dependent +PI5P PP2A and IER3 +Calmodulin induced events + PI3K/Akt signaling +regulate PI3K/AKT signaling +NrCAM interactions +Survival Month: 23.52 +High Attn +TCGA-33-4538 +Survival Month: 97.86 +Low AttnFigure 15: Inspecting and interpreting PONET on TCGA-PAAD. Sankey diagram visualization +of the inner layers of PONET shows the estimated relative importance of different nodes in each +layer. Nodes in the first layer represent genes; the next layers represent pathways; and the final layer +represents the model outcome. Different layers are linked by weights. Nodes with darker colors are +more important, while transparent nodes represent the residual importance of undisplayed nodes in +each layer. +Figure 16: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-PAAD. +22 + +Gene +Pathways +PTGES3 + SMAD4 MH2 Domain Mutants in Cancer +Interleukin-6 family signaling +Mitotic G1-G1/S phases +C1QC +SMAD2/3 MH2Domain Mutants in Cancer +Signaling by FGFR3 +Class I MHC pathway +PSMD3 +Synthesis of Prostaglandins and Thromboxanes +AXIN mutants destabilize the destruction complex, activating WNT signalir +Triglyceride metabolism +CABIN1 +Regulation by c-FLIP +Influenza Viral RNA Transcription and Replication +RIPK1-mediated regulated necrosis +NRAS +C1QB +Formation of Senescence-Associated Heterochromatin Foci (SAHF) +Thyroxine biosynthesis +Reversal of alkylation damage by DNA dioxygenases +outcome +EIF3E +Coenzyme A biosynthesis +Fusion and Uncoating of the Infuenza Virion +PIP3 activates AKT signaling +MGAT4B +PPCS +RUNX3 regulates BCL2L11 (BIM) transcription +EPH-Ephrin signaling +Metabolism of cofactors +YWHAG +FGFR1 mutant receptor activation +Signaling by NOTCH1 HD Domain Mutants in Cancer +Platelet Aggregation (Plug Formation) +MET activates RAP1 and RAC1 +Resolution of AP sites via the single-nucleotide replacement pathway +GPCR downstream signalling +Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex +Regulation of innate immune responses to cytosolic DNA +RNA Polymerase I Promoter Clearance +residual +residual +residual +residualTCGA-2J-AABO +Formation of senescence +Survival Month: 14.45 +Regulation by c-FLIP +associated heterochromatin foci +Coenzyme A biosynthesis +MET activates RAP1 and RAC1 +High Attn +TCGA-3A-A9IH +Survival Month: 33.54 +Low Attn \ No newline at end of file diff --git a/29E0T4oBgHgl3EQfeAAf/content/tmp_files/load_file.txt b/29E0T4oBgHgl3EQfeAAf/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..80a3b91c49a29445ea44ba47fc29ceeebecfbf33 --- /dev/null +++ b/29E0T4oBgHgl3EQfeAAf/content/tmp_files/load_file.txt @@ -0,0 +1,1254 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf,len=1253 +page_content='DEEP BIOLOGICAL PATHWAY INFORMED PATHOLOGY- GENOMIC MULTIMODAL SURVIVAL PREDICTION Lin Qiu1, Aminollah Khormali2, Kai Liu1 1 Division of Research and Early Development, Genentech {qiul13, liuk3}@gene.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com 2 Department of Electrical and Computer Engineering, University of Central Florida aminollah.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='khormali@gmail.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com ABSTRACT The integration of multi-modal data, such as pathological images and genomic data, is essential for understanding cancer heterogeneity and complexity for personalized treatments, as well as for enhancing survival predictions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Despite the progress made in integrating pathology and genomic data, most existing methods cannot mine the complex inter-modality relations thoroughly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Additionally, identifying explainable features from these models that govern preclinical discovery and clinical prediction is crucial for cancer diagnosis, prognosis, and therapeutic response studies.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We propose PONET- a novel biological pathway informed pathology-genomic deep model that integrates pathological images and genomic data not only to improve survival prediction but also to identify genes and pathways that cause different survival rates in patients.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Empirical results on six of The Cancer Genome Atlas (TCGA) datasets show that our proposed method achieves superior predictive performance and reveals meaningful biological interpretations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The proposed method establishes insight into how to train biologically informed deep networks on multimodal biomedical data which will have general applicability for understanding diseases and predicting response and resistance to treatment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 1 INTRODUCTION Manual examination of hematoxylin and eosin (H&E)-stained slides of tumor tissue by pathologists is currently the state-of-the-art for cancer diagnosis (Chan, 2014).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The recent advancements in deep learning for digital pathology have enabled the use of whole-slide images (WSIs) for computational image analysis tasks, such as cellular segmentation (Pan et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Hou et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020), tissue classification and characterization (Hou et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2016;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Hekler et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2019;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Iizuka et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' While H&E slides are important and sufficient to establish a profound diagnosis, genomics data can provide a deep molecular characterization of the tumor, potentially offering the chance for prognostic and predictive biomarker discovery.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Cancer prognosis via survival outcome prediction is a standard method used for biomarker discovery, stratification of patients into distinct treatment groups, and therapeutic response prediction (Cheng et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Ning et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' WSIs exhibit enormous heterogeneity and most approaches adopt a two-stage multiple instance learning-based (MIL) approach for the representation learning of WSIs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Firstly, instance-level feature representations are extracted from image patches in the WSI, and then global aggregation schemes are applied to the bag of instances to obtain a WSI-level representation for subsequent modeling purpose (Hou et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2016;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Courtiol et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2019;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Wulczyn et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Lu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Therefore, multimodal survival prediction faces an additional challenge due to the large data heterogeneity gap between WSIs and genomics, and many existing approaches use simple multimodal fusion mechanisms for feature integration, which prevents mining important multimodal interactions (Mobadersany et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The incorporation of biological pathway databases in a model takes advantage of leveraging prior biological knowledge so that potential prognostic factors of well-known biological functionality can be identified (Hao et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Moreover, encoding biological pathway information into the neural 1 arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='02383v1 [q-bio.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='QM] 6 Jan 2023 Figure 1: Overview of PONET model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' networks achieved superior predictive performance compared with established models (Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Based on the current challenges in multimodal fusion of pathology and genomics and the potential prognostic interpretation to link pathways and clinical outcomes in pathway-based analysis, we propose a novel biological pathway-informed pathology-genomic deep model, PONET, that uses H&E WSIs and genomic profile features for survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The proposed method contains four major contributions: 1) PONET formulates a biological pathway-informed deep hierarchical multimodal integration framework for pathological images and genomic data;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2) PONET captures diverse and comprehensive modality-specific and cross-modality relations among different data sources based on the factorized bilinear model and graph fusion network;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3) PONET reveals meaningful model interpretations on both genes and pathways for potential biomarker and therapeutic target discovery;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET also shows spatial visualization of the top genes/pathways which has enormous potential for novel and prognostic morphological determinants;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 4) We evaluate PONET on six public TCGA datasets which showed superior survival prediction comparing to state-of-the-art methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 1 shows our model framework.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2 RELATED WORK Multimodal Fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Earlier works on multimodal fusion focus on early fusion and late fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Early fusion approaches fuse features by simple concatenation which cannot fully explore intra-modality dynamics (Wöllmer et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2013;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Poria et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2016;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Zadeh et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2016).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In contrast, late fusion fuses different modalities by weighted averaging which fails to model cross-modal interactions (Nojavanasghari et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2016;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Kampman et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The exploitation of relations within each modality has been successfully introduced in cancer prognosis via bilinear model (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021b) and graph-based model (Subramanian et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Adversarial Representation Graph Fusion (ARGF) (Mai et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020) interprets multimodal fusion as a hierarchical interaction learning procedure where firstly bimodal interactions are generated based on unimodal dynamics, and then trimodal dynamics are generated based on bimodal and unimodal dynamics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We propose a new hierarchical fusion framework with modality-specific and cross-modality attentional factorized bilinear modules to mine the comprehensive modality interactions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Our proposed hierarchical fusion framework is different from ARGF in the following ways: 1) We take the sum of the weighted modality-specific representation as the unimodal representation instead of calculating the weighted average of the modality-specific representation in ARGF;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2) For higher level’s fusion, ARGF takes the original embeddings of each modality as input while we use the weighted modality-specific representations;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3) We argue that ARGF takes redundant information during their trimodal dynamics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Multimodal Survival Analysis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' There have been exciting attempts on multimodal fusion of pathol- ogy and genomic data for cancer survival prediction (Mobadersany et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Cheerla & Gevaert, 2019;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' However, these multimodal fusion based methods fail to model the interac- tion between each subset of multiple modalities explicitly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Kronecker product considers pairwise interactions of two input feature vectors by producing a high-dimensional feature of quadratic ex- pansion (Zadeh et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017), and showed its superiority in cancer survival prediction (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021b;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Despite promising results,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' using Kronecker product in multimodal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Unimodal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Gene layer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Pathway layer Hidden layer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MFB ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='>C ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Atten ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='um ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='↑ ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Bimodal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='himz ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Gene ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hg ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Gene ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MFB ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='α ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Multimodal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Atten ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='zuuy ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Wm1m2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Representation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm1m2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='r ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Cox ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Pathway ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Pathology ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Trimodal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='↓ ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hp ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hmi ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='fe ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MFB ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Atten ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Wm1m2m3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hm1m2m3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CNV + MUT ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='hc ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Spatial Pathway ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Data embedding ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Hierarchical multimodal fusion ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Interpretationfusion may introduce a large number of parameters that may lead to high computational cost and risk ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='of overfitting (Kim et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Liu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021), thus limiting its applicability and improvement in performance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To overcome this drawback, hierarchical factorized bilinear fusion for cancer survival prediction (HFBSurv) (Li et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022) uses factorized bilinear model to fuse genomic and image features, dramatically reducing computational complexity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET differs from HFBSurv in two ways: 1) PONET’s multimodal framework has three levels of hierarchical fusion module includ- ing unimodal, bimodal, and trimodal fusion while HFBSurv only considers within-modality and cross-modality fusion which we argue it is not adequate for mining the comprehensive interactions;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2) PONET leverages biological pathway informed network for better prediction and meaningful interpretation purposes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Pathway-associated Sparse Neural Network.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The pathway-based analysis is an approach that a number of studies have investigated to improve both predictive performance and biological inter- pretability (Jin et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2014;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Cirillo et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Hao et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Moreover, pathway-based approaches have shown more reproducible analysis results than gene expression data analysis alone (Li et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2015;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Mallavarapu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' These pathway-based deep neural networks can only model genomic data which severely inhibits their applicability in current biomedical re- search.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Additionally, the existing pathway-associated sparse neural network structures are limited for disease mechanism investigation: there is only one pathway layer in PASNet (Hao et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018) which contains limited biological prior information to deep dive into the hierarchical pathway and biological process relationships;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' P-NET (Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021) calculates the final prediction by taking the average of all the gene and pathway layers’ outputs, and this will bias the learning process because it will put more weights for some layers’ outputs while underestimating the others.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3 METHODOLOGY 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1 PROBLEM FORMULATION AND NOTATIONS The model architecture of PONET is presented in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 1, where three modalities are included as input: gene expression g ∈ Rdg, pathological image p ∈ Rdp, and copy number (CNV) + mutation (MUT) CNV + MUT ∈ Rdc, with dp being the dimensionality of p and so on.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We define a hierarchical factorized bilinear fusion model for PONET.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We build a sparse biological pathway-informed embed- ding network for gene expression.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' A fully connected (FC) embedding layer for both preprocessed pathological image feature (fp) and the copy number + mutation (fc) to map feature into similar embedding space for alleviating the statistical property differences between modalities, the three network architecture details are in Appendix C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We label the three modality embeddings as hm, m ∈ {g, p, c}, the superscript/subscript u, b, and t represents unimodal fusion, biomodal fusion and trimodal fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' After that, the embeddings of each modality are first used as input for unimodal fusion to generate the modality-specific representation hu m = ωmˆhm, ωm represent the modality-specific im- portance, the feature vector of the unimodal fusion is the sum of all modality-specific representations hu = � m hu m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In the bimodal fusion, modality-specific representations from the output of unimodal fusion are fused to yield cross-modality representations hb m1m2 = ωm1m2ˆhm1m2, m1, m2 ∈ {p, c, g} and m1 ̸= m2, ωm1m2 represents the corresponding cross-modality importance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Similarly, the feature vector of bimodal fusion is calculated as hb = � m1,m2 hb m1m2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We propose to build a trimodal fusion to take each cross-modality representation from the output of bimodal fusion to mine the interactions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Similarly to the bimodal fusion architecture, the trimodal fusion feature vector will be ht = � m1,m2,m3 ωm1m2m3ˆhm1m2m3, m1, m2, m3 ∈ {p, c, g} and m1 ̸= m2 ̸= m3, ωm1m2m3 represents the corresponding trimodal importance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Finally, PONET concatenates hu, hb, ht to obtain the final comprehensive multimodal representation and pass it to the Cox proportional hazards model (Cox, 1972;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Cheerla & Gevaert, 2019) for survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In the following sections we will describe our hierarchical factorized bilinear fusion framework, l, o, s represents the dimensionality of hm, zm, ˆhm1m2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 SPARSE NETWORK We design the sparse gene-pathway network consisting of one gene layer followed by three pathway layers.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' A patient sample of e gene expressions is formed as a column vector, which is denoted by X = [x1, x2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', xe], each node represents one gene.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The gene layer is restricted to have connections 3 73,703 x 50,706 px 224 x 224 px, mpp: 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5 Whole Slide Image WSI patching Image Augmentation 𝑔!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (#) 𝑞!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (#) 𝑔!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' "(#) 𝑓!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (#) 𝑓!' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' "(#) 𝑦" \'𝑦# 𝑧" ̂𝑧# 𝑝" 𝐿(𝑝, 𝑧) Visual representation learning using SSL ViT Student Network Teacher Network Patch features 𝑣 𝑢 Figure 2: Overall framework of the visual representation extraction using pre-trained self-supervised vision transformer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' reflecting the gene-pathway relationships curated by the Reactome pathway dataset (Fabregat et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The connections are encoded by a binary matrix M ∈ Ra×e, where a is the number of pathways and e is the number of genes, an element of M, mij, is set to one if gene j belongs to pathway i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The connections that do not exist in the Reactome pathway dataset will be zero-out.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For the following pathway-pathway layers, a similar scheme is applied to control the connection between consecutive layers to reflect the parent-child hierarchical relationships that exist in the Reactome dataset.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The output of each layer is calculated as y = f[(M ∗ W)T X + ϵ] (1) where f is the activation function, M represents the binary matrix, W is the weights matrix, X is the input matrix, ϵ is the bias vector, and ∗ is the Hadamard product.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We use tanh for the activation of each node.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We allow the information flow from the biological prior informed network starting from the first gene layer to the last pathway layer, and we label the last layer output embeddings of the sparse network for gene expression as hg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3 UNIMODAL FUSION Bilinear models (Tenenbaum & Freeman, 2000) provide richer representations than linear models.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Given two feature vectors in different modalities, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', the visual features x ∈ Rm×1 for an image and the genomic features y ∈ Rn×1 for a genomic profile, the bilinear model uses a quadratic expansion of linear transformation considering every pair of features: zi = xT Wiy (2) where Wi ∈ Rm×n is a projection matrix, zi ∈ R is the output of the bilinear model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Bilinear models introduce a large number of parameters which potentially lead to high computational cost and overfitting risk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To address these issues, Yu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (2017) develop the Multi-modal Factorized Bilinear pooling (MFB) method, which enjoys the dual benefits of compact output features and robust expressive capacity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Inspired by the MFB (Yu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017) and its application in pathology and genomic multimodal learning (Li et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022), we propose unimodal fusion to capture modality-specific representations and quantify their importance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The unimodal fusion takes the embedding of each modality hm as input and factorizes the projection matrix Wi in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (2) as two low-rank matrices: zi = hT mWihm = k� d=1 hT mum,dvT m,dhm = 1T (U T m,ihm ◦ V T m,ihm), m ∈ {p, c, g} (3) we get the output feature zm: zm = SumPooling � ˜U T mhm◦ ˜V T mhm, k � , m ∈ {p, c, g} (4) where k is the latent dimensionality of the factorized matrices.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' SumPooling (x, k) function performs sum pooling over x by using a 1-D non-overlapped window with the size k, ˜Um ∈ Rl×ko and ˜Vm ∈ Rl×ko are 2-D matrices reshaped from Um and Vm, Um =[Um,1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' , Um,h] ∈ Rl×k×o and Vm = [Vm,1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' , Vm,h] ∈ Rl×k×o.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Each modality-specific representation ˆhm ∈ Rl+o is obtained as: ˆhm = hm©zm, m ∈ {p, c, g} (5) 4 where © denotes vector concatenation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We also introduce a modality attention network Atten ∈ Rl+o → R1 to determine the weight for each modality-specific representation to quantify its impor- tance: ωm = Atten(ˆhm;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' ΘAtten), m ∈ {p, c, g} (6) where ωm is the weight of modality m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In practice, Atten consists of a sigmoid activated dense layer parameterized by ΘAtten.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Therefore, the output of each modality in unimodal fusion, hu m, is denoted as ωmˆhm ∈ Rl+o, m ∈ {p, c, g}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Accordingly, the output of unimodal fusion, hu, is the sum of each weighted modality-specific representation ωmˆhm, m ∈ {p, c, g} which is different from ARGF (Mai et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020) that used the weighted average of different modalities as the unimodal fusion output.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4 BIMODAL AND TRIMODAL FUSION Bimodal fusion aims to fuse diverse information of different modalities and quantify different importance for them.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' After receiving the modality-specific representations hu m from the unimodal fusion, we can generate the cross-modality representation ˆhm1m2 ∈ Rs similar to Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (4) : ˆhm1,m2 = Sum Pooling � ˜U T m1hu m1◦ ˜V T m2hu m2, k � , m1, m2 ∈ {p, c, g}, m1 ̸= m2 (7) where ˜U T m1 ∈ R(l+o)×ks and ˜V T m2 ∈ R(l+o)×ks are 2-D matrices reshaped from Um1 and Vm2 and Um1 = [Um1,1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' , Um1,s] ∈ R(l+o)×k×s and Vm2 = [Vm2,1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' , Vm2,s] ∈ R(l+o)×k×s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We leverage a bimodal attention network (Mai et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020) to identify the importance of the cross- modality representation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The similarity Sm1m2 ∈ R1 of hu m1 and hu m2 is first estimated as follows: Sm1,m2 = l+o � i=1 � eωm1 hu m1,i �l+o j=1 eωm1hu m1,j � � eωm2hu m2,i �l+o j=1 eωm2hu m2,j � (8) where the computed similarity is in the range of 0 to 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Then, the cross-modality importance ωm1m2 is obtained by: ωm1m2 = eˆωmimj � mi̸=mj eˆωmimj , ˆωm1m2 = ωm1 + ωm2 Sm1m2 + S0 (9) where S0 represents a pre-defined term controlling the relative contribution of similarity and modality- specific importance, and here is set to 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Therefore, the output of bimodal fusion, hb, is the sum of each weighted cross-modality representation ωm1m2ˆhm1m2, m1, m2 ∈ {p, c, g} and m1 ̸= m2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In trimodal fusion, each bimodal fusion output is fused with the unimodal fusion output that does not contribute to the formation of the bimodal fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The output for each corresponding trimodal representation is ˆhm1m2m3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In addition, trimodal attention was applied to identify the importance of each trimodal representation, ωm1m2m3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The output of the trimodal fusion, ht, is the sum of each weighted trimodal representation ωm1m2m3ˆhm1m2m3, m1, m2, m3 ∈ {p, c, g} and m1 ̸= m2 ̸= m3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5 SURVIVAL LOSS FUNCTION We train the model through the Cox partial likelihood loss (Cheerla & Gevaert, 2019) with l1 regularization for survival prediction, which is defined as: ℓ(Θ) = − � i:Ei=1 � �ˆhΘ (xi) − log � j:Ti>Tj exp � ˆhΘ (xj) � � � + λ (∥Θ∥1) (10) where the values Ei, Ti and xi for each patient represent the survival status, the survival time, and the feature, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Ei = 1 means event while Ei = 0 represents censor.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' ˆhΘ is the neural network model trained for predicting the risk of survival, Θ is the neural network model parameters, and λ is a regularization hyperparameter to avoid overfitting.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 5 4 EXPERIMENTS 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1 EXPERIMENTAL SETUP Datasets.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To validate our proposed method, we used six cancer datasets from The Cancer Genome Atlas (TCGA), a public cancer data consortium that contains matched diagnostic WSIs and genomic data with labeled survival times and censorship statuses.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The genomic profile features (mutation status, copy number variation, RNA-Seq expression) are preprocessed by Porpoise 1 (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For this study, we used the following cancer types: Bladder Urothelial Carcinoma (BLCA) (n = 437), Kidney Renal Clear Cell Carcinoma (KIRC) (n = 350), Kidney Renal Papillary Cell Carcinoma (KIRP) (n = 284), Lung Adenocarcinoma (LUAD) (n = 515), Lung Squamous Cell Carcinoma (LUSC) (n = 484), Pancreatic adenocarcinoma (PAAD) (n = 180).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We downloaded the same diagnostic WSIs from the TCGA website 2 that were used in Porpoise study to match the paired genomic features and survival times.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The feature alignment table for all the cancer types is in Appendix A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For each WSI, automated segmentation of tissue was performed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Following segmentation, image patches of size 224 × 224 were extracted without overlap at the 20 X equivalent pyramid level from all tissue regions identified while excluding the white background and selecting only patches with at least 50% tissue regions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Subsequently, a visual representation of those patches is extracted with a vision transformer (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021a) pre-trained on the TCGA dataset through a self-supervised constructive learning approach, such that each patch is represented as a 1 × 2048 vector.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2 shows the framework for the visual representation extraction by vision transformer (VIT).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Survival outcome information is available at the patient level, we aggregated the patch-level feature into slide level feature representations based on an attention-based method (Lu et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Ilse et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Baselines.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Using the same 5-fold cross-validation splits for evaluating PONET, we implemented and evaluated six state-of-the-art methods for survival outcome prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Additionally, we included three variations of PONET: a) PONET-O represents only genomic data, and pathway architecture for the gene expression are included in the model;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' b) PONET-OH represents only genomic and pathological image data but without pathway architecture in the model;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' c) PONET is our full model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For all methods, we use the same VIT feature extraction pipeline for WSIs, as well as identical training hyperparameters and loss functions for supervision.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Training details and the parameters tuning can be found in Appendix C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' CoxPH (Cox, 1972) represents the standard Cox proportional hazard models.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' DeepSurv (Katzman et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018) is the deep neural network version of the CoxPH model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Pathomic Fusion (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022a) as a pioneered deep learning-based framework for predicting survival outcomes by fusing pathology and genomic multimodal data, in which Kronecker product is taken to model pairwise feature interactions across modalities.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' GPDBN (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021b) adopts Kronecker product to model inter-modality and intra-modality relations between pathology and genomic data for cancer prognosis prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' HFBSurv (Li et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022) extended GPDBN using the factorized bilinear model to fuse genomic and pathology features in a within-modality and cross-modalities hierarchical fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Porpoise (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b) applied the discrete survival model and Kronecker product to fuse pathology and genomic data for survival prediction (Zadeh & Schmid, 2020).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Evaluation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For each cancer dataset, we used the cross-validated concordance index (C-Index) (Appendix B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1) (Harrell et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 1982) to measure the predictive performance of correctly ranking the predicted patient risk scores with respect to overall survival.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 RESULTS Comparison with Baselines.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In combing pathology image, genomics, and pathway network via PONET, our approach outperforms CoxPH models, unimodal networks, and previous deep learning- based approaches on pathology-genomic-based survival outcome prediction (Table 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The results show that deep learning-based approaches generally perform better than the CoxPH model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET achieves superior C-index values in all six cancer types.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' All versions of PONET outperform Pathomic 1https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/mahmoodlab/PORPOISE 2https://www.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='cancer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='gov/about-nci/organization/ccg/research/structural-genomics/tcga 6 Table 1: C-Index (mean ± standard deviation) of PONET and ablation experiments in TCGA survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The top two performers are highlighted in bold.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Model TCGA-BLCA TCGA-KIRC TCGA-KIRP TCGA-LUAD TCGA-LUSC TCGA-PAAD CoxPH (Age + Gender) (Cox, 1972) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='525 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='130 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='550 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='070 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='544 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='050 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='531 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='082 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='532 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='094 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='539 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='092 DeepSurv (Kampman et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='580 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='062 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='620 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='043 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='560± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='063 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='534 ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='077 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='541 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='066 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='544 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='076 GPDBN (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021b) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='612 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='042 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='647 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='073 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='669 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='109 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='565 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='057 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='545 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='063 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='571 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='060 HFBSurv (Li et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='622 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='043 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='667 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='053 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='769 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='109 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='581 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='017 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='548 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='049 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='591 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='052 Pathomic Fusion (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022a) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='586 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='062 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='598 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='060 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='577 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='032 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='543 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='065 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='523 ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='045 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='545 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='064 Porpoise (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='617 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='048 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='711 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='051 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='811 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='089 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='586 ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='527 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='043 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='591 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='064 PONET-O (ours) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='596 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='664 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='761 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='093 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='623 ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='062 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='538 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='037 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='598 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='027 PONET-OH (ours) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='625 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='063 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='695 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='043 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='776 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='123 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='618 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='049 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='553 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='049 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='591 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='050 PONET (ours) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='643 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='037 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='726 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='829 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='054 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='646 ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='047 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='567 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='066 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='639 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='080 Table 2: Evaluation of PONET on different fusion methods and pathway designs by C-index (mean ± standard deviation).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The best performer is highlighted in bold.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Methods TCGA-BLCA TCGA-KIRP TCGA-LUAD TCGA-LUSC TCGA-PAAD Single fusion Simple concatenation 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='585 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='045 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='652 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='049 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='554 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='065 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='525 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='066 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='568 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='075 Element-wise addition 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='592 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='047 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='655 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='055 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='587 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='065 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='522 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='046 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='588 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='055 Tensor fusion (Zadeh et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='605 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='046 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='775 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='053 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='595 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='060 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='545 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='045 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='592 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='061 Hierarchical fusion Unimodal 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='596 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='035 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='783 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='063 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='611 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='553 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='073 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='595 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='053 Bimodal 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='602 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='062 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='789 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='053 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='601 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='056 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='552 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='051 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='598 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='083 ARGF (Mai et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='597 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='054 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='792 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='043 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='614 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='051 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='556 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='063 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='602 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='065 Unimodal + Bimodal 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='614 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='052 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='803 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='061 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='631 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='044 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='578 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='058 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='615 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='057 Pathway design PASNet (Hao et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='606 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='045 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='793 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='051 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='621 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='061 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='551 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='069 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='625 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='057 P-NET (Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021) 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='622 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='047 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='802 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='071 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='625 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='045 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='562 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='054 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='627 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='073 PONET 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='643 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='037 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='829 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='054 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='641 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='046 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='567 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='066 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='639 ± 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='070 Fusion by a big margin.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Pathomic Fusion uses Kronecker product to fuse the two modalities, and that’s also the reason why other advanced fusion methods, like GPDBN and HFBSurv, achieve better performance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Also, we argue that Pathomic Fusion extracts the region of interest of pathology image for feature extraction might limit the understanding of the tumor microenvironment of the whole slide.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' HFBSurv shows better performance than GPDBN and Pathomic Fusion which is consistent with their findings, and these results further demonstrate that the hierarchical factorized bilinear model can better mine the rich complementary information among different modalities compared to the Kronecker product.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Porpoise performs similarly with PONET on TCGA-KIRC and TCGA-KIRP and outperformed HFBSurv in these two studies, this probably is due to Porpoise partitioned the survival time into different non-overlapping bins and parameterized it as a discrete survival model (Zadeh & Schmid, 2020) which works better for these two cancer types.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In other cases, Porpoise performs similarly to HFBSurv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Note: the results of Porpoise are from their paper (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Additionally, we can see that PONET consistently outperforms PONET-O and PONET-OH indi- cating the effectiveness of the biological pathway-informed neural network and the contribution of pathological image for the overall survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Ablation Studies.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To assess whether the impact of hierarchical factorized bilinear fusion strategy is indeed effective, we compare PONET with four single-fusion methods: 1) Simple concatenation: concatenate each modality embeddings;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2) Element-wise addition: element-wise addition from each modality embeddings;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3) Tensor fusion (Zadeh et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017): Kronecker product from each modality embeddings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Table 2 shows the C-index values of different methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We can see that PONET achieves the best performance and shows remarkable improvement over single-fusion methods on different cancer type datasets.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For example, PONET outperforms the Simple concatenation by 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4% (TCGA-BLCA), 27% (TCGA-KIRP), 15% (TCGA-LUAD), 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0% (TCGA-LUSC), and 11.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4% (TCGA-PAAD), etc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Furthermore, we adopted five different configurations of PONET to evaluate each hierarchical component of the proposed method: 1) Unimodal: unimodal fusion output as the final feature representation;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 2) Bimodal: bimodal fusion output as the final feature representation;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3) Unimodal + Bimodal: hierarchical (include both unimodal and bimodal feature representation) fusion;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 4) ARGF: ARGF (Mai et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020) fusion strategy;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 5) PONET: our proposed hierarchical strategy by incorporating unimodal, bimodal, and trimodal fusion output.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' As shown in Table 2, Unimodal + Bimodal performs better than Unimodal and Bimodal which demonstrates that Unimodal + Bimodal can capture the relations within each modality and across modalities.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' ARGF performs worse than Unimodal + Bimodal and far worse than PONET across all the cancer types.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET outperforms 7 Figure 3: Inspecting and interpreting PONET on TCGA-KIRP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' a: Sankey diagram visualization of inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer, H1 presents the gene layer, and H2-H4 represent pathway layers;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' b: Co-attention visualization of top 4 ranked pathways in one case of TCGA-KIRP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Unimodal + Bimodal in 4 out of 5 cancer types indicating that three layers of hierarchical fusion can mine the comprehensive interactions among different modalities.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To evaluate our sparse gene-pathway network design, we compare PONET with PASNet (Hao et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018) and P-NET (Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021) pathway architecture, PASNet performs the worst due to the fact that it only has one pathway layer in the network, and thus limited prior information was used to predict the outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET constantly outperforms P-NET across all the cancer types, which demonstrates that averaging all the intermediate layers’ output for the final prediction cannot fully capture the prior information flow among the hierarchical biological structures.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Model Interpretation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We discuss the model interpretation results for cancer type TCGA-KIRP here and the results for other cancer types are included in the Appendix C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To understand the interactions between different genes, pathways, and biological processes that contributed to the predictive performance and to study the paths of impact from the input to the outcome, we visualized the whole structure of PONET with the fully interpretable layers after training (Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3 a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To evaluate the relative importance of specific genes contributing to the model prediction, we inspected the genes layer and used the Integrated Gradients attribution (Sundararajan et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017) method to obtain the total importance score of genes, and the modified ranking algorithm details are included in the Appendix B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Highly ranked genes included KRAS, PSMB6, RAC1, and CTNNB1 which are known kidney cancer drivers previously (Yang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Shan et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Al-Obaidy et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2020;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Guo et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' GBN2, a member of the guanine nucleotide-binding proteins family, has been reported that the decrease of its expression reduced tumor cell proliferation (Zhang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2019).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' A recent study identified a strong dependency on BCL2L1, which encodes the BCL-XL anti-apoptotic protein, in a subset of kidney cancer cells (Grubb et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2022).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' This biological interpretability revealed established and novel molecular features contributing to kidney cancer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In addition, PONET selected a hierarchy of pathways relevant to the model prediction, including downregulation of TGF-β receptor signaling, regulation of PTEN stability and activity, the NLRP1 inflammasome, and noncanonical activation of NOTCH3 by PSEN1, PSMB6, and BCL2L1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' TGF-β signaling is increasingly recognized as a key driver in cancer, and in progressive cancer tissues TGF-β promotes tumor formation, and its increased expression often correlates with cancer malignancy (Han et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2018).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Noncanonical activation of NOTCH3 was reported to limit tumor angiogenesis and plays a vital role in kidney disease (Lin et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2017).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='8 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='a ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='H1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='H2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='H3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='H4 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='KRAS ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Downregulation of TGF-beta receptor signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='TGF-beta receptor signaling activates SMADs ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Neurodegenerative Diseases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMB6 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of PTEN stability and activity ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NOTCH3 Activation and Transmission of Signal ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Cellular Senescence ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RAC1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Calmodulin induced events ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Semaphorin interactions ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signal amplification ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CTNNB1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='The NLRP1 inflammasome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Downstream signaling events of B Cell Receptor ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by FGFR ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='BCL2L1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Noncanonical activation of NOTCH3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='M Phase ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='LeadingStrand Synthesis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='GNB2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Synthesis of PIPs in the nucleus ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Biosynthesis of the N-glycan precursor ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ER to Golgi Anterograde Transport ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='outcome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSEN1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of PTEN gene transcription ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Biosynthesis of DHA-derived SPMs ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by TGF-beta Receptor Complex in Cancer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MTMR4 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RPA3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Viral mRNA Translation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Export of Viral Ribonucleoproteins from Nucleus ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Interferon Signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HDAC3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Complex I biogenesis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ZBP1(DAI) mediated induction of type I IFNs ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Transportofvitaminsandnucleosides ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Formation of tubulin folding intermediates by CCT/TriC Amine Oxidase reactions ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Transportofbilesalts,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='organicacids,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='andmetalions residual residual residual b TCGA-Q2-A5QZ Downregulation of TGF-beta Regulation of PTEN Survival Month: 14.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='06 receptor signaling stability and activity Calmodulin induced events The NLRP1 inflammasome High Attn Low AttnFigure 4: Kaplan-Meier analysis of patient stratification of low and high risk patients via four variations of PONET on TCGA-KIRP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Low and high risks are defined by the median 50% percentile of hazard predictions via each model prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Log-rank test was used to test for statistical significance in survival distributions between low and high risk patients.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To further inspect the pathway spatial association with the WSI slide we adopted the co-attention survival method MCAT (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021) between WSIs and genomic features on the top pathways of the second layer, visualized as a WSI-level attention heatmap for each pathway genomic embedding in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3 b (algorithm details are included in the Appendix B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We used the gene list from the top 4 pathways as the genomic features and trained MCAT on the TCGA-KIRP dataset for survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Overall, we observe that high attention in different pathways showed different spatial pattern associations with the slide.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' This heatmap can reflect genotype-phenotype relationships in cancer pathology.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The high attention regions (red) of dif- ferent pathways in the heatmap have positive associations with the predicted death risk while the low attention regions (blue) have negative associations with the predicted risk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' By further checking the cell types in high attention patches we can gain insights of prognostic morpho- logical determinants and have a better understanding of the complex tumor microenvironment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Table 3: Comparison of model complexity Methods Number of Parameters FLOPS Pathomic Fusion 175M 168G GPDBN 82M 91G HFBSurv 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3M 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5G PONET 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='8M 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1G Patient Stratification.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In visualizing the Kaplan-Meier survival curves of pre- dicted high risk and low risk patient populations, we plot four variations of PONET in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET-ARGF rep- resents the model that we use the hier- archical fusion strategy of ARGF in our pathway-informed PONET model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' From the results, PONET enables easy sepa- ration of patients into low and high risk groups with remarkably better stratifica- tion (P-Value = 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='60e-7) in comparison to the others.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Complexity Comparison.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We compared PONET with Pathomic Fusion, GPDBN, and HFBSurv since both Pathomic Fusion and GPDBN are based on Kronecker product to fuse different modalities while GPDBN and HFBSurv modeled inter-modality and intra-modality relations which have similar consideration to our method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' As illustrated in Table 3, PONET has 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='8M (M = Million) trainable parameters, which is approximately 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='6%, 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4%, and 900% of the number of parameters of Pathomic Fusion, GPDBN, and HFBSurv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' To assess the time complexity of PONET and the competitive methods, we calculate each method’s floating-point operations per second (FLOPS) in testing.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The results in Table 3 show that PONET needs 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1G during testing, compared with 168G, 91G, and 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5G in Pathomic Fusion, GPDBN, and HFBSurv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The main reason for fewer trainable parameters and the number of FLOPS lies in that PONET and HFBSurv perform multimodal fusion using the factorized bilinear model, and can significantly reduce the computational complexity and meanwhile obtain more favorable performance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PONET has one additional trimodal fusion which explains why it has more trainable parameters than HFBSurv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 5 CONCLUSION In this study, we pioneer propose a novel biological pathway-informed hierarchical multimodal fusion model that integrates pathology image and genomic profile data for cancer prognosis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In comparison to previous works, PONET deeply mines the interaction from multimodal data by conducting unimodal, bimodal and trimodal fusion step by step.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Empirically, PONET demonstrates 9 PONET-O PONET-OH PONET-ARGF PONET 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0 - 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0 P-Value =1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='90e-3 P-Value =7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='49e-4 P-Value =4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='27e-5 P-Value =6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='60e-7 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='9 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='9 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='9 0.' 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Tensor fusion network for multimodal sentiment analysis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, pp.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 1103–1114, 2017.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Shekoufeh Gorgi Zadeh and Matthias Schmid.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Bias in cross-entropy-based training of deep survival networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' IEEE Transactions on Pattern Analysis and Machine Intelligence, 43(9):3126–3137, 2020.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Qiang Zhang, Xiujuan Yin, Zhiwei Pan, Yingying Cao, Shaojie Han, Guojun Gao, Zhiqin Gao, Zhifang Pan, and Weiguo Feng.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Identification of potential diagnostic and prognostic biomarkers for prostate cancer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Oncology Letters, 18(4):4237–4245, 2019.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 13 Table 4: TCGA Data Feature Alignment Summary WSI CNV MUT RNA WSI+CNV+MUT WSI+MUT+RNA ALL Cancer Type BLCA 454 443 452 450 441 448 437 KIRC 517 509 357 514 352 355 350 KIRP 294 291 286 293 284 285 284 LUAD 528 522 523 522 519 519 515 LUSC 505 502 489 503 486 487 484 PAAD 208 201 187 195 187 180 180 A DATA Table 3 in Appendix A shows the number of patients with matched different data modalities: WSI (Whole slide image),' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' CNV (Copy number),' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' MUT (Mutation),' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' RNA (RNA-Seq gene expression).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For each TCGA dataset and each patient we have preprocessed data dimensions dg ∈ R1×2000 (RNA), dc ∈ R1×227 (CNV + MUT), and dp ∈ R1×32 (WSI) which will be used for our multimodal fusion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' B METHODS B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1 C-INDEX We use concordance-index (C-index) (Harrell et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 1982) to measure the performance of survival models.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' It evaluates the model by measuring the concordance of the ranking of predicted harzards with the true survival time of patients.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The range of the C-index is [0, 1], and larger values indicate better performance with a random guess leading to a C-index of 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 WSI REPRESENTATION LEARNING It has been shown that the WSI visual representations extracted by self-supervised learning methods on histopathological images are more accurate and transferable than the supervised baseline models on domain-irrelevant datasets such as ImageNet.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' In this work, a pre-trained Vision Transformer (ViT) model (Wang et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021a) that is trained on a large histopathological image dataset has been utilized for tile feature extraction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The model is composed of two main neural networks that learn from each other, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', student and teacher networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Parameters of the teacher model θt are updated using the student network with parameter θs using the update rule represented in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (11).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' θt ← τθt + (1 − τ)θs (11) Two different views of a given input H&E image x, uniformly selected from the training set I, are generated using random augmentations, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', u, v.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Then, student and teacher models generate two different visual representations according to u and v as y1 = f θs (u) and ˆy2 = f θt (v), respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Finally, the generated visual representations are transformed into latent space using linear projection as p1 = gθs � gθs (y1) � and ˆz2 = gθt (ˆy2) for student and teacher networks, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Similarly, feed- ing v and u to student and teacher networks leads to y2 = f θs (v) , ˆy1 = f θt (u) , p2 = gθs � gθs (y2) � and ˆz1 = gθt ( ˆy1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Finally, the symmetric objective function Lloss is optimized through minimizing the ℓ2 − norm distance between student and teacher as Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' (12) Lloss = 1 2L (p1, ˆz2) + 1 2L (p2, ˆz1) (12) where L(p, z) = − p ∥p∥2 · z ∥z∥2 and ∥ · ∥2 represents ℓ2 − norm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 14 B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3 SPARSE NETWORK FEATURE INTERPRETATION We use the Integrated Gradients attribution algorithm to rank the features in all layers.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Inspired by PNET (Elmarakeby et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021), to reduce the bias introduced by over-annotation of certain nodes (nodes that are members of too many pathways), we adjusted the Integrated Gradients scores using a graph informed function f that considers the connectivity of each node.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The importance score of each node i, Cl i is divided by the node degree dl i if the node degree is larger than the mean of node degrees plus 5σ where σ is the standard deviation of node degrees.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' dl i = fan − inl i + fan − outl i adjusted Cl i = f(x) = � Cl i dl i , dl i > µ + 5σ Cl i, otherwise B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4 CO-ATTENTION BASED PATHWAY VISUALIZATION After we got the ranking of top genes and pathways, we adopted the co-attention survival model (MCAT) (Chen et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=', 2021) to show the spatial visualization of genomic features.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We trained MACT on all our TCGA datasets, and MACT learns how WSI patches attend to genes when predicting patient survival.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We define each WSI patch representation and pathway genomic features as Hbag and Gbag.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The genomic features are the gene list values from the top pathways of each TCGA dataset.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The model uses Gbag ∈ RN×dg to guide the feature aggregation of Hbag ∈ RN×dp into a clustered set of gene-guided visual concepts �Hbag ∈ RN×dp , dg and dp represents the dimension for the pathway (number of genes involved in the pathway) and patch.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Through the following mapping: CoAttnG→H(G, H) = softmax � QK⊤ � dp � = softmax � WqGH⊤W⊤ s � dp � WvH → Acoattn WvH → �H where Wq, Ws, Wv ∈ Rdp×dp are trainable weight matrices multiplied to the queries Gbag and key-value pair (Hbag , Hbag ), and Acoattn ∈ RN×M is the co-attention matrix for computing the weighted average of Hbag .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Here, M represents the number of patches in one slide, and N represents the number of pathways (We trained the top four pathways, so N = 4 in our study).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' C EXPERIMENTS C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='1 NETWORK ARCHITECTURE Sparse network for gene: The final gene expression embedding is hg ∈ R1×50.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Pathology network: The slide level image feature representation is passed through an image embed- ding layer and encodes the embedding as hp ∈ R1×50.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' CNV + MUT network: Similarly as the pathology network, the patient level CNV + MUT feature representation is passed through an FC embedding layer and encodes the embedding as hc ∈ R1×50.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 EXPERIMENTAL DETAILS PONET.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The latent dimensionality of the factorized matrices k is a very important tuning parameter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We tune k = [3, 5, 10, 20, 30, 50] based on the testing C-index value (Appendix Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 5) and the loss of training and testing plot (Appendix Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 6) for each dataset.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We choose k to maximize the C-index value and also it should have stable convergence in both training and testing loss.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For example, we choose k = 10 in TCGA-KIRP for the optimized results.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We can see that in Appendix Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 5 the testing loss is quite volatile when k is less than 10.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Similarly, we choose k = [20, 10, 20, 20, 10] for TCGA-BLCA, TCGA-KIRC, TCGA-LUAD, TCGA-LUSC, and TCGA-PAAD, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 15 Figure 5: C-Index value under K = 3, 5, 10, 20, 30, 50 for TCGA-KIRP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The mean value and standard deviation for 5-fold cross-validation are plotted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The learning rate and the regularization hyperparameter λ for the Cox partial likelihood loss are also tunable parameters.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The model is trained with Adam optimizer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' For each training/testing pair, we first empirically preset the learning rate to 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2e-4 as a starting point for a grid search during training, the optimal learning rate is determined through the 5-fold cross-validation on the training set, C-index was used for the performance metric.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' After that, the model is trained on all the training sets and evaluated on the testing set.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We use 2e-3 through the experiments for λ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The batch size is set to 16, and the epoch is 100.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' During the training process, we carefully observe the training and testing loss for convergence (Figure 4 in Appendix C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The server used for experiments is NVIDIA GeForce RTX 2080Ti GPU.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' CoxPH.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We only include the age and gender for the survival prediction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Using CoxPHFitter from lifelines 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' DeepSurv 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We concatenate preprocessed pathological image features, gene expression, and copy number + mutant data in a vector to train the DeepSurv model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' L2 reg = 10.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0, dropout = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4, hidden layers sizes = [25, 25], learning rate = 1e-05, learning rate decay = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='001, momentum = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Pathomic Fusion 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' We use the pathomicSurv model which takes our preprocessed image feature, gene expression, and copy number + mutation as model input.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' k = 20, Learning rate is 2e-3, weight decay is 4e-4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The batch size is 16, and the epoch is 100.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Drop out rate is 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='25.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' GPDBN 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The learning rate is 2e-3, the batch size is 16, the weight decay is 1e-6, the dropout rate is 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3, and the epoch is 100.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' HFBSurv 7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' The learning rate is set to 1e-3, the batch size is 16, λ = 3e-3, weight decay is 1e-6, and the epoch is 100.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 3https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/CamDavidsonPilon/lifelines 4https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/czifan/DeepSurv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='pytorch 5https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/mahmoodlab/PathomicFusion 6https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/isfj/GPDBN 7https://github.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='com/Liruiqing-ustc/HFBSurv 16 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='8 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='6 C-Index 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0 5 10 20 30 50 3 KFigure 6: Train and test loss for TCGA-KIRP under K = 3, 5, 10, 20, 50 for 5-fold cross-validation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 17 Fold 1 Fold 2 Fold 3 Fold 4 Fold 5 Train K=3 Test K=5 K= 10 K= 20 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='06 K=50 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='65 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='60 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='50C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='3 ADDITIONAL RESULTS Figure 7: Inspecting and interpreting PONET on TCGA-BLCA.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Sankey diagram visualization of the inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Figure 8: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-BLCA.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 18 Gene Pathways GNB1 PI5P,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PP2Aand IER3RegulatePI3K/AKTSignaling Toll Like Receptor 10 (TLR10) Cascade Cell-extracellular matrix interactions PPP2R5E SHC-related events triggered by IGF1R Cell death signalling via NRAGE,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' NRIF and NADE ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RNA Polymerase II Transcription Elongation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='KRAS ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MAP2K and MAPK activation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Interferon gamma signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='rRNA processing in the mitochondrion ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Calmodulin induced events ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Mitotic Telophase/Cytokinesis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of Hypoxia-inducible Factor (HIF) by oxygen ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMA7 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Activation of G protein gated Potassium channels ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='FBXW7 Mutants and NOTCH1 in Cancer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='mRNA Splicing ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='KPNA2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='outcome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='YWHAB ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Activation of NF-kappaB in B cells ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Golgi-to-ER retrograde transport ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='TCR signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='GSK3B ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Gap junction degradation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by FGFR1 in disease ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Mitotic Spindle Checkpoint ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HSP90AB1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Phosphate bond hydrolysis by NUDT proteins ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Biosynthesis of DPA-derived SPMs ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ESR-mediated signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='TBK1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NEP/NS2 Interacts with the Cellular Export Machinery ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='TCF transactivating complex ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Fatty acid metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PIK3CA ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='p53-IndependentDNADamageResponse ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Interleukin-17 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Effects of PIP2 hydrolysis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residualTCGA-4Z-AA7Y ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PI5P,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' PP2A and IER3 SHC-related events PI3K/AKT Signaling MAP2K and MAPK activation Calmodulin induced events Survival Month: 50 triggered by IGF-1R High Attn TCGA-UY-A78N Survival Month: 86.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='76 Low AttnFigure 9: Inspecting and interpreting PONET on TCGA-KIRC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Sankey diagram visualization of the inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Figure 10: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-KIRC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 19 TCGA-A3-3313 Downregulation of MAP2K and MAPK activation Activation of the P53-Independent DNA ERBB2:ERBB3 signaling Survival Month: 24.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='15 pre-replicative complex damage response High Attn TCGA-A3-3320 Survival Month: 49.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='54 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Low AttnGene ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Pathways ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='TFDP2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Glucagon-type ligand receptors ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Class B/2 (Secretin family receptors) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='GPCR ligand binding ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MAPK3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Downregulation of ERBB2:ERBB3 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='G1/STransition ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='G1/S DNA Damage Checkpoints ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PTPN11 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MAP2K and MAPK activation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='p53-lndependent G1/S DNA damage checkpoint ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Mitotic G1-G1/S phases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ADCY5 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Activation of the pre-replicative complex ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RAF/MAP kinase cascade ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Defects in vitamin and cofactor metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMC2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='p53-Independent DNADamage Response ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CLEC7A (Dectin-1) signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MAPK1/MAPK3 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MTRR ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='outcome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PLCB1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Processing of DNA double-strand break ends ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Downregulation of ERBB2 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='C-type lectin receptors (CLRs) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMD11 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CLEC7A (Dectin-1) induces NFAT activation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Defects in cobalamin (B12) metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HIV Infection ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMF1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RHO GTPases Activate NADPH Oxidases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HDR or Single Strand Annealing ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by ERBB2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='IL6ST ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='SHC-related events triggered by IGF1R ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='G2/M Transition ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Fatty acid metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Activation of NOXA and translocation to mitochondria ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Activation of BH3-only proteins ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Mitotic G2-G2/M phases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residualFigure 11: Inspecting and interpreting PONET on TCGA-LUAD.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Sankey diagram visualization of the inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Figure 12: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-LUAD.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='20 ' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Intrinsic Pathway for Apoptosis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='EGFR ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RAF/MAP kinase cascade ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Nucleobase catabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMD2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Polymerase switching ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RHO GTPase Effectors ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Homology Directed Repait ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='outcome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CCT6A ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Purine catabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='G2/M Checkpoints ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ER-Phagosome pathway ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PTGES3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HDR or Single Strand Annealing ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by Rho GTPases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Golgi Cisternae Pericentriolar Stack Reorganization ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NUDT1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='G2/M DNA damage checkpoint ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MAPK1/MAPK3 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Downregulation of ERBB2:ERBB3 signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='YWHAZ ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Cap-dependent translation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='GPCR downstream signalling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of RAS by GAPs ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RUNX1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by Overexpressed Wild-Type EGFR in Cancer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Glycosaminoglycan metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Inhibition of Signaling by Overexpressed EGFR ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='AKT2 residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residualTCGA-55-8621 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Processive synthesis on ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='HDR through ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Phosphaste bond hydrolysis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Chk1/Chk2(Cds1) mediated ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Survival Month: 16.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='92 the lagging strand homologous recombination by NUDT proteins inactivation of Cyclin B:Cdk1 complex High Attn TCGA-78-7153 Survival Month: 119.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='42 LowAttnFigure 13: Inspecting and interpreting PONET on TCGA-LUSC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Sankey diagram visualization of the inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Figure 14: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-LUSC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 21 Gene Pathways DLG1 Calmodulin induced events TCF transactivating complex Cell-extracellular matrix interactions UBA52 CD28 dependent PI3K/Akt signaling Pentose phosphate pathway disease Neurotransmitterclearance PPP2R5E PI5P,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=" PP2A and IER3 Regulate PI3K/AKT Signaling Signaling by NTRK3 (TRKC) rRNA processing in the mitochondrion PSMC5 NrCAM interactions Interferon gamma signaling TCR signaling RAC1 Constitutive Signaling by NOTCH1 Glutathione conjugation Hedgehog 'on' state outcome CREB1 MAP2K and MAPK activation Toll Like Receptor 10 (TLR10) Cascade Base-Excision Repair," metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' AP Site Formation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='ADAM17 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Negative regulation of MAPK pathway ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Defects in biotin (Btn) metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content="Hedgehog 'off state " metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PAK2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Cleavage of the damaged purine ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='SUMO E3 ligases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of Hypoxia-inducible Factor (HIF) by oxygen ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PSMC2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='AXIN missense mutants destabilize the destruction complex ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RAF-independent MAPK1/3 activation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by NOTCH4 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NCOA1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='SHC-related events triggered by IGF1R ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Golgi-to-ER retrograde transport ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Nucleobase biosynthesis ' metadata={'source': 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+page_content='Calmodulin induced events ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PI3K/Akt signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='regulate PI3K/AKT signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NrCAM interactions ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Survival Month: 23.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='52 High Attn TCGA-33-4538 Survival Month: 97.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='86 Low AttnFigure 15: Inspecting and interpreting PONET on TCGA-PAAD.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Sankey diagram visualization of the inner layers of PONET shows the estimated relative importance of different nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes in the first layer represent genes;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' the next layers represent pathways;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' and the final layer represents the model outcome.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Different layers are linked by weights.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Nodes with darker colors are more important, while transparent nodes represent the residual importance of undisplayed nodes in each layer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' Figure 16: Co-attention visualization of top 4 ranked pathways in two cases of TCGA-PAAD.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' 22 Gene Pathways PTGES3 SMAD4 MH2 Domain Mutants in Cancer Interleukin-6 family signaling Mitotic G1-G1/S phases C1QC SMAD2/3 MH2Domain Mutants in Cancer Signaling by FGFR3 Class I MHC pathway PSMD3 Synthesis of Prostaglandins and Thromboxanes AXIN mutants destabilize the destruction complex,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content=' activating WNT signalir ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Triglyceride metabolism ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='CABIN1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation by c-FLIP ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Influenza Viral RNA Transcription and Replication ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RIPK1-mediated regulated necrosis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='NRAS ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='C1QB ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Formation of Senescence-Associated Heterochromatin Foci (SAHF) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Thyroxine biosynthesis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Reversal of alkylation damage by DNA dioxygenases ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='outcome ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='EIF3E ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Coenzyme A biosynthesis ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Fusion and Uncoating of the Infuenza Virion ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PIP3 activates AKT signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MGAT4B ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='PPCS ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RUNX3 regulates BCL2L11 (BIM) transcription ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='EPH-Ephrin signaling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Metabolism of cofactors ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='YWHAG ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='FGFR1 mutant receptor activation ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Signaling by NOTCH1 HD Domain Mutants in Cancer ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Platelet Aggregation (Plug Formation) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='MET activates RAP1 and RAC1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Resolution of AP sites via the single-nucleotide replacement pathway ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='GPCR downstream signalling ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Regulation of innate immune responses to cytosolic DNA ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='RNA Polymerase I Promoter Clearance ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residual ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='residualTCGA-2J-AABO ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Formation of senescence ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='Survival Month: 14.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='45 Regulation by c-FLIP associated heterochromatin foci Coenzyme A biosynthesis MET activates RAP1 and RAC1 High Attn TCGA-3A-A9IH Survival Month: 33.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} +page_content='54 Low Attn' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/29E0T4oBgHgl3EQfeAAf/content/2301.02383v1.pdf'} diff --git a/39FIT4oBgHgl3EQf6SuL/content/tmp_files/2301.11393v1.pdf.txt b/39FIT4oBgHgl3EQf6SuL/content/tmp_files/2301.11393v1.pdf.txt new file mode 100644 index 0000000000000000000000000000000000000000..ded2654be169e738651887b5096ec828d8d43029 --- /dev/null +++ b/39FIT4oBgHgl3EQf6SuL/content/tmp_files/2301.11393v1.pdf.txt @@ -0,0 +1,2080 @@ +The S-diagnostic—an a posteriori error +assessment for single-reference coupled-cluster +methods +Fabian M. Faulstich,∗,† H˚akon E. Kristiansen,‡ Mihaly A. Csirik,‡ Simen Kvaal,‡ +Thomas Bondo Pedersen,‡ and Andre Laestadius¶,‡ +†Department of Mathematics, University of California, Berkeley +‡Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University +of Oslo, Norway +¶Department of Computer Science, Oslo Metropolitan University, Norway +E-mail: f.m.faulstich@berkeley.edu +Abstract +We propose a novel a posteriori error assessment for the single-reference coupled- +cluster (SRCC) method called the S-diagnostic. We provide a derivation of the S- +diagnostic that is rooted in the mathematical analysis of different SRCC variants. We +numerically scrutinized the S-diagnostic, testing its performance for (1) geometry op- +timizations, (2) electronic correlation simulations of systems with varying numerical +difficulty, and (3) the square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, and +[Cu(H2O)4]2+. Throughout the numerical investigations, the S-diagnostic is compared +to other SRCC diagnostic procedures, that is, the T1, D1, and D2 diagnostics as well as +different indices of multi-determinantal and multi-reference character in coupled-cluster +theory. Our numerical investigations show that the S-diagnostic outperforms the T1, +1 +arXiv:2301.11393v1 [physics.chem-ph] 26 Jan 2023 + +D1, and D2 diagnostics and is comparable to the indices of multi-determinantal and +multi-reference character in coupled-cluster theory in their individual fields of applica- +bility. The experiments investigating the performance of the S-diagnostic for geometry +optimizations using SRCC reveal that the S-diagnostic correlates well with different +error measures at a high level of statistical relevance. The experiments investigating +the performance of the S-diagnostic for electronic correlation simulations show that the +S-diagnostic correctly predicts strong multi-reference regimes. The S-diagnostic more- +over correctly detects the successful SRCC computations for [CuCl4]2−, [Cu(NH3)4]2+, +and [Cu(H2O)4]2+, which have been known to be misdiagnosed by T1 and D1 diagnos- +tics in the past. This shows that the S-diagnostic is a promising candidate for an a +posteriori diagnostic for SRCC calculations. +1 +Introduction +While the underlying mathematical theory of the quantum many-body problem is, on a fun- +damental level, well described, the governing equation, namely, the many-body Schr¨odinger +equation, remains numerically intractable for a large number of particles. In fact, the many- +body Schr¨odinger equation poses one of today’s hardest numerical challenges, mainly due +to the exponential growth in computational complexity with the number of electrons. Over +the past century, numerous numerical approximation techniques of various levels of cost +and accuracy have been developed in order to overcome this curse of dimensionality. Ar- +guably, the most successful approaches are based on coupled-cluster (CC) theory1, which +defines a cost-efficient hierarchy of increasingly accurate methods, including the so-called gold +standard of quantum chemistry—the coupled-cluster singles-and-doubles with perturbative +triples (CCSD(T))2 model. +Despite the great success of CC theory, its reliability is not yet fully quantifiable. More +precisely, aside from a few heuristically derived results, there exists no universally reliable +diagnostic that indicates if the computational result is to be trusted. +This shortcoming +2 + +is most apparent in the regime of transition metal compounds and molecular bond break- +ing/making processes, systems dominated by strong nondynamic electron-correlation effects, +where several methods based on CC theory tend to fail along with all other numerically +tractable approaches. +Therefore, a posteriori error diagnostics are urgently needed in the field. +Until very +recently, the diagnostic approaches available were limited to the so-called T1 (also called +τ1)3,4, D1, and D2 diagnostic5,6. Despite clear numerical evidence that diagnostics based +on the single excitation amplitudes, such as the T1 and D1 diagnostics, do not provide +reliable indicators7, they are commonly used due to the lack of alternatives. +Recently, +an alternative set of multi-reference indices was introduced which provided a number of a +posteriori diagnostic tools8 christened the indices of multi-determinantal and multi-reference +character in coupled-cluster theory. These tools are highly descriptive and able to determine +different molecular scenarios in which CC theory may fail. +We provide an alternative error diagnostic that is based on assumptions employed in the +mathematical analysis CC theory. More precisely, our diagnostic is derived from the math- +ematical analysis of CC theory that provides sufficient conditions for a locally unique and +quasi-optimal solution to the CC working equations. Central to our derivation is the strong +monotonicity property, as introduced by Schneider9, which is eponymous for our S-diagnostic. +Compared to the recently suggested nine indices that describe the multi-determinantal and +multi-reference character in coupled-cluster theory8, the S-diagnostic is a diagnostic tech- +nique that can be applied to multi-determinantal and multi-reference scenarios alike. We +complement our theoretical derivation of the S-diagnostic with numerical simulations scruti- +nizing its validity for different geometry optimizations, and electronic correlation computa- +tions for systems of varying numerical difficulty for single reference coupled-cluster methods. +The rest of the article is structured as follows. We begin with a brief review of CC theory, +followed by a short summary of the mathematical results derived in previous works which +lay the mathematical foundation for the proposed S-diagnostics. Then, we derive the main +3 + +result, i.e., the S-diagnostic which is subsequently numerically scrutinized. +2 +Theory +2.1 +Brief overview of coupled-cluster theory +In CC theory the wave function is parametrized by the exponential |ψ⟩ = e ˆT|φ0⟩. Here, |φ0⟩ +is the reference determinant defining the occupied spin orbitals, and ˆT = � +µ tµ ˆXµ = � +k ˆTk +is a cluster operator, where ˆTk excites k = 1, . . . , N electrons—k is the excitation rank of a +given ˆTk—from the occupied spin orbitals into the virtual spin-orbitals. All possible excited +determinants can be expressed as |µ⟩ = ˆXµ|φ0⟩ for some multi-index µ labeling occupied and +virtual spin-orbitals. The governing equations determining amplitudes (tµ), and therewith +also the CC energy ECC(t), are given by fCC(t) = 0, where +� +� +� +� +� +ECC(t) = ⟨φ0|e− ˆT ˆHe +ˆT|φ0⟩ +(fCC(t))µ = ⟨µ|e− ˆT ˆHe +ˆT|φ0⟩. +(1) +More compactly, Eq. (1) can be expressed using the CC Lagrangian10,11 +L(t, z) = ECC(t) + +� +µ +zµ(fCC(t))µ = ⟨φ0|(ˆI + ˆZ†)e− ˆT ˆHe +ˆT|φ0⟩, +(2) +where (zµ) are the Lagrange multipliers which are the dual variables corresponding to (tµ). In +the extended CC theory12–14 (ECC), which will be used to introduce additional information +to our S-diagnostic, the Lagrangian is replaced with the more general energy expression +EECC(t, λ) = ⟨φ0|e +ˆΛ†e− ˆT ˆHe +ˆT|φ0⟩. +(3) +4 + +Consequently, through the substitution eˆΛ = ˆI + ˆZ, we have EECC(t, λ) = L(t, z). +The +stationarity condition can then be formulated as FECC = 0, where +FECC = (∂ΛEECC, ∂TEECC) +(4) +is the so-called flipped gradient15. The partial derivatives with respect to the amplitudes in +Eq. (4) are given by +∂λµEECC = ⟨µ|e +ˆΛ†e− ˆT ˆHe +ˆT|φ0⟩, +∂tµEECC = ⟨φ0|e +ˆΛ†[e− ˆT ˆHe +ˆT, ˆXµ]|φ0⟩. +(5) +Since the number of determinants, and therewith the size of the system’s governing +equations, suffer in general from the curse of dimensionality (i.e., it grows exponentially fast +with the number of electrons), restrictions are necessary to ensure the system’s numerical +tractability. In practice this is achieved by restricting excitations to excited determinants +that correspond to a preselected index set—this is referred to as truncation. Such excitation +hierarchies are commonly denoted as singles (S), doubles (D), etc. We emphasize that the +CC working equations, as a system of polynomial equations, typically have a large number +of roots, and the corresponding landscape of said roots is highly non-trivial16. Consequently, +different limit processes have to be considered separately and carefully studied. More pre- +cisely, the convergence of the CC roots with respect to the basis set discretization, i.e., +convergence towards the complete basis set limit, is a fundamentally different limit process +from the convergence with respect to the coupled-cluster truncations. Hence, it is important +to note that the convergence of the numerical root finding procedure for the truncated stan- +dard (or extended) CC equations does not by itself imply convergence of the roots to the +corresponding exact roots. In other words, whether the discrete roots converge to the exact +roots cannot simply be assumed to be true in general. +Before proceeding further with the derivation of the S-diagnostic, we wish to provide +the reader with a more precise description of the underlying mathematical conventions in +5 + +coupled-cluster theory. We first emphasize the distinction between the cluster amplitudes +and the corresponding wave function. Although related, these objects live in different spaces +which we shall elaborate on subsequently. First, the wave function object |ψ⟩ = e ˆT|φ0⟩ lives +in the N-particle Hilbert space of square-integrable functions, i.e., L2 = {ψ : +� +|ψ|2 < +∞}, +with finite kinetic energy.1 We remind the reader of the notation for the L2-inner product +⟨ψ′|ψ⟩, and its induced norm ∥ψ∥2 +L2 = ⟨ψ|ψ⟩. +Second, operators that act on the wave +function, e.g., the Hamiltonian or excitation operators. In this case, we can introduce a +norm expression for the operator inherited from the function space it is defined on. For +example, let O be an operator defined on L2 then we define the L2 operator norm +∥O∥L2 = sup{∥OΨ∥L2 : ∥Ψ∥L2 = 1 and Ψ ∈ L2}. +(6) +Note that this reduces to the conventional matrix norm in the finite dimensional case. Third, +the CC amplitudes (tµ) live in the Hilbert space of finite square summable sequences denoted +the ℓ2-space. This space is equipped with the ℓ2-inner product17, i.e., let x = (xµ) and +y = (yµ) be two finite sequences, the ℓ2-inner product is defined as +⟨x, y⟩ℓ2 = +� +µ +xµyµ, +which induces the norm ∥x∥2 +ℓ2 = ⟨x, x⟩ℓ2. Henceforth, we shall denote the full amplitude space +by V, and the truncated amplitude space, e.g., the space only containing single and double +amplitudes, by V(d); note that we use “d” in this section to distinguish objects that are subject +to imposed truncations. We moreover follow the mathematically convenient convention that +1Mathematically, assuming finite kinetic energy is important for the well-posedness of the Schr¨odinger +equation. In a “weak” formulation this is given by (here for simplicity leaving out spin degrees of freedom) +� +R3N |∇ψ(r1, . . . , rN)|2dr1 . . . drN < +∞. +In the mathematical literature this can be summarized by ψ ∈ H1 (Sobolev space)17. This extra constraint +of finite kinetic energy is moreover important for the “continuous” (i.e., infinite dimensional) formulation of +coupled-cluster18. +6 + +uses a generic constant C, independent of the main variables under consideration, for the +different estimations performed subsequently. +Having laid down the basic definitions, we now recall a result that gives insight into the +root convergence of CC theory which can be established using a basic existence result of +nonlinear analysis9,15,18–20. To state this result, we need two more definitions. +First, local strong monotonicity. Let t, t′, t∗ be cluster amplitudes with ˆT, ˆT ′ and ˆT∗ +denoting the corresponding cluster operators. Set +∆(t, t′) = ⟨fCC(t) − fCC(t′), t − t′⟩ℓ2, +(7) +and furthermore ∆ ˆT = ˆT − ˆT ′. Then the CC function fCC is said to be locally strongly +monotone at t∗ if for some r > 0, γ > 0 and all t, t′ within the distance r of t∗ +∆(t, t′) ≥ γ∥t − t′∥2 +ℓ2. +(8) +Second, local Lipschitz continuity. The function fCC is said to be locally Lipschitz con- +tinuous at t∗ with Lipschitz constant L > 0 if +∥fCC(t) − fCC(t′)∥ℓ2 ≤ L∥t − t′∥ℓ2 +(9) +for any t, t′ in a ball around t∗. Note that in the finite-dimensional case, fCC is indeed locally +Lipschitz since it is continuously differentiable. +With these definitions at hand, we can recall the following result9,19: +Let fCC(t∗) = 0 and assume that fCC is locally strongly monotone with constant γ > 0 at +t∗. Furthermore, let V(d) ⊂ V be a truncated amplitude space with Pd being the orthogonal +projector onto V(d) and fd a discretization of fCC, i.e., fd = PdfCC. Then, the following +holds: +1. t∗ is locally unique, i.e., |ψ∗⟩ = eT∗|φ0⟩ is the only solution within a sufficiently small +7 + +ball. +2. There exists a sufficiently large d0, such that for any d > d0, there exists t(d) +∗ +∈ V(d) +such that fd(t(d) +∗ ) = 0. This root is unique in a ball centered at t∗ (for some radius r) +and we have quasi-optimality of the discrete solution t(d) +∗ +i.e. +∥t(d) +∗ +− t∗∥ℓ2 ≤ L +γ dist(t∗, V(d)), +(10) +where dist(v, V(d)) is the distance from v to V(d) measured using the norm of V, and L +is the Lipschitz constant of fCC at t∗. +3. For d > d0, the discrete equations fd(t(d) +∗ ) = 0 have locally unique solutions, and in +addition to the error estimate (10), we have the quadratic energy error bound +|ECC(t(d) +∗ ) − E0| ≤ C1∥t∗ − t(d) +∗ ∥2 +ℓ2 + C2∥t∗ − t(d) +∗ ∥ℓ2∥z∗ − z(d) +∗ ∥ℓ2, +(11) +where E0 is the ground state energy and z∗ and z(d) +∗ +are the Lagrange multiplier of the +exact and truncated equations, respectively. The constants C1, C2 > 0 arise in general +from particular continuity considerations18,19 which shall not be further characterized +here. +We emphasize that the result in Ref. 18 is more elaborate since it is concerned with an +infinite dimensional amplitude space. Here, we implicitly assume a finite-dimensional am- +plitude space which allows us to present the result in the simpler but equivalent ℓ2-topology. +This result ensures that the CC method is convergent as the truncated cluster amplitude +space V(d) approaches the untruncated limit and that the energy converges quadratically. +Note also that the above results hold for conventional single-reference CC theory but can be +formulated for the extended CC theory as well with some slight modifications (see Ref. 15). +8 + +2.2 +Strong Monotonicity Property +The local strong monotonicity at a root of the CC equations is the mathematical basis of what +we deem as a reliable solution obtained from a truncated CC calculation since this implies +a unique solution of fd = 0 for sufficiently good approximate V(d) as well as a quadratic +convergence in the energy. Moreover, it follows that the Jacobian of both fCC and fd are +non-degenerate at such a solution. In order to derive the S-diagnostic, we start with a brief +review of the proof presented in the literature15,18,20 while making some slight improvements. +We subsequently establish Eq. (8) up to second order in ∥t−t′∥ℓ2 under certain assumptions. +To that end, we define +∆2(t∗; t, t′) = ⟨∆ ˆTφ0|e− ˆT∗( ˆH − E0)e +ˆT∗|∆ ˆTφ0⟩. +(12) +Now, suppose that fCC(t∗) = 0, then by Taylor expansion we find +∆(t, t′) = ∆2(t∗; t, t′) + O((∆t)3). +(13) +For the proof, we refer the reader to Ref. 19. We emphasize that the core idea of the proof +is a Taylor expansion of e ˆT and e ˆT ′ around ˆT∗, which does not require t∗ itself to be small, +rather, the assumption is that we are within a certain neighborhood of t∗. +By Eq. (13), if ∆2(t∗; t, t′) ≥ γ′∥t − t′∥2 +ℓ2 with γ′ > 0 for t, t′ within distance r′ from t∗, +then it is possible to find r > 0 such that Eq. (8) is true for γ ∈ (0, γ′] for t, t′ at distance at +most r ≤ r′) from t∗. Consequently, we wish to establish +∆2(t∗; t, t′) ≥ γ′∥t − t′∥2 +ℓ2 +(14) +for some γ′ = γ′(t∗) > 0. +We subsequently assume that the ground state of ˆH exists and is non-degenerate, and +that ˆH admits a spectral gap γ∗ > 0 between the ground-state energy E0 and the rest of the +9 + +spectrum of ˆH, i.e., +γ∗ = inf +� +⟨ψ| ˆH − E0|ψ⟩ +⟨ψ|ψ⟩ +: |ψ⟩ ⊥ |ψ∗⟩ +� +> 0. +(15) +Moreover, we assume that the reference |φ0⟩ is such that it is not orthogonal to the ground- +state wave function. +With these assumptions, we can establish an improved version of +Lemma 11 in Ref. 15 and Lemma 3.5 in Ref. 19: If t∗ solves fCC(t∗) = 0 then for |ψ⟩ ⊥ |φ0⟩ +⟨ψ| ˆH − E0|ψ⟩ ≥ γeff +∗ ∥ψ∥2 +L2, +(16) +where +γeff +∗ += +γ∗ +∥eT∗φ0∥2 +L2 +. +(17) +For the sake of clarity, we here display the used L2-norm. Equation 16 can be obtained as +follows: Let P∗ be the projection onto the solution |ψ∗⟩, then +⟨ψ|( ˆH − E0)ψ⟩ = ⟨ψ − P∗(ψ)| ˆH − E0|ψ − P∗(ψ)⟩ +≥ γ∗∥ψ − P∗(ψ)∥2 +L2 += ∥ψ∥2 +L2 − 2Re⟨ψ|P∗(ψ)⟩ + ∥P∗(ψ)∥2 +L2 += ∥ψ∥2 +L2 − |⟨ψ|ψ∗⟩|2 +∥ψ∗∥2 +L2 += ∥ψ∥2 +L2 − |⟨ψ|(eT∗ − I)φ0⟩|2 +∥ψ∗∥2 +L2 +. +(18) +We next note that +|⟨ψ|(eT∗ − I)φ0⟩|2 +∥ψ∗∥2 +L2 +≤ ∥ψ∥2 +L2 ∥(eT∗ − I)φ0∥2 +L2 +∥ψ∗∥2 +L2 += ∥ψ∥2 +L2 +� +1 − +1 +∥ψ∗∥2 +L2 +� +, +which inserted in Eq. (18) yields the desired result. +10 + +With the inequality (16) at hand, we can establish the inequality +∆2(t∗; t, t′) = ⟨∆ ˆTφ0|e− ˆT∗( ˆH − E0)e +ˆT∗|∆ ˆTφ0⟩ +≥ γeff +∗ ∥∆ ˆTφ0∥2 +L2 − CGCC(T∗)∥∆ ˆTφ0∥2 +H1, +(19) +where C is a constant that depends on the Hamiltonian ˆH and +GCC(T∗) = ∥e +ˆT∗ − I∥L2 + ∥e− ˆT † +∗ − I∥L2∥e +ˆT∗∥L2. +(20) +Equation (19) follows from the definition of ∆2 and that +∆2 = ⟨∆ ˆTφ0| ˆH − E0|∆ ˆTφ0⟩ + ⟨∆ ˆTφ0| ˆH − E0|(e +ˆT∗ − I)∆ ˆTφ0⟩ ++ ⟨(e− ˆT † +∗ − I)∆ ˆTφ0| ˆH − E0|e +ˆT∗∆ ˆTφ0⟩, +then, using that ˆH is a bounded operator in the energy norm and the estimate in Eq. (16), +we obtain the desired result in Eq. (19). +3 +The S-Diagnostic +Given the reformulation of the strong monotonicity property in Eq. (19), we consider a +computation to be successful if the results fulfill Eq. (19). In order to derive an a posterioi +diagnostic, we reformulate this inequality in a way that yields a function that indicates +a reliable computation. To ensure the tractability of the said function we introduce the +following approximations, which will yield diagnostic functions of different flavors, later +referred to as S1, S2, and S3, respectively. +11 + +Approximation (i) +A first-order Taylor approximation of e ˆT∗ and the trivial operator +norm inequality 2 yields +∥e +ˆT∗φ0∥2 +L2 ≈ 1 + ∥ ˆT∗∥2 +L2. +(21) +Approximation (ii) +For GCC we use (i) and make the approximation (linearization) +GCC(T) ≈ 2∥ ˆT∥L2. +(22) +Approximation (iii) +As outlined in Ref. 20, we can moreover estimate +(1 + ∥ ˆZ∗∥2 +L2)1/2 ≈ (1 + ∥ ˆT∗∥2 +L2)−1/2. +(23) +This approximation follows by equating the bra and ket wave functions (in the bivariational +formulation) e− ˆT † +∗(ˆI + ˆZ∗)|φ0⟩ = ∥e ˆT∗φ0∥−2 +L2 e ˆT∗|φ0⟩ with eˆΛ∗ = ˆI + ˆZ∗ and approximating +e− ˆT † +∗(ˆI + ˆZ∗)|φ0⟩ ≈ (ˆI + ˆZ∗)|φ0⟩. +(24) +With these approximations at hand, we can derive three variants of the S-diagnostic that +we shall investigate subsequently. +3.1 +The S1-diagnostic +Starting from Eq. (19), we first note that we are considering the finite-dimensional case, and +therefore there exists a constant C > 0 such that +∆2(t∗; t, t′) ≥ +� +γeff +∗ − CGCC( ˆT∗) +� +∥∆ ˆTφ0∥2 +L2 +(25) +2 +∥ ˆT∗φ0∥L2 ≤ ∥ ˆT∗∥L2∥φ0∥L2 = ∥ ˆT∗∥L2 +12 + +holds. Next, we employ Approximation (ii) in the definition of GCC( ˆT∗), and combine Ap- +proximation (i) with the definition of γeff +∗ +in Eq. (17), i.e., +γeff +∗ +≈ +γ∗ +1 + ∥ ˆT∗∥2 +L2 +. +(26) +This yields +γeff +∗ − CGCC( ˆT∗) ≈ +γ∗ +1 + ∥ ˆT∗∥2 +L2 +− 2C∥ ˆT∗∥L2. +(27) +Requiring that this expression is positive, we obtain the success condition +1 +2 > C +γ∗ +(1 + ∥ ˆT∗∥2 +L2)∥ ˆT∗∥L2. +(28) +3.2 +The S2-diagnostic +By applying Approximation (iii) to Eq. (28), we obtain a success condition that involves the +Lagrange multipliers, namely, +1 +2 > C +γ∗ +∥ ˆT∗∥2 +L2 +(1 + ∥ ˆZ∗∥2 +L2) +. +(29) +3.3 +The S3-diagnostic +To obtain a diagnostic that includes the Lagrangian multipliers without making use of Ap- +proximation (iii), we shall follow the argument on strong monotonicity of the extended CC +function FECC defined above. Note that although we use the extended CC formalism in this +section (i.e., where the Lagrange multipliers are treated as a second set of cluster amplitudes), +the derived diagnostic is for the conventional single reference CC method. Subsequently, we +assume that truncations of ˆT and ˆΛ are at the same rank, i.e., the truncated scheme follows +as described above for V(d) but takes the double form V(d) × V(d) and with Pd being the +orthogonal projector onto Vd × Vd. Note that this aligns with practical implementations of +the CC Lagrangian. For brevity, let ˆU = ( ˆT, ˆΛ), ˆU∗ = ( ˆT∗, ˆΛ∗) and ˆU (d) +∗ += ( ˆT (d) +∗ , ˆΛ(d) +∗ ) and +furthermore, set Fd to be the Galerkin discretization of FECC, i.e., Fd( ˆU (d)) = PdFECC( ˆU (d)). +13 + +In Ref. 15 strong monotonicity of FECC was established under certain assumptions, and +recently generalized to a class of extended CC theories21. We, therefore, refer the reader +to these references for the full proof, here we shall only address those parts relevant to our +diagnostics. +Similarly to the CC case, local strong monotonicity of FECC holds if +∆ECC := ⟨FECC(u) − FECC(u′), u − u′⟩ ≥ γ∥u − u′∥2 +(30) +for some positive constant γ. Note that we here extended the notation such that u carries +both the primal-, and dual variables. Furthermore, we let ∆ECC up to second order in ∥u−u′∥ +be denoted ∆ECC +2 +and similarly to Eq. (19) we have +∆ECC +2 +(u∗; u, u′) ≥ γeff +∗ ∥∆ ˆUφ0∥2 +L2 − CGECC( ˆU∗)∥∆ ˆUφ0∥2 +H1, +(31) +where +GECC( ˆU) = GECC( ˆT, ˆΛ) += ∥e− ˆT †e +ˆΛ∥L2∥e +ˆT − I∥L2 + ∥e− ˆT †e +ˆΛ − I∥L2 + K∥φ0∥H1∥e− ˆT †∥L2∥e +ˆT∥L2∥e +ˆΛ − I∥L2. +for some positive constant K +Starting from Eq. (31), we note again that since we are considering finite-dimensional +Hilbert spaces, there exists a constant C > 0 such that +∆ECC +2 +(u∗; u, u′) ≥ +� +γeff +∗ − CGECC( ˆU∗) +� +∥∆ ˆUφ0∥2 +L2. +(32) +We next employ a variation of Approximation (iii): For GECC we make the substitution +eˆΛ = ˆI + ˆZ and approximate with a low-order Taylor expansion +˜GECC( ˆT, ˆZ) := GECC( ˆT, ˆΛ( ˆZ)) ≈ C(∥ ˆT∥L2 + ∥ ˆZ∥L2). +(33) +14 + +Hence, we arrive at the approximation (and we remind the reader that C is used as a generic +constant) +γeff +∗ − CGECC( ˆU∗) ≈ +γ∗ +1 + ∥ ˆT∗∥2 +L2 +− C(∥ ˆT∗∥L2 + ∥ ˆZ∗∥L2). +(34) +Requiring that this expression is positive, we find the condition +1 > C +γ∗ +� +(1 + ∥ ˆT∗∥2 +L2)(∥ ˆT∗∥L2 + ∥ ˆZ∗∥L2) +� +≈ C +γ∗ +� +(1 + ∥ ˆT∗∥2 +L2)∥ ˆT∗∥L2 + +∥ ˆZ∗∥L2 +1 + ∥ ˆZ∗∥L2 +� +. (35) +3.4 +Approximation of operator norms using singular values +The above-derived success conditions Eqs. (28), (29) and (35) can be directly implemented, +however, the quantities involved will depend on the system size. This can be illustrated +by simply placing copies of a molecular system at a distance such that they are at least +numerically non-interacting. In that case, the reliability of the overall CC calculation is +determined by the CC calculations of a single copy, yet, the operator norm of the cluster +operator ∥ ˆT∥L2 will scale with the system’s size. +To remedy this serious difficulty, we consider an alternative interpretation of the clus- +ter operators22: The CCSD method yields a set of single amplitudes (ta +i ) forming a ma- +trix in Rnocc×nvirt and a set of double amplitudes (tab +ij ) forming a fourth-order tensor in +Rnocc×nocc×nvirt×nvirt. As outlined in Ref. 22, in order to capture the pair correlation we re- +shape the fourth-order tensor that describes the double amplitudes as a matrix in Rn2 +occ×n2 +virt, +an operation that is also known as “matricization”. In order to include pair correlations +captured by the single amplitudes, we can moreover extend (tab +ij ) to also include products of +single amplitudes which yields MT ∈ Rn2 +occ×n2 +virt with matrix elements +[MT]ij,ab = tab +ij + (ta +i tb +j − tb +ita +j). +(36) +15 + +The singular value decomposition then yields +MT = UTΣTV ⊤ +T , +(37) +where UT, VT are real orthogonal matrix and ΣT is diagonal. We will subsequently use the +spectral norm, i.e., the largest singular value, here denoted as σ(MT) to approximate the +operator norm, i.e., +∥ ˆT∥L2 ≈ σ(MT) =: σ(t) +(38) +and similarly for the dual variable z. Incorporating this into the success conditions Eqs. (28), +(29) and (35) yields the S-diagnostic functions used in this article +S1(t) := 1 +γ∗ +(1 + σ(t)2)σ(t), +(39a) +S2(t, z) := 1 +γ∗ +σ(t) +1 + σ(z)2, +(39b) +S3(t, z) := 1 +γ∗ +� +(1 + σ(t)2)σ(t) + +σ(z) +1 + σ(z)2 +� +. +(39c) +For computed cluster amplitudes (t) and Lagrange multipliers (z), the above functions +will yield an S-diagnostic value. +In the following numerical investigations, we will first +investigate the statistical correlation between the computed S-diagnostic value and different +measures of error. Second, we will investigate a quantitative bound for the S-diagnostic value +beyond which the computations may not be reliable and further benchmark computations +with more profound error classifications are advised. +4 +Numerical simulations +In this section, we numerically scrutinize the proposed S-diagnostic procedures derived in +the previous sections. All simulations are performed using the Python-based Simulations +of Chemistry Framework (PySCF)23–25. +First, we perform geometry optimizations on a +16 + +medium-sized set of molecules comprising all molecules that were investigated in Refs. 3,5,6 +to test the T1, D1, and D2 diagnostic, respectively. With this data at hand, we can propose +an initial set of values, beyond which our diagnostic suggests interpreting the computational +results with caution and if possible benchmarking with additional methods that allow for +a more profound error classification. Second, we target small model systems whose multi- +reference character can be controlled by simple geometric changes. Third, we numerically +investigate transition metal complexes that have been shown to be misdiagnosed by the T1 +and D1 diagnostics7. +4.1 +Correlation in Geometry Optimization +In order to quantify the correlation between the S-diagnostics and the error of the CC +method, we numerically investigate the Spearman correlation26 between the error of in sil- +ico geometry optimizations and the corresponding value of the S-diagnostics. We perform +geometry optimizations for 34 small to medium-sized molecules that were previously studied +in relation to CC error classifications3,5,6, see Table 1. +Table 1: Molecules which are used in the geometry optimization presented here. +H2N2 +HOF +C2H2 +ClOH +H2S +O3 +FNO +ClNO +C2 +C3 +CO +HNO +HNC +HOF +Cl2O +P2 +N2H2 +HCN +CH2NH +N2 +C2H4 +F2 +HOCl +Cl2 +HF +CH4 +H2O +SiH4 +NH3 +HCl +CO2 +BeO +H2CO +CH2 +The calculations are performed using the CC method with singles and doubles (CCSD) +using the cc-pVDZ basis set provided by PySCF; the geometry optimization is performed +using the interface to PyBerny27. The numerically obtained results are compared with exper- +imentally measured geometries of the considered systems in their gas phases extracted from +the Computational Chemistry Comparison and Benchmark Data Base (CCCBDB)28. Since +the computed atomic positions cannot be directly compared, we introduce the bond-length +matrix that describes the pairwise distance between the atoms in the molecular compound. +17 + +This bond-length matrix can be directly compared with the bond-length matrix provided by +CCCBDB if we label and order the atoms of the corresponding system accordingly. We in- +vestigate the correlation between the S-diagnostics and three possible error characterizations +obtained from the absolute difference of the bond-length matrices denoted D(diff): +i) The maximal absolute error (∆r(max) +abs +): the maximal absolute deviation of the numeri- +cally obtained bond-length matrix to the experimentally obtained bond-length matrix, +i.e., +∆r(max) +abs += max +i,j D(diff) +ij +ii) The averaged absolute error (∆r(ave) +abs ): the averaged absolute deviation of the numeri- +cally obtained bond-length matrix to the experimentally obtained bond-length matrix, +i.e., +∆r(ave) +abs += +� +i,j D(diff) +i,j +Natoms +iii) The averaged relative error (∆r(ave) +rel +): the averaged relative deviation of the numerically +obtained bond-length matrix to the experimentally obtained bond-length matrix, i.e., +∆r(ave) +rel += +� +i,j D(diff) +i,j +Natoms maxi,j D(diff) +ij +Computing the Spearman correlation between the errors listed above and the proposed S- +diagnostics, we find that all suggested S-diagnostics correlate well with all the error measures +suggested, i.e., we consistently find correlations of rsp > 0.5 with p < 0.0008, see Table 2. The +largest correlation is observed between the maximal absolute error (∆r(max) +abs +) and S2 and S3 +where we find a correlation of rsp = 0.58476 with p = 0.00018. For comparison, we compute +the Spearman correlation for the previously suggested T1, D1, and D2 diagnostic in Table 2. +We find that T1, and D1, are uncorrelated to all the errors that we investigate here, i.e., +rsp < 0.3 with p > 0.1. The D2 diagnostic6 shows a correlation with the averaged absolute +error (∆r(ave) +abs ) and the averaged relative error (∆r(ave) +rel +), where we find a correlation of rsp = +18 + +0.36886 with p = 0.026847 and rsp = 0.35496 with p = 0.033646, respectively. We moreover +compare the S-diagnostics with the recently suggested indices of multi-determinantal and +multi-reference character in CC theory8. We find that similar to the S-diagnostics, the EEN +index8 correlates well with the maximal absolute error (∆r(max) +abs +); we observe a correlation +of rsp = 0.53572 with p = 0.000759. +Directly comparing the Spearman correlation of the S-diagnostics with the T1, D1, and +D2 diagnostic, we see that the S-diagnostics have a significantly higher correlation than the +heuristically motivated diagnostics T1, D1 and D2 diagnostics while exhibiting a higher level +of stochastic significance. Comparing the Spearman correlation of the S-diagnostics with the +indices of multi-determinantal and multi-reference character in CC theory, we find that the +S-diagnostic and EEN show similar correlation with the maximal absolute error (∆r(max) +abs +) +with a comparable level of stochastic significance. +Table 2: Spearman correlation between the S-diagnostic computed form CCSD amplitudes +and different errors in geometry optimization. The pair-entries show the rank correlation +and the corresponding p-value, i.e., (rsp, p). +∆r(max) +abs +∆r(ave) +abs +∆r(ave) +rel +S1 +(0.57910, 0.000215) +(0.57761, 0.000225) +(0.53668, 0.000740) +S2 +(0.58476, 0.000180) +(0.58584, 0.000174) +(0.54543, 0.000581) +S3 +(0.58476, 0.000180) +(0.58584, 0.000174) +(0.54543, 0.000581) +T1 +(0.03025, 0.863034) +(0.00489, 0.977416) +(0.02265, 0.895674) +D1 +(0.27675, 0.107522) +(-0.00541, 0.975040) +(-0.02034, 0.906294) +D2 +(0.16974, 0.329625) +(0.36886, 0.026847) +(0.35496, 0.033646) +EEN +(0.53572, 0.000759) +(0.42059, 0.010643) +(0.33694, 0.044488) +In order to obtain an approximate trusted region suggested by the S-diagnostics, we +require a descriptive function that maps the value obtained from the S-diagnostic to the +error in geometry. Since the Spearman correlation describes a monotone relation between +the quantities, we may not assume that this relation is linear. Unfortunately, the Spearman +correlation does not indicate the type of relation that connects the two measured quanti- +ties. We, therefore, perform a piecewise linear fit to the data obtained in this simulation, +see Fig. 1. We here allow for four segments which are optimized to reach the best approx- +19 + +imation by means of a piecewise linear and monotone function. We emphasize that larger +numbers of segments yield similar approximations, see Fig. 1b. Performing this piecewise +linear fit, we observe that the function is constant on some segments. Based on the data dis- +tribution, we conclude that this constant behavior is artificial and caused by the test set not +being sufficiently versatile. In particular, no quantitative conclusions can be drawn from the +piecewise linear fit function for values S3 > 1. Therefore, from the geometry optimizations +performed here, we can merely conjecture to raise a concern about the validity of CC calcu- +lations performed for values of the S-diagnostics v(3) +crit ≥ 1. Based on the piecewise linear fit, +S3 = 1 corresponds to an error larger than 0.035 a0. A larger statistical investigation with +a larger variety of molecules and basis set discretizations is delegated to future works. We +emphasize that this first estimation of vcrit is particularly pessimistic since the data set is not +versatile enough to give a precise estimation of vcrit. Indeed, in the subsequently performed +simulations, we show a more refined estimation of vcrit that reveals v(2) +crit = 1.9 and v(3) +crit = 1.8, +for S2, and S3, respectively. +(a) +(b) +Figure 1: +The maximal error in geometry optimization as a function of the S2 value. (a) +The orange line corresponds to a piecewise linear fit to the data using four segments for +the piecewise linear function. (b) Piecewise linear fits to the data with a varying number of +segments. +Aside from CC-based simulations, we can also perform MP2 simulations, and use the +obtained doubles amplitudes to compute the S-diagnostics. +We find that the proposed +20 + +0.150 +4-seg. +0.125 +0.100 +Max. diff. +0.075 +0.050 +0.025 +0.000 +0.5 +1.0 +1.5 +2.0 +S3 value0.150 +3-seg. +0.125 +4-seg. +5-seg. +0.100 +Max. diff. +6-seg. +0.075 +0.050 +0.025 +0.000 +0.5 +1.0 +1.5 +2.0 +S3 valueS-diagnostics correlate similarly well with MP2 based calculations as it does for CCSD, +see Table 3 +Table 3: Spearman correlation between S-diagnostics computed from MP2 doubles ampli- +tudes and different errors in geometry optimization. +∆r(max) +abs +∆r(ave) +abs +∆r(ave) +rel +S1 +(0.55992, 0.000384) +(0.54569, 0.000577) +(0.49781, 0.002006) +S2 +(0.56687, 0.000313) +(0.54801, 0.000541) +(0.49858, 0.001968) +S3 +(0.55992, 0.000384) +(0.54569, 0.000577) +(0.49781, 0.002006) +4.2 +Model Systems +In this section we investigate the use of the proposed S-diagnostics for four model systems +whose multi-reference character can be controlled by simple geometric change: (1) twisting +ethylene, (2) the C2v insertion pathway for BeH2 (Be · · · H2)29, (3) the H4 model (transition +from square to linear geometry)30 (4) the H4 model (symmetrically disturbed on a circle); +the computations are performed in cc-pVTZ basis. +4.2.1 +Twisting ethylene +We begin by numerically investigating the proposed S-diagnostics for ethylene twisted around +the carbon–carbon bond, see Fig. 2. +Θ +H +C +H +H +C +H +H +C +H +C +H +H +Figure 2: Depiction of the ethylene (C2H4) model with twist angle Θ. +At a twist angle of 90°, this system shows a strong multi-reference character. This can +be seen as follows: At the equilibrium geometry, i.e., in a planar geometry, the two carbon +p orbitals are perpendicular to the molecular plane form bonding π and anti-bonding π∗ +orbitals. In this geometry, the ground state doubly occupies the π-orbital. As we twist around +21 + +the carbon–carbon bond, the overlap between the two p orbitals decreases and becomes zero +at 90°. Therefore, at 90° the π and π∗ orbitals become degenerate and the π-bond is broken. +This (quasi) degeneracy can also be observed numerically by computing the HOMO-LUMO +gap as a function of the twist angle, see Fig. 3a. Computing the corresponding ground state +energy as a function of the twist angle, we observe the characteristic energy cusp at exactly +90°, see Fig. 3b. +(a) +(b) +Figure 3: +(a) HOMO-LUMO gap of C2H4 as a function of the twist angle (b) RHF and +RCCSD energies of C2H4 as a function of the twist angle +Due to the quasi degeneracy around 90°, we compare the S-diagnostic with the MRI +index suggested in Ref. 8. We clearly see the indication of the quasi degeneracy in the MRI +index, see Fig. 4b. The S-diagnostic also indicates the problematic region around 90°. By +numerical comparison, we find that a cut-off value of v(2) +crit = 1.9 and v(3) +crit = 1.8 for S2 and +S3, respectively, indicates the same region of quasi degeneracy as the MRI index. +4.2.2 +C2v insertion pathway for BeH2 +Next we shall investigate the C2v insertion pathway for BeH2 (Be · · · H2)29. The model +represents an insertion of the Be atom into the H2 molecule. The transformation coordinate +connects the non-interacting subsystems (Be + H2) with the linear equilibrium state (H-Be- +H), see Fig. 5 +22 + +HOMO-LUMO gap +0.50 +0.45 +0.40 +0.35 +0.30 +0 +1 +2 +3 +Twist angle/ RadianGround state energy +-78.0 +RHF +-78.2 +CCSD +-78.4 +0 +1 +2 +3 +Twist angle/ Radian(a) +(b) +Figure 4: +(a) The proposed S-diagnostics of C2H4 as a function of the twist angle, the +dotted green and red horizontal lines correspond to v(2) +crit = 1.9 and v(3) +crit = 1.8, respectively. +(b) The previously suggested MRI of C2H4 as a function of the twist angle +H +Be +H +H +Be +H +Figure 5: Depiction of the C2v insertion pathway for BeH2. +23 + +3.0 +S1 +S2 +2.5 +S3 +2.0 +1.5 +1.0 +0.5 +0.0 +0.5 +1.0 +1.5 +2.0 +2.5 +3.0 +Twist angle/ Radian1.0 +0.5 +0.0 +-0.5 +MRI +-1.0 +0.0 +0.5 +1.0 +1.5 +2.0 +2.5 +3.0 +Twist angle/ RadianWe here follow the insertion pathway outlined in Ref. 29 and denote the position of +the beryllium atom by X-position, where X-position equal to zero corresponds to the linear +equilibrium state and X-position equal to five corresponds to the non-interacting subsystems. +The transition state of this chemical transformation has a pronounced multi-reference char- +acter. Another distinguishing feature of this model system is a change in the character of the +dominating determinant in the wave function along the potential energy surface. There are +two leading determinants in the wave function, each of which dominates in a certain region +of the potential energy surface while both are quasi-degenerate around the transition-state +geometry. This leads yields to discontinuities as can be seen in Figs. 6a and 6b +(a) +(b) +Figure 6: +(a) HOMO-LUMO gap as a function of the X-position (b) RHF and RCCSD +energies as a function of the X-position. +Due to the quasi-degeneracy that appears along the transition path, we again compare +the proposed S-diagnostics with the MRI index suggested in Ref. 8. We clearly see the +indication of the quasi degeneracy in the MRI index, see Fig. 7b. The region indicated by +MRI< −0.99 corresponds to x ∈ [2.6, 3.05]. The S-diagnostic also indicates a region where +the CC computations are potentially unreliable. It is worth mentioning that choosing the +critical values similar to the previous example, i.e., v(2) +crit = 1.9 and v(3) +crit = 1.8, the predicted +region corresponds to x ∈ [2.5, 4.5] and x ∈ [2.5, 4.25], respectively. In order to reproduce +the same region of quasi-degeneracy as indicated by the MRI index, the critical values have +24 + +Ground state energy +-15.0 +RHF +Hartree +CCSD +-15.2 +一15.4 +Energyl +-15.6 +-15.8 +0 +1 +2 +3 +4 +5 +X-position/ aoHOMO-LUMO gap +0.5 +0.4 +0.3 +0.2 +0 +2 +3 +4 +5 +1 +X-position/ aoto be adjusted to v(2) +crit = 3.8 and v(3) +crit = 3.5, respectively. +(a) +(b) +Figure 7: (a) shows the S-diagnostics, the dotted green, and red horizontal lines correspond +to v(2) +crit = 1.9 and v(3) +crit = 1.8, respectively. (b) shows the previously suggested MRI +4.2.3 +H4 model (transition from square to linear geometry) +Next, we shall investigate the proposed S-diagnostics applied to the H4 model. The H4 +model is a standard transition model that allows steering the quasi-degeneracy using a single +parameter, namely, the transition angle α where α = 0 corresponds to a square geometry +and α = π/2 corresponds to a linear geometry. Following Ref.30, we set a = 2.0 (a.u.), +see Fig. 8. +a +a +a +a +a +α +α +a +a +a +a +Figure 8: Depiction of the H4 model undergoing the transition from a square geometry to +linear geometry model by the angle α. +We see that as the transition angle α tends to zero, the HOMO-LUMO gap closes and +the system shows signs of (quasi-) degeneracy, see Fig. 9a +25 + +So +S +S2 +101 +100 +0 +2 +3 +4 +5 +X-position/ ao1.0 +0.5 +0.0 +-0.5 +MRI +-1.0 +0 +1 +2 +3 +4 +5 +X-position/ ao(a) +(b) +Figure 9: (a) HOMO-LUMO gap of H4 as a function of the transition angle (b) RHF, CCSD +and FCI energies of H4 as a function of the transition angle +Due to the quasi degeneracy near α = 0, we again compare the proposed S-diagnostics +with the MRI index. We clearly see the indication of the quasi degeneracy in the MRI index, +see Fig. 10b. The S-diagnostic also indicates the problematic region near zero transition +angle. +A cut-off value of v(2) +crit = 1.9 and v(3) +crit = 1.8 results in S2 and S3, respectively, +indicating the same region of quasi degeneracy as the MRI index. +(a) +(b) +Figure 10: +(a) The S-diagnostics of H4 as a function of the transition angle, the dotted +green, and red horizontal lines correspond to v(2) +crit = 1.9 and v(3) +crit = 1.8, respectively. (b) The +previously suggested MRI of H4 as a function of the transition angle. +For this small model Hamiltonian, it is moreover feasible to perform computations at the +26 + +HOMO-LUMO gap +0.50 +0.45 +0.40 +0.35 +0.30 +0.0 +0.5 +1.0 +1.5 +Angle/ radianGround state energy +RHF +-2.0 +CCSD +FCI +2.1 +-2.2 +0.0 +0.5 +1.0 +Angle/ radian6 +So +S1 +5 +S2 +4 +3 +2 +1 +0 +0.00 +0.25 +0.50 +0.75 +1.00 +1.25 +1.50 +Angle/ radian1.0 +0.5 +0.0 +-0.5 +MRI +-1.0 +0.00 +0.25 +0.50 0.75 +¥1.00 +1.25 +1.50 +Angle/ radianFCI level of theory, see Fig. 12. This comparison yields a quantitative comparison of error +and S-diagnostic. +Figure 11 +Figure 12: The energy error of CCSD compared to the FCI reference energy using semi-log +scales. The area left of the vertical solid (black), dashed (green), and dotted-dashed (red) +lines correspond to the regions where the MRI, S2, and S3 diagnostic indicate a potential +failure of CCSD, respectively. +4.2.4 +H4 model (symmetrically disturbed on a circle) +Another variant of the H4 model that is commonly employed to evaluate CC methods consists +of four hydrogen atoms symmetrically distributed on a circle of radius R = 1.738 ˚A31. +For small or large angles, the system resembles two H2 molecules that are reasonably well +separated, but as the angle passes through 90, the four atoms form a square yielding a +degenerate ground state. The exact energy is smooth as a function of the angle, but at the +RHF level, we observe a cusp at 90, similar to the rotation of the carbon-carbon bond in +ethylene. We follow the system’s geometry configuration outlined in Ref.32, see Fig. 13. +We see that as the transition angle Θ tends to π/2 radians (90°), the HOMO-LUMO gap +closes and the system shows signs of (quasi) degeneracy, see Fig. 14a +Due to the quasi degeneracy near Θ = π/2 (90°), we again compare the proposed S- +diagnostics with the MRI index. We clearly see the indication of the quasi degeneracy in +27 + +Ground state energy error +EcCSD - FFCI +X +10-3 +10-3 +3 + X +2 +× 10-3 +0.0 +0.5 +1.0 +Angle/ radianΘ +Θ +Figure 13: Depiction of the H4 model undergoing a symmetric disturbance on a circle modeled +by the angle Θ. +(a) +(b) +Figure 14: +(a) HOMO-LUMO gap of H4 as a function of the transition angle (b) RHF, +RCCSD energies of H4 as a function of the transition angle. +28 + +HOMO-LUMO gap +0.5 +0.4 +0.3 +0.2 +1.0 +1.5 +2.0 +Angle/ RadianGround state energy +RHF +.8 +CCSD +FCI +-1.9 +-2.0 +-2.1 +-2.2 +1.0 +1.5 +2.0 +Angle/ Radianthe MRI index, see Fig. 15b. The S-diagnostic also indicates the problematic region near +zero transition angle. A cut-off value of v(2) +crit = 1.9 and v(3) +crit = 1.8 results in S2 and S3, +respectively, indicating the same region of quasi degeneracy as the MRI index. +(a) +(b) +Figure 15: +(a) The S-diagnostics of H4 as a function of the transition angle, the dotted +green, and red horizontal lines correspond to v(2) +crit = 1.9 and v(3) +crit = 1.8, respectively. (b) The +previously suggested MRI of H4 as a function of the transition angle. +For this small model Hamiltonian, it is moreover feasible to perform computations at +the FCI level of theory, see Fig. 16. This comparison reveals the variational collapse of the +CCSD energy, see Fig. 16a, and moreover yields a quantitative comparison of error and S- +diagnostic. The trusted region suggested by the S-diagnostic corresponds to a CCSD energy +error smaller than 2 · 10−4 a.u. which is below the chemical accuracy threshold. +Since the simulations performed in the previous section suggest that the previously used +T1, D1, and D2 diagnostics are uncorrelated, or merely weakly correlated, we do not report +their performance here. The computations showing the performance of the T1, D1, and D2 +diagnostics can be found in the Appendix, see Figs. 26 to 29 +4.3 +Transition metal complexes +In this section we investigate three square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, +and [Cu(H2O)4]2+. Transition metal complexes are in general considered to be strongly corre- +29 + +S1 +15 +S2 +S3 +10 +5 +0 +0.75 +1.00 +1.25 +1.50 +1.75 +2.00 +2.25 +Angle/ RadianMRI +0.5 +0.0 +-0.5 +-1.0 +0.75 +1.00 +1.25 +1.50 +1.75 +2.00 +2.25 +Angle/ Radian(a) +(b) +Figure 16: (a) The energy error of CCSD compared to the FCI reference energy. Note that +in the region of 1.3-1.8 radians the CCSD energy is lower than the FCI reference energy, +which indicates the variational collapse of the CCSD energy in this region. (b) The absolute +value of the energy error of CCSD compared to the FCI reference energy using semi-log +scales. The area between the vertical solid (black), dashed (green), and dotted-dashed (red) +lines correspond to the regions where the MRI, S2, and S3 diagnostic indicate a potential +failure of CCSD, respectively. +lated systems and complete active space self-consistent field (CASSCF) theory is commonly +applied, with multi-reference perturbation or truncated CI corrections for dynamic correla- +tion. However, as shown in Ref. 7, the single reference CC method performs very well despite +the large D1 diagnostic value. We use these systems to scrutinize the proposed S-diagnostics +for larger systems that are known to be misleadingly diagnosed by the D1 diagnostics. +Similar to Ref. 7, we perform the simulation of [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+ +in 6-31G basis using UHF and ROHF as reference states. Also, He, Ne, and Ar cores were +frozen in the nitrogen, chlorine, and copper atoms, respectively, resulting in 41 electrons +in 50, 66, and 74 orbitals for the [CuCl4]2−, [Cu(H2O)4]2+, and [Cu(NH3)4]2+ molecules, +respectively. We list the ground state energies obtained at the mean-field level of theory and +the corresponding CCSD results in Table 4; we moreover list the HOMO-LUMO gap which +enters in the S-diagnostics. +The results in Table 4 show that UHF and ROHF calculations predict similar energy +values. Moreover, using the UHF, or ROHF reference state results in similar CCSD energy +30 + +0.000 +Iartree +-0.002 +-0.004 +Energyl +-0.006 +-0.008 +EcOSD -EFCI +1.0 +1.5 +2.0 +Angle/ Radian10-2. +10 +IEcCSD -EFCll +10-5 +1.0 +1.5 +2.0 +Angle/ RadianTable 4: Energies values and HOMO-LUMO gap obtained with UHF, ROHF, and UCCSD +calculations given the reference state from UHF and ROHF, respectively. +UHF +γUHF +UCCSD +RHOF +γROHF +UCCSD +[CuCl4]2− +-3476.764 +0.453 +-3477.119 +-3476.763 +0.146 +-3477.119 +[Cu(NH3)4]2+ +-1862.977 +0.564 +-1863.663 +-1862.976 +0.351 +-1863.663 +[Cu(H2O)4]2+ +-1942.225 +0.677 +-1942.914 +-1942.224 +0.340 +-1942.914 +values. It is worth noticing that ROHF yields a generally smaller HOMO-LUMO gap. Since +the performed CCSD calculations differ in their reference, we can compute the S-diagnostics +for both sets of calculations. The results obtained from a UHF and ROHF reference are +listed in Table 5 and in Table 6, respectively. +Table 5: S-diagnostics obtained for the three square-planar copper complexes [CuCl4]2−, +[Cu(NH3)4]2+, and [Cu(H2O)4]2+ in spin unrestricted formulation with UHF reference. +S1 +S2 +S3 +T1 +D1 +D2 +[CuCl4]2− +0.208 +0.409 +0.406 +0.019 +0.158 +0.110 +[Cu(NH3)4]2+ +0.203 +0.403 +0.398 +0.014 +0.130 +0.121 +[Cu(H2O)4]2+ +0.155 +0.308 +0.305 +0.011 +0.072 +0.116 +We see that all S-diagnostic variants suggest that the CCSD calculations were successful, +and do not require additional numerical confirmation. This is opposed to the D1 diagnostics, +which aligns with the results reported in Ref. 7. +Table 6: S-diagnostics obtained for the three square-planar copper complexes [CuCl4]2−, +[Cu(NH3)4]2+, and [Cu(H2O)4]2+ in spin unrestricted formulation with ROHF reference. +S0 +S1 +S2 +T1 +D1 +D2 +[CuCl4]2− +0.645 +1.285 +1.27 +0.020 +0.167 +0.110 +[Cu(NH3)4]2+ +0.326 +0.646 +0.638 +0.015 +0.139 +0.121 +[Cu(H2O)4]2+ +0.309 +0.614 +0.607 +0.011 +0.077 +0.116 +Similar to the results in Table 5, we see that all variants of the S-diagnostic suggest that +the CCSD calculations were successful. However, it is worth noticing that the S-diagnostic +values have increased compared to the values reported in Table 5. +31 + +5 +Conclusion +In this article, we proposed three a posteriori diagnostics for single-reference CC calcula- +tions which we called S-diagnostics, due to their origin in the strong monotonicity analysis. +Contrary to previously suggested CC diagnostics, the S-diagnostics are motivated by math- +ematical principles that have been used to analyze CC methods of different flavors in the +past9,15,18,19,33. +We performed a set of geometry optimizations for small to medium-sized molecules in +order to reveal the correlation between the S-diagnostics and the error in geometry from +CCSD calculations. The test set comprised all molecules that were used in previous articles +concerning CC diagnostics3–6. Our investigations revealed that the S-diagnostics correlate +well and with large statistical relevance with different errors in geometry. This yields a first +estimate of the critical values for the S-diagnostics beyond which the computational results +should be confirmed using further and more careful numerical investigations. The observed +correlation between the S-diagnostics and the different errors in geometry are comparable +to the recently suggested EEN index8. A heuristic test revealed that the S-diagnostics also +correlate well and with large statistical relevance with the error in geometry at the MP2 level +of theory. This suggests that the S-diagnostics can also be used as an a posteriori diagnostic +for MP2 calculations. Our numerical simulations moreover showed that diagnostics based on +single excitation cluster amplitudes, i.e., D1 and T1, are uncorrelated to errors in geometry +optimization. +Following we investigated the S-diagnostics for transition state models that undergo a +transition from a region in which CC calculations are reliable to a regime where the CC cal- +culations require further numerical investigations—in this case, due to (quasi-) degeneracy of +the ground state. The S-diagnostic detects the corresponding regions of (quasi-) degeneracy +well. In fact, its performance is comparable to the recently suggested MRI indicator—an a +posteriori indicator for multi-reference character8. +The last set of numerical simulations targeted transition metal complexes which have +32 + +recently been carefully benchmarked7. The previously performed benchmark calculations +revealed that diagnostics based on single excitation amplitudes severely misdiagnose the +performance of CCSD for these transition metal complexes. Our computations confirm this, +and moreover, show that the S-diagnostic correctly confirms the accuracy of the CCSD +results outlined in Ref. 7. +These carefully performed numerical investigations suggest that the S-diagnostic is a +promising candidate for an a posteriori diagnostic for single-reference CC and MP2 calcu- +lations. To further confirm this, benchmarks on a larger set of molecules will be performed +in the future. Moreover, since the mathematical analysis of the single-reference CC method +generalizes to periodic systems as well, we believe that the S-diagnostic can moreover be +applied to simulations of solids at the CC and MP2 level of theory. +Throughout our numerical investigations, we observe a subpar performance of the T1 and +D1 diagnostics. This suggests that those diagnostics should once and for all be removed as +a posteriori diagnostic tools for single-reference CC calculations. +Acknowledgement +This work was partially supported by the Air Force Office of Scientific Research under the +award number FA9550-18-1-0095 and by the Simons Targeted Grants in Mathematics and +Physical Sciences on Moir´e Materials Magic (F.M.F.), by the Peder Sather Grant Program +(A.L., M.A.C., F.M.F.,), and by the Research Council of Norway (A.L., M.A.C.) through +Project No. +287906 (CCerror) and its Centres of Excellence scheme (Hylleraas Centre) +Project No. 262695. +Some of the calculations were performed on resources provided by +Sigma2 - the National Infrastructure for High Performance Computing and Data Storage in +Norway (Project No. NN4654K). We also want to thank Prof. Lin Lin, Prof. Trygve Helgaker, +Prof. Anna Krylov, Dr. Pavel Pokhilko, Dr. Tanner P. 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Benchmark variational coupled cluster doubles re- +sults. The Journal of Chemical Physics 2000, 113, 8873–8879. +36 + +(32) Bulik, I. W.; Henderson, T. M.; Scuseria, G. E. Can single-reference coupled cluster +theory describe static correlation? Journal of chemical theory and computation 2015, +11, 3171–3179. +(33) Faulstich, F. M.; Laestadius, A.; Legeza, O.; Schneider, R.; Kvaal, S. Analysis of the +tailored coupled-cluster method in quantum chemistry. SIAM J. Numer. Anal. 2019, +57, 2579–2607. +37 + +6 +Appendix +6.1 +Correlation in Geometry Optimization +Since we can correlate three S-diagnostic variants with three error measures, we can in +principle perform the piecewise linear fit that is presented in Section on Correlation in +Geometry Optimization for nine different scenarios. We here present the piecewise linear fits +which were not addressed in the above article. +6.1.1 +S1-diagnostic Correlations +(a) +(b) +Figure 17: The averaged relative error in geometry optimization as a function of the S1 value. +(a) The orange line corresponds to a piecewise linear fit to the data using four segments for +the piecewise linear function. (b) Piecewise linear fits to the data with a varying number of +segments. +38 + +4-seg. +0.03 +Ave. rel. diff. +0.02 +0.01 +0.2 +0.4 +0.6 +0.8 +1.0 +Si value0.03 +Ave. rel. diff. +0.02 +3-seg. +4-seg. +0.01 +5-seg. +6-seg. +0.2 +0.4 +0.6 +0.8 +1.0 +Si value(a) +(b) +Figure 18: +The maximal absolute error in geometry optimization as a function of the S1 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +(a) +(b) +Figure 19: +The averaged absolute error in geometry optimization as a function of the S1 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +39 + +0.150 +4-seg. +0.125 +0.100 +Max. diff. +0.075 +0.050 +. +0.025 +★+ +0.000 +0.2 +0.4 +0.6 +0.8 +1.0 +Si value0.150 +3-seg. +0.125 +4-seg. +5-seg. +0.100 +Max. diff. +6-seg. +0.075 +0.050 +. +0.025 +★★ +0.000 +0.2 +0.4 +0.6 +0.8 +1.0 +Si value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +0.02 +0.01 +4-seg. +0.00 +0.2 +0.4 +0.6 +0.8 +1.0 +Si value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +3-seg. +0.02 +4-seg. +5-seg. +0.01 +6-seg. +0.00 +0.2 +0.4 +0.6 +0.8 +1.0 +Si value6.1.2 +S2-diagnostic Correlations +(a) +(b) +Figure 20: The averaged relative error in geometry optimization as a function of the S2 value. +(a) The orange line corresponds to a piecewise linear fit to the data using four segments for +the piecewise linear function. (b) Piecewise linear fits to the data with a varying number of +segments. +40 + +4-seg. +0.03 +Ave. rel. diff. +0.02 +0.01 +0.5 +1.0 +1.5 +2.0 +S2 value0.03 +Ave. rel. diff. +0.02 +3-seg. +4-seg. +0.01 +5-seg. +6-seg. +0.5 +1.0 +1.5 +2.0 +S2 value(a) +(b) +Figure 21: +The maximal absolute error in geometry optimization as a function of the S2 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +(a) +(b) +Figure 22: +The averaged absolute error in geometry optimization as a function of the S2 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +41 + +0.150 +4-seg. +0.125 +0.100 +Max. diff. +0.075 +0.050 +0.025 +0.000 +0.5 +1.0 +1.5 +2.0 +S2 value0.150 +3-seg. +0.125 +4-seg. +5-seg. +0.100 +Max. diff. +6-seg. +0.075 +0.050 +0.025 +☆ +0.000 +0.5 +1.0 +1.5 +2.0 +S2 value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +0.02 +0.01 +4-seg. +0.00 +0.5 +1.0 +1.5 +2.0 +S2 value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +3-seg. +0.02 +4-seg. +5-seg. +0.01 +6-seg. +0.00 +0.5 +1.0 +1.5 +2.0 +S2 value6.1.3 +S2-diagnostic Correlations +(a) +(b) +Figure 23: The averaged relative error in geometry optimization as a function of the S3 value. +(a) The orange line corresponds to a piecewise linear fit to the data using four segments for +the piecewise linear function. (b) Piecewise linear fits to the data with a varying number of +segments. +42 + +4-seg. +0.03 +Ave. rel. diff. +0.02 +0.01 +0.5 +1.0 +1.5 +2.0 +S3 value7 +0.03 +Ave. rel. diff. +0.02 +3-seg. +4-seg. +0.01 +5-seg. +6-seg. +0.5 +1.0 +1.5 +2.0 +S3 value(a) +(b) +Figure 24: +The maximal absolute error in geometry optimization as a function of the S3 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +(a) +(b) +Figure 25: +The averaged absolute error in geometry optimization as a function of the S3 +value. (a) The orange line corresponds to a piecewise linear fit to the data using four segments +for the piecewise linear function. (b) Piecewise linear fits to the data with a varying number +of segments. +43 + +0.150 +4-seg. +0.125 +0.100 +Max. diff. +0.075 +0.050 +0.025 +0.000 +0.5 +1.0 +1.5 +2.0 +S3 value0.150 +3-seg. +0.125 +4-seg. +5-seg. +0.100 +Max. diff. +6-seg. +0.075 +0.050 +0.025 +0.000 +0.5 +1.0 +1.5 +2.0 +S3 value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +0.02 +0.01 +4-seg. +0.00 +0.5 +1.0 +1.5 +2.0 +S3 value0.06 +★ +0.05 +Ave. abs. diff. +0.04 +0.03 +3-seg. +0.02 +4-seg. +5-seg. +0.01 +6-seg. +0.00 +0.5 +1.0 +1.5 +2.0 +S3 value6.2 +Transition State Models +Here we shall compare the performance of the S-diagnostics and the previously used T1, D1, +and D2 diagnostics. +(a) +(b) +Figure 26: +(a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 +diagnostics +(a) +(b) +Figure 27: +(a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 +diagnostics +44 + +So +S +S2 +101 +100 +0 +2 +3 +4 +5 +X-position/ ao10-1 +T1 +D1 +D2 +10-2 +0.0 +0.5 +1.0 +1.5 +2.0 +2.5 +3.0 +Twist angle/ Radian100 +T1 +D1 +D2 +10-1 +10-2 +0 +2 +3 +4 +5 +1 +X-position/ ao3.0 +S1 +S2 +2.5 +S3 +2.0 +1.5 +1.0 +0.5 +0.0 +0.5 +1.0 +1.5 +2.0 +2.5 +3.0 +Twist angle/ Radian(a) +(b) +Figure 28: +(a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 +diagnostics +(a) +(b) +Figure 29: +(a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 +diagnostics +45 + +6 +So +S1 +5 +S2 +4 +3 +2 +1 +0 +0.00 +0.25 +0.50 +0.75 +1.00 +1.25 +1.50 +Angle/ radianS1 +15 +S2 +S3 +10 +5 +0 +0.75 +1.00 +1.25 +1.50 +1.75 +2.00 +2.25 +Angle/ RadianT1 +D1 +D: +10- +0.00 +0.25 +0.50 +0.75 +1.00 +1.25 +1.50 +Angle/ radian100 +T1 +D1 +D2 +10-1 +0.75 +1.00 +1.25 +1.50 +1.75 +2.00 +2.25 +Angle/ RadianGraphical TOC Entry +Running CCSD ... +S-Diagnostic +46 + diff --git a/39FIT4oBgHgl3EQf6SuL/content/tmp_files/load_file.txt b/39FIT4oBgHgl3EQf6SuL/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..075055c3a44d83d9cad7480f118fa33ebb215a5b --- /dev/null +++ b/39FIT4oBgHgl3EQf6SuL/content/tmp_files/load_file.txt @@ -0,0 +1,1506 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf,len=1505 +page_content='The S-diagnostic—an a posteriori error assessment for single-reference coupled-cluster methods Fabian M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Faulstich,∗,† H˚akon E.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Kristiansen,‡ Mihaly A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Csirik,‡ Simen Kvaal,‡ Thomas Bondo Pedersen,‡ and Andre Laestadius¶,‡ †Department of Mathematics, University of California, Berkeley ‡Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Norway ¶Department of Computer Science, Oslo Metropolitan University, Norway E-mail: f.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='faulstich@berkeley.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='edu Abstract We propose a novel a posteriori error assessment for the single-reference coupled- cluster (SRCC) method called the S-diagnostic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We provide a derivation of the S- diagnostic that is rooted in the mathematical analysis of different SRCC variants.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We numerically scrutinized the S-diagnostic, testing its performance for (1) geometry op- timizations, (2) electronic correlation simulations of systems with varying numerical difficulty, and (3) the square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Throughout the numerical investigations, the S-diagnostic is compared to other SRCC diagnostic procedures, that is, the T1, D1, and D2 diagnostics as well as different indices of multi-determinantal and multi-reference character in coupled-cluster theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Our numerical investigations show that the S-diagnostic outperforms the T1, 1 arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='11393v1 [physics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='chem-ph] 26 Jan 2023 D1, and D2 diagnostics and is comparable to the indices of multi-determinantal and multi-reference character in coupled-cluster theory in their individual fields of applica- bility.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The experiments investigating the performance of the S-diagnostic for geometry optimizations using SRCC reveal that the S-diagnostic correlates well with different error measures at a high level of statistical relevance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The experiments investigating the performance of the S-diagnostic for electronic correlation simulations show that the S-diagnostic correctly predicts strong multi-reference regimes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic more- over correctly detects the successful SRCC computations for [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+, which have been known to be misdiagnosed by T1 and D1 diagnos- tics in the past.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This shows that the S-diagnostic is a promising candidate for an a posteriori diagnostic for SRCC calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 1 Introduction While the underlying mathematical theory of the quantum many-body problem is, on a fun- damental level, well described, the governing equation, namely, the many-body Schr¨odinger equation, remains numerically intractable for a large number of particles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In fact, the many- body Schr¨odinger equation poses one of today’s hardest numerical challenges, mainly due to the exponential growth in computational complexity with the number of electrons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Over the past century, numerous numerical approximation techniques of various levels of cost and accuracy have been developed in order to overcome this curse of dimensionality.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Ar- guably, the most successful approaches are based on coupled-cluster (CC) theory1, which defines a cost-efficient hierarchy of increasingly accurate methods, including the so-called gold standard of quantum chemistry—the coupled-cluster singles-and-doubles with perturbative triples (CCSD(T))2 model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Despite the great success of CC theory, its reliability is not yet fully quantifiable.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' More precisely, aside from a few heuristically derived results, there exists no universally reliable diagnostic that indicates if the computational result is to be trusted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This shortcoming 2 is most apparent in the regime of transition metal compounds and molecular bond break- ing/making processes, systems dominated by strong nondynamic electron-correlation effects, where several methods based on CC theory tend to fail along with all other numerically tractable approaches.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Therefore, a posteriori error diagnostics are urgently needed in the field.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Until very recently, the diagnostic approaches available were limited to the so-called T1 (also called τ1)3,4, D1, and D2 diagnostic5,6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Despite clear numerical evidence that diagnostics based on the single excitation amplitudes, such as the T1 and D1 diagnostics, do not provide reliable indicators7, they are commonly used due to the lack of alternatives.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Recently, an alternative set of multi-reference indices was introduced which provided a number of a posteriori diagnostic tools8 christened the indices of multi-determinantal and multi-reference character in coupled-cluster theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' These tools are highly descriptive and able to determine different molecular scenarios in which CC theory may fail.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We provide an alternative error diagnostic that is based on assumptions employed in the mathematical analysis CC theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' More precisely, our diagnostic is derived from the math- ematical analysis of CC theory that provides sufficient conditions for a locally unique and quasi-optimal solution to the CC working equations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Central to our derivation is the strong monotonicity property, as introduced by Schneider9, which is eponymous for our S-diagnostic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Compared to the recently suggested nine indices that describe the multi-determinantal and multi-reference character in coupled-cluster theory8, the S-diagnostic is a diagnostic tech- nique that can be applied to multi-determinantal and multi-reference scenarios alike.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We complement our theoretical derivation of the S-diagnostic with numerical simulations scruti- nizing its validity for different geometry optimizations, and electronic correlation computa- tions for systems of varying numerical difficulty for single reference coupled-cluster methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The rest of the article is structured as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We begin with a brief review of CC theory, followed by a short summary of the mathematical results derived in previous works which lay the mathematical foundation for the proposed S-diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Then, we derive the main 3 result, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', the S-diagnostic which is subsequently numerically scrutinized.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 2 Theory 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 Brief overview of coupled-cluster theory In CC theory the wave function is parametrized by the exponential |ψ⟩ = e ˆT|φ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Here, |φ0⟩ is the reference determinant defining the occupied spin orbitals, and ˆT = � µ tµ ˆXµ = � k ˆTk is a cluster operator, where ˆTk excites k = 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' , N electrons—k is the excitation rank of a given ˆTk—from the occupied spin orbitals into the virtual spin-orbitals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' All possible excited determinants can be expressed as |µ⟩ = ˆXµ|φ0⟩ for some multi-index µ labeling occupied and virtual spin-orbitals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The governing equations determining amplitudes (tµ), and therewith also the CC energy ECC(t), are given by fCC(t) = 0, where � � � � � ECC(t) = ⟨φ0|e− ˆT ˆHe ˆT|φ0⟩ (fCC(t))µ = ⟨µ|e− ˆT ˆHe ˆT|φ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (1) More compactly, Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (1) can be expressed using the CC Lagrangian10,11 L(t, z) = ECC(t) + � µ zµ(fCC(t))µ = ⟨φ0|(ˆI + ˆZ†)e− ˆT ˆHe ˆT|φ0⟩, (2) where (zµ) are the Lagrange multipliers which are the dual variables corresponding to (tµ).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In the extended CC theory12–14 (ECC), which will be used to introduce additional information to our S-diagnostic, the Lagrangian is replaced with the more general energy expression EECC(t, λ) = ⟨φ0|e ˆΛ†e− ˆT ˆHe ˆT|φ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (3) 4 Consequently, through the substitution eˆΛ = ˆI + ˆZ, we have EECC(t, λ) = L(t, z).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The stationarity condition can then be formulated as FECC = 0, where FECC = (∂ΛEECC, ∂TEECC) (4) is the so-called flipped gradient15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The partial derivatives with respect to the amplitudes in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (4) are given by ∂λµEECC = ⟨µ|e ˆΛ†e− ˆT ˆHe ˆT|φ0⟩, ∂tµEECC = ⟨φ0|e ˆΛ†[e− ˆT ˆHe ˆT, ˆXµ]|φ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (5) Since the number of determinants, and therewith the size of the system’s governing equations, suffer in general from the curse of dimensionality (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', it grows exponentially fast with the number of electrons), restrictions are necessary to ensure the system’s numerical tractability.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In practice this is achieved by restricting excitations to excited determinants that correspond to a preselected index set—this is referred to as truncation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Such excitation hierarchies are commonly denoted as singles (S), doubles (D), etc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We emphasize that the CC working equations, as a system of polynomial equations, typically have a large number of roots, and the corresponding landscape of said roots is highly non-trivial16.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Consequently, different limit processes have to be considered separately and carefully studied.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' More pre- cisely, the convergence of the CC roots with respect to the basis set discretization, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', convergence towards the complete basis set limit, is a fundamentally different limit process from the convergence with respect to the coupled-cluster truncations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Hence, it is important to note that the convergence of the numerical root finding procedure for the truncated stan- dard (or extended) CC equations does not by itself imply convergence of the roots to the corresponding exact roots.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In other words, whether the discrete roots converge to the exact roots cannot simply be assumed to be true in general.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Before proceeding further with the derivation of the S-diagnostic, we wish to provide the reader with a more precise description of the underlying mathematical conventions in 5 coupled-cluster theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We first emphasize the distinction between the cluster amplitudes and the corresponding wave function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Although related, these objects live in different spaces which we shall elaborate on subsequently.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' First, the wave function object |ψ⟩ = e ˆT|φ0⟩ lives in the N-particle Hilbert space of square-integrable functions, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', L2 = {ψ : � |ψ|2 < +∞}, with finite kinetic energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 We remind the reader of the notation for the L2-inner product ⟨ψ′|ψ⟩, and its induced norm ∥ψ∥2 L2 = ⟨ψ|ψ⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Second, operators that act on the wave function, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', the Hamiltonian or excitation operators.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In this case, we can introduce a norm expression for the operator inherited from the function space it is defined on.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For example, let O be an operator defined on L2 then we define the L2 operator norm ∥O∥L2 = sup{∥OΨ∥L2 : ∥Ψ∥L2 = 1 and Ψ ∈ L2}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (6) Note that this reduces to the conventional matrix norm in the finite dimensional case.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Third, the CC amplitudes (tµ) live in the Hilbert space of finite square summable sequences denoted the ℓ2-space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This space is equipped with the ℓ2-inner product17, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', let x = (xµ) and y = (yµ) be two finite sequences, the ℓ2-inner product is defined as ⟨x, y⟩ℓ2 = � µ xµyµ, which induces the norm ∥x∥2 ℓ2 = ⟨x, x⟩ℓ2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Henceforth, we shall denote the full amplitude space by V, and the truncated amplitude space, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', the space only containing single and double amplitudes, by V(d);' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' note that we use “d” in this section to distinguish objects that are subject to imposed truncations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We moreover follow the mathematically convenient convention that 1Mathematically, assuming finite kinetic energy is important for the well-posedness of the Schr¨odinger equation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In a “weak” formulation this is given by (here for simplicity leaving out spin degrees of freedom) � R3N |∇ψ(r1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' , rN)|2dr1 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' drN < +∞.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In the mathematical literature this can be summarized by ψ ∈ H1 (Sobolev space)17.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This extra constraint of finite kinetic energy is moreover important for the “continuous” (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', infinite dimensional) formulation of coupled-cluster18.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 6 uses a generic constant C, independent of the main variables under consideration, for the different estimations performed subsequently.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Having laid down the basic definitions, we now recall a result that gives insight into the root convergence of CC theory which can be established using a basic existence result of nonlinear analysis9,15,18–20.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' To state this result, we need two more definitions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' First, local strong monotonicity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Let t, t′, t∗ be cluster amplitudes with ˆT, ˆT ′ and ˆT∗ denoting the corresponding cluster operators.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Set ∆(t, t′) = ⟨fCC(t) − fCC(t′), t − t′⟩ℓ2, (7) and furthermore ∆ ˆT = ˆT − ˆT ′.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Then the CC function fCC is said to be locally strongly monotone at t∗ if for some r > 0, γ > 0 and all t, t′ within the distance r of t∗ ∆(t, t′) ≥ γ∥t − t′∥2 ℓ2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (8) Second, local Lipschitz continuity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The function fCC is said to be locally Lipschitz con- tinuous at t∗ with Lipschitz constant L > 0 if ∥fCC(t) − fCC(t′)∥ℓ2 ≤ L∥t − t′∥ℓ2 (9) for any t, t′ in a ball around t∗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note that in the finite-dimensional case, fCC is indeed locally Lipschitz since it is continuously differentiable.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' With these definitions at hand, we can recall the following result9,19: Let fCC(t∗) = 0 and assume that fCC is locally strongly monotone with constant γ > 0 at t∗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Furthermore, let V(d) ⊂ V be a truncated amplitude space with Pd being the orthogonal projector onto V(d) and fd a discretization of fCC, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', fd = PdfCC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Then, the following holds: 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t∗ is locally unique, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', |ψ∗⟩ = eT∗|φ0⟩ is the only solution within a sufficiently small 7 ball.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' There exists a sufficiently large d0, such that for any d > d0, there exists t(d) ∗ ∈ V(d) such that fd(t(d) ∗ ) = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This root is unique in a ball centered at t∗ (for some radius r) and we have quasi-optimality of the discrete solution t(d) ∗ i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' ∥t(d) ∗ − t∗∥ℓ2 ≤ L γ dist(t∗, V(d)), (10) where dist(v, V(d)) is the distance from v to V(d) measured using the norm of V, and L is the Lipschitz constant of fCC at t∗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For d > d0, the discrete equations fd(t(d) ∗ ) = 0 have locally unique solutions, and in addition to the error estimate (10), we have the quadratic energy error bound |ECC(t(d) ∗ ) − E0| ≤ C1∥t∗ − t(d) ∗ ∥2 ℓ2 + C2∥t∗ − t(d) ∗ ∥ℓ2∥z∗ − z(d) ∗ ∥ℓ2, (11) where E0 is the ground state energy and z∗ and z(d) ∗ are the Lagrange multiplier of the exact and truncated equations, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The constants C1, C2 > 0 arise in general from particular continuity considerations18,19 which shall not be further characterized here.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We emphasize that the result in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 18 is more elaborate since it is concerned with an infinite dimensional amplitude space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Here, we implicitly assume a finite-dimensional am- plitude space which allows us to present the result in the simpler but equivalent ℓ2-topology.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This result ensures that the CC method is convergent as the truncated cluster amplitude space V(d) approaches the untruncated limit and that the energy converges quadratically.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note also that the above results hold for conventional single-reference CC theory but can be formulated for the extended CC theory as well with some slight modifications (see Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 15).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 8 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 Strong Monotonicity Property The local strong monotonicity at a root of the CC equations is the mathematical basis of what we deem as a reliable solution obtained from a truncated CC calculation since this implies a unique solution of fd = 0 for sufficiently good approximate V(d) as well as a quadratic convergence in the energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Moreover, it follows that the Jacobian of both fCC and fd are non-degenerate at such a solution.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In order to derive the S-diagnostic, we start with a brief review of the proof presented in the literature15,18,20 while making some slight improvements.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We subsequently establish Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (8) up to second order in ∥t−t′∥ℓ2 under certain assumptions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' To that end, we define ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) = ⟨∆ ˆTφ0|e− ˆT∗( ˆH − E0)e ˆT∗|∆ ˆTφ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (12) Now, suppose that fCC(t∗) = 0, then by Taylor expansion we find ∆(t, t′) = ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) + O((∆t)3).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (13) For the proof, we refer the reader to Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 19.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We emphasize that the core idea of the proof is a Taylor expansion of e ˆT and e ˆT ′ around ˆT∗, which does not require t∗ itself to be small, rather, the assumption is that we are within a certain neighborhood of t∗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' By Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (13), if ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) ≥ γ′∥t − t′∥2 ℓ2 with γ′ > 0 for t, t′ within distance r′ from t∗, then it is possible to find r > 0 such that Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (8) is true for γ ∈ (0, γ′] for t, t′ at distance at most r ≤ r′) from t∗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Consequently, we wish to establish ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) ≥ γ′∥t − t′∥2 ℓ2 (14) for some γ′ = γ′(t∗) > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We subsequently assume that the ground state of ˆH exists and is non-degenerate, and that ˆH admits a spectral gap γ∗ > 0 between the ground-state energy E0 and the rest of the 9 spectrum of ˆH, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', γ∗ = inf � ⟨ψ| ˆH − E0|ψ⟩ ⟨ψ|ψ⟩ : |ψ⟩ ⊥ |ψ∗⟩ � > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (15) Moreover, we assume that the reference |φ0⟩ is such that it is not orthogonal to the ground- state wave function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' With these assumptions, we can establish an improved version of Lemma 11 in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 15 and Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 19: If t∗ solves fCC(t∗) = 0 then for |ψ⟩ ⊥ |φ0⟩ ⟨ψ| ˆH − E0|ψ⟩ ≥ γeff ∗ ∥ψ∥2 L2, (16) where γeff ∗ = γ∗ ∥eT∗φ0∥2 L2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (17) For the sake of clarity, we here display the used L2-norm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Equation 16 can be obtained as follows: Let P∗ be the projection onto the solution |ψ∗⟩, then ⟨ψ|( ˆH − E0)ψ⟩ = ⟨ψ − P∗(ψ)| ˆH − E0|ψ − P∗(ψ)⟩ ≥ γ∗∥ψ − P∗(ψ)∥2 L2 = ∥ψ∥2 L2 − 2Re⟨ψ|P∗(ψ)⟩ + ∥P∗(ψ)∥2 L2 = ∥ψ∥2 L2 − |⟨ψ|ψ∗⟩|2 ∥ψ∗∥2 L2 = ∥ψ∥2 L2 − |⟨ψ|(eT∗ − I)φ0⟩|2 ∥ψ∗∥2 L2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (18) We next note that |⟨ψ|(eT∗ − I)φ0⟩|2 ∥ψ∗∥2 L2 ≤ ∥ψ∥2 L2 ∥(eT∗ − I)φ0∥2 L2 ∥ψ∗∥2 L2 = ∥ψ∥2 L2 � 1 − 1 ∥ψ∗∥2 L2 � , which inserted in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (18) yields the desired result.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 10 With the inequality (16) at hand, we can establish the inequality ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) = ⟨∆ ˆTφ0|e− ˆT∗( ˆH − E0)e ˆT∗|∆ ˆTφ0⟩ ≥ γeff ∗ ∥∆ ˆTφ0∥2 L2 − CGCC(T∗)∥∆ ˆTφ0∥2 H1, (19) where C is a constant that depends on the Hamiltonian ˆH and GCC(T∗) = ∥e ˆT∗ − I∥L2 + ∥e− ˆT † ∗ − I∥L2∥e ˆT∗∥L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (20) Equation (19) follows from the definition of ∆2 and that ∆2 = ⟨∆ ˆTφ0| ˆH − E0|∆ ˆTφ0⟩ + ⟨∆ ˆTφ0| ˆH − E0|(e ˆT∗ − I)∆ ˆTφ0⟩ + ⟨(e− ˆT † ∗ − I)∆ ˆTφ0| ˆH − E0|e ˆT∗∆ ˆTφ0⟩, then, using that ˆH is a bounded operator in the energy norm and the estimate in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (16), we obtain the desired result in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (19).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3 The S-Diagnostic Given the reformulation of the strong monotonicity property in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (19), we consider a computation to be successful if the results fulfill Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (19).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In order to derive an a posterioi diagnostic, we reformulate this inequality in a way that yields a function that indicates a reliable computation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' To ensure the tractability of the said function we introduce the following approximations, which will yield diagnostic functions of different flavors, later referred to as S1, S2, and S3, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 11 Approximation (i) A first-order Taylor approximation of e ˆT∗ and the trivial operator norm inequality 2 yields ∥e ˆT∗φ0∥2 L2 ≈ 1 + ∥ ˆT∗∥2 L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (21) Approximation (ii) For GCC we use (i) and make the approximation (linearization) GCC(T) ≈ 2∥ ˆT∥L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (22) Approximation (iii) As outlined in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 20, we can moreover estimate (1 + ∥ ˆZ∗∥2 L2)1/2 ≈ (1 + ∥ ˆT∗∥2 L2)−1/2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (23) This approximation follows by equating the bra and ket wave functions (in the bivariational formulation) e− ˆT † ∗(ˆI + ˆZ∗)|φ0⟩ = ∥e ˆT∗φ0∥−2 L2 e ˆT∗|φ0⟩ with eˆΛ∗ = ˆI + ˆZ∗ and approximating e− ˆT † ∗(ˆI + ˆZ∗)|φ0⟩ ≈ (ˆI + ˆZ∗)|φ0⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (24) With these approximations at hand, we can derive three variants of the S-diagnostic that we shall investigate subsequently.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 The S1-diagnostic Starting from Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (19), we first note that we are considering the finite-dimensional case, and therefore there exists a constant C > 0 such that ∆2(t∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' t, t′) ≥ � γeff ∗ − CGCC( ˆT∗) � ∥∆ ˆTφ0∥2 L2 (25) 2 ∥ ˆT∗φ0∥L2 ≤ ∥ ˆT∗∥L2∥φ0∥L2 = ∥ ˆT∗∥L2 12 holds.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Next, we employ Approximation (ii) in the definition of GCC( ˆT∗), and combine Ap- proximation (i) with the definition of γeff ∗ in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (17), i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', γeff ∗ ≈ γ∗ 1 + ∥ ˆT∗∥2 L2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (26) This yields γeff ∗ − CGCC( ˆT∗) ≈ γ∗ 1 + ∥ ˆT∗∥2 L2 − 2C∥ ˆT∗∥L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (27) Requiring that this expression is positive, we obtain the success condition 1 2 > C γ∗ (1 + ∥ ˆT∗∥2 L2)∥ ˆT∗∥L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (28) 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 The S2-diagnostic By applying Approximation (iii) to Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (28), we obtain a success condition that involves the Lagrange multipliers, namely, 1 2 > C γ∗ ∥ ˆT∗∥2 L2 (1 + ∥ ˆZ∗∥2 L2) .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (29) 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 The S3-diagnostic To obtain a diagnostic that includes the Lagrangian multipliers without making use of Ap- proximation (iii), we shall follow the argument on strong monotonicity of the extended CC function FECC defined above.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note that although we use the extended CC formalism in this section (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', where the Lagrange multipliers are treated as a second set of cluster amplitudes), the derived diagnostic is for the conventional single reference CC method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Subsequently, we assume that truncations of ˆT and ˆΛ are at the same rank, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', the truncated scheme follows as described above for V(d) but takes the double form V(d) × V(d) and with Pd being the orthogonal projector onto Vd × Vd.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note that this aligns with practical implementations of the CC Lagrangian.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For brevity, let ˆU = ( ˆT, ˆΛ), ˆU∗ = ( ˆT∗, ˆΛ∗) and ˆU (d) ∗ = ( ˆT (d) ∗ , ˆΛ(d) ∗ ) and furthermore, set Fd to be the Galerkin discretization of FECC, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', Fd( ˆU (d)) = PdFECC( ˆU (d)).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 13 In Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 15 strong monotonicity of FECC was established under certain assumptions, and recently generalized to a class of extended CC theories21.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We, therefore, refer the reader to these references for the full proof, here we shall only address those parts relevant to our diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Similarly to the CC case, local strong monotonicity of FECC holds if ∆ECC := ⟨FECC(u) − FECC(u′), u − u′⟩ ≥ γ∥u − u′∥2 (30) for some positive constant γ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note that we here extended the notation such that u carries both the primal-, and dual variables.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Furthermore, we let ∆ECC up to second order in ∥u−u′∥ be denoted ∆ECC 2 and similarly to Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (19) we have ∆ECC 2 (u∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' u, u′) ≥ γeff ∗ ∥∆ ˆUφ0∥2 L2 − CGECC( ˆU∗)∥∆ ˆUφ0∥2 H1, (31) where GECC( ˆU) = GECC( ˆT, ˆΛ) = ∥e− ˆT †e ˆΛ∥L2∥e ˆT − I∥L2 + ∥e− ˆT †e ˆΛ − I∥L2 + K∥φ0∥H1∥e− ˆT †∥L2∥e ˆT∥L2∥e ˆΛ − I∥L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' for some positive constant K Starting from Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (31), we note again that since we are considering finite-dimensional Hilbert spaces, there exists a constant C > 0 such that ∆ECC 2 (u∗;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' u, u′) ≥ � γeff ∗ − CGECC( ˆU∗) � ∥∆ ˆUφ0∥2 L2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (32) We next employ a variation of Approximation (iii): For GECC we make the substitution eˆΛ = ˆI + ˆZ and approximate with a low-order Taylor expansion ˜GECC( ˆT, ˆZ) := GECC( ˆT, ˆΛ( ˆZ)) ≈ C(∥ ˆT∥L2 + ∥ ˆZ∥L2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (33) 14 Hence, we arrive at the approximation (and we remind the reader that C is used as a generic constant) γeff ∗ − CGECC( ˆU∗) ≈ γ∗ 1 + ∥ ˆT∗∥2 L2 − C(∥ ˆT∗∥L2 + ∥ ˆZ∗∥L2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (34) Requiring that this expression is positive, we find the condition 1 > C γ∗ � (1 + ∥ ˆT∗∥2 L2)(∥ ˆT∗∥L2 + ∥ ˆZ∗∥L2) � ≈ C γ∗ � (1 + ∥ ˆT∗∥2 L2)∥ ˆT∗∥L2 + ∥ ˆZ∗∥L2 1 + ∥ ˆZ∗∥L2 � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (35) 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 Approximation of operator norms using singular values The above-derived success conditions Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (28), (29) and (35) can be directly implemented, however, the quantities involved will depend on the system size.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This can be illustrated by simply placing copies of a molecular system at a distance such that they are at least numerically non-interacting.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In that case, the reliability of the overall CC calculation is determined by the CC calculations of a single copy, yet, the operator norm of the cluster operator ∥ ˆT∥L2 will scale with the system’s size.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' To remedy this serious difficulty, we consider an alternative interpretation of the clus- ter operators22: The CCSD method yields a set of single amplitudes (ta i ) forming a ma- trix in Rnocc×nvirt and a set of double amplitudes (tab ij ) forming a fourth-order tensor in Rnocc×nocc×nvirt×nvirt.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' As outlined in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 22, in order to capture the pair correlation we re- shape the fourth-order tensor that describes the double amplitudes as a matrix in Rn2 occ×n2 virt, an operation that is also known as “matricization”.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In order to include pair correlations captured by the single amplitudes, we can moreover extend (tab ij ) to also include products of single amplitudes which yields MT ∈ Rn2 occ×n2 virt with matrix elements [MT]ij,ab = tab ij + (ta i tb j − tb ita j).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (36) 15 The singular value decomposition then yields MT = UTΣTV ⊤ T , (37) where UT, VT are real orthogonal matrix and ΣT is diagonal.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We will subsequently use the spectral norm, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', the largest singular value, here denoted as σ(MT) to approximate the operator norm, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', ∥ ˆT∥L2 ≈ σ(MT) =: σ(t) (38) and similarly for the dual variable z.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Incorporating this into the success conditions Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (28), (29) and (35) yields the S-diagnostic functions used in this article S1(t) := 1 γ∗ (1 + σ(t)2)σ(t), (39a) S2(t, z) := 1 γ∗ σ(t) 1 + σ(z)2, (39b) S3(t, z) := 1 γ∗ � (1 + σ(t)2)σ(t) + σ(z) 1 + σ(z)2 � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (39c) For computed cluster amplitudes (t) and Lagrange multipliers (z), the above functions will yield an S-diagnostic value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In the following numerical investigations, we will first investigate the statistical correlation between the computed S-diagnostic value and different measures of error.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Second, we will investigate a quantitative bound for the S-diagnostic value beyond which the computations may not be reliable and further benchmark computations with more profound error classifications are advised.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4 Numerical simulations In this section, we numerically scrutinize the proposed S-diagnostic procedures derived in the previous sections.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' All simulations are performed using the Python-based Simulations of Chemistry Framework (PySCF)23–25.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' First, we perform geometry optimizations on a 16 medium-sized set of molecules comprising all molecules that were investigated in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3,5,6 to test the T1, D1, and D2 diagnostic, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' With this data at hand, we can propose an initial set of values, beyond which our diagnostic suggests interpreting the computational results with caution and if possible benchmarking with additional methods that allow for a more profound error classification.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Second, we target small model systems whose multi- reference character can be controlled by simple geometric changes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Third, we numerically investigate transition metal complexes that have been shown to be misdiagnosed by the T1 and D1 diagnostics7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 Correlation in Geometry Optimization In order to quantify the correlation between the S-diagnostics and the error of the CC method, we numerically investigate the Spearman correlation26 between the error of in sil- ico geometry optimizations and the corresponding value of the S-diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We perform geometry optimizations for 34 small to medium-sized molecules that were previously studied in relation to CC error classifications3,5,6, see Table 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Table 1: Molecules which are used in the geometry optimization presented here.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' H2N2 HOF C2H2 ClOH H2S O3 FNO ClNO C2 C3 CO HNO HNC HOF Cl2O P2 N2H2 HCN CH2NH N2 C2H4 F2 HOCl Cl2 HF CH4 H2O SiH4 NH3 HCl CO2 BeO H2CO CH2 The calculations are performed using the CC method with singles and doubles (CCSD) using the cc-pVDZ basis set provided by PySCF;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' the geometry optimization is performed using the interface to PyBerny27.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The numerically obtained results are compared with exper- imentally measured geometries of the considered systems in their gas phases extracted from the Computational Chemistry Comparison and Benchmark Data Base (CCCBDB)28.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Since the computed atomic positions cannot be directly compared, we introduce the bond-length matrix that describes the pairwise distance between the atoms in the molecular compound.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 17 This bond-length matrix can be directly compared with the bond-length matrix provided by CCCBDB if we label and order the atoms of the corresponding system accordingly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We in- vestigate the correlation between the S-diagnostics and three possible error characterizations obtained from the absolute difference of the bond-length matrices denoted D(diff): i) The maximal absolute error (∆r(max) abs ): the maximal absolute deviation of the numeri- cally obtained bond-length matrix to the experimentally obtained bond-length matrix, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', ∆r(max) abs = max i,j D(diff) ij ii) The averaged absolute error (∆r(ave) abs ): the averaged absolute deviation of the numeri- cally obtained bond-length matrix to the experimentally obtained bond-length matrix, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', ∆r(ave) abs = � i,j D(diff) i,j Natoms iii) The averaged relative error (∆r(ave) rel ): the averaged relative deviation of the numerically obtained bond-length matrix to the experimentally obtained bond-length matrix, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', ∆r(ave) rel = � i,j D(diff) i,j Natoms maxi,j D(diff) ij Computing the Spearman correlation between the errors listed above and the proposed S- diagnostics, we find that all suggested S-diagnostics correlate well with all the error measures suggested, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', we consistently find correlations of rsp > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 with p < 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0008, see Table 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The largest correlation is observed between the maximal absolute error (∆r(max) abs ) and S2 and S3 where we find a correlation of rsp = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='58476 with p = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00018.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For comparison, we compute the Spearman correlation for the previously suggested T1, D1, and D2 diagnostic in Table 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We find that T1, and D1, are uncorrelated to all the errors that we investigate here, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', rsp < 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 with p > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The D2 diagnostic6 shows a correlation with the averaged absolute error (∆r(ave) abs ) and the averaged relative error (∆r(ave) rel ), where we find a correlation of rsp = 18 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='36886 with p = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='026847 and rsp = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='35496 with p = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='033646, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We moreover compare the S-diagnostics with the recently suggested indices of multi-determinantal and multi-reference character in CC theory8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We find that similar to the S-diagnostics, the EEN index8 correlates well with the maximal absolute error (∆r(max) abs );' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' we observe a correlation of rsp = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='53572 with p = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000759.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Directly comparing the Spearman correlation of the S-diagnostics with the T1, D1, and D2 diagnostic, we see that the S-diagnostics have a significantly higher correlation than the heuristically motivated diagnostics T1, D1 and D2 diagnostics while exhibiting a higher level of stochastic significance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Comparing the Spearman correlation of the S-diagnostics with the indices of multi-determinantal and multi-reference character in CC theory, we find that the S-diagnostic and EEN show similar correlation with the maximal absolute error (∆r(max) abs ) with a comparable level of stochastic significance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Table 2: Spearman correlation between the S-diagnostic computed form CCSD amplitudes and different errors in geometry optimization.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The pair-entries show the rank correlation and the corresponding p-value, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', (rsp, p).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' ∆r(max) abs ∆r(ave) abs ∆r(ave) rel S1 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='57910, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000215) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='57761, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000225) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='53668, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000740) S2 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='58476, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000180) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='58584, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000174) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='54543, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000581) S3 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='58476, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000180) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} 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metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='02034, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='906294) D2 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='16974, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='329625) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='36886, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='026847) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='35496, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='033646) EEN (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='53572, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000759) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='42059, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='010643) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='33694, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='044488) In order to obtain an approximate trusted region suggested by the S-diagnostics, we require a descriptive function that maps the value obtained from the S-diagnostic to the error in geometry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Since the Spearman correlation describes a monotone relation between the quantities, we may not assume that this relation is linear.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Unfortunately, the Spearman correlation does not indicate the type of relation that connects the two measured quanti- ties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We, therefore, perform a piecewise linear fit to the data obtained in this simulation, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We here allow for four segments which are optimized to reach the best approx- 19 imation by means of a piecewise linear and monotone function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We emphasize that larger numbers of segments yield similar approximations, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 1b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Performing this piecewise linear fit, we observe that the function is constant on some segments.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Based on the data dis- tribution, we conclude that this constant behavior is artificial and caused by the test set not being sufficiently versatile.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In particular, no quantitative conclusions can be drawn from the piecewise linear fit function for values S3 > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Therefore, from the geometry optimizations performed here, we can merely conjecture to raise a concern about the validity of CC calcu- lations performed for values of the S-diagnostics v(3) crit ≥ 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Based on the piecewise linear fit, S3 = 1 corresponds to an error larger than 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='035 a0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' A larger statistical investigation with a larger variety of molecules and basis set discretizations is delegated to future works.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We emphasize that this first estimation of vcrit is particularly pessimistic since the data set is not versatile enough to give a precise estimation of vcrit.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Indeed, in the subsequently performed simulations, we show a more refined estimation of vcrit that reveals v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, for S2, and S3, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 1: The maximal error in geometry optimization as a function of the S2 value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) The orange line corresponds to a piecewise linear fit to the data using four segments for the piecewise linear function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) Piecewise linear fits to the data with a varying number of segments.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Aside from CC-based simulations, we can also perform MP2 simulations, and use the obtained doubles amplitudes to compute the S-diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We find that the proposed 20 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='150 4-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='150 3-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='125 4-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 5-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='100 Max.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' diff.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 6-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='075 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='050 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='025 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 valueS-diagnostics correlate similarly well with MP2 based calculations as it does for CCSD, see Table 3 Table 3: Spearman correlation between S-diagnostics computed from MP2 doubles ampli- tudes and different errors in geometry optimization.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' ∆r(max) abs ∆r(ave) abs ∆r(ave) rel S1 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='55992, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000384) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='54569, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000577) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='49781, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='002006) S2 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='56687, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000313) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='54801, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000541) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='49858, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='001968) S3 (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='55992, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000384) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='54569, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000577) (0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='49781, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='002006) 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 Model Systems In this section we investigate the use of the proposed S-diagnostics for four model systems whose multi-reference character can be controlled by simple geometric change: (1) twisting ethylene, (2) the C2v insertion pathway for BeH2 (Be · · · H2)29, (3) the H4 model (transition from square to linear geometry)30 (4) the H4 model (symmetrically disturbed on a circle);' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' the computations are performed in cc-pVTZ basis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 Twisting ethylene We begin by numerically investigating the proposed S-diagnostics for ethylene twisted around the carbon–carbon bond, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Θ H C H H C H H C H C H H Figure 2: Depiction of the ethylene (C2H4) model with twist angle Θ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' At a twist angle of 90°, this system shows a strong multi-reference character.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This can be seen as follows: At the equilibrium geometry, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', in a planar geometry, the two carbon p orbitals are perpendicular to the molecular plane form bonding π and anti-bonding π∗ orbitals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In this geometry, the ground state doubly occupies the π-orbital.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' As we twist around 21 the carbon–carbon bond, the overlap between the two p orbitals decreases and becomes zero at 90°.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Therefore, at 90° the π and π∗ orbitals become degenerate and the π-bond is broken.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This (quasi) degeneracy can also be observed numerically by computing the HOMO-LUMO gap as a function of the twist angle, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3a.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Computing the corresponding ground state energy as a function of the twist angle, we observe the characteristic energy cusp at exactly 90°, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 3b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 3: (a) HOMO-LUMO gap of C2H4 as a function of the twist angle (b) RHF and RCCSD energies of C2H4 as a function of the twist angle Due to the quasi degeneracy around 90°, we compare the S-diagnostic with the MRI index suggested in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We clearly see the indication of the quasi degeneracy in the MRI index, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic also indicates the problematic region around 90°.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' By numerical comparison, we find that a cut-off value of v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 for S2 and S3, respectively, indicates the same region of quasi degeneracy as the MRI index.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 C2v insertion pathway for BeH2 Next we shall investigate the C2v insertion pathway for BeH2 (Be · · · H2)29.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The model represents an insertion of the Be atom into the H2 molecule.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The transformation coordinate connects the non-interacting subsystems (Be + H2) with the linear equilibrium state (H-Be- H), see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 5 22 HOMO-LUMO gap 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='45 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='40 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='35 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='30 0 1 2 3 Twist angle/ RadianGround state energy 78.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 RHF 78.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 CCSD 78.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 0 1 2 3 Twist angle/ Radian(a) (b) Figure 4: (a) The proposed S-diagnostics of C2H4 as a function of the twist angle, the dotted green and red horizontal lines correspond to v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) The previously suggested MRI of C2H4 as a function of the twist angle H Be H H Be H Figure 5: Depiction of the C2v insertion pathway for BeH2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 23 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S1 S2 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 S3 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Twist angle/ Radian1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 MRI 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Twist angle/ RadianWe here follow the insertion pathway outlined in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 29 and denote the position of the beryllium atom by X-position, where X-position equal to zero corresponds to the linear equilibrium state and X-position equal to five corresponds to the non-interacting subsystems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The transition state of this chemical transformation has a pronounced multi-reference char- acter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Another distinguishing feature of this model system is a change in the character of the dominating determinant in the wave function along the potential energy surface.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' There are two leading determinants in the wave function, each of which dominates in a certain region of the potential energy surface while both are quasi-degenerate around the transition-state geometry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This leads yields to discontinuities as can be seen in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 6a and 6b (a) (b) Figure 6: (a) HOMO-LUMO gap as a function of the X-position (b) RHF and RCCSD energies as a function of the X-position.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Due to the quasi-degeneracy that appears along the transition path, we again compare the proposed S-diagnostics with the MRI index suggested in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We clearly see the indication of the quasi degeneracy in the MRI index, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 7b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The region indicated by MRI< −0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='99 corresponds to x ∈ [2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='6, 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='05].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic also indicates a region where the CC computations are potentially unreliable.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' It is worth mentioning that choosing the critical values similar to the previous example, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, the predicted region corresponds to x ∈ [2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5, 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5] and x ∈ [2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5, 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25], respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In order to reproduce the same region of quasi-degeneracy as indicated by the MRI index, the critical values have 24 Ground state energy 15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 RHF Hartree CCSD 15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 一15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 Energyl 15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='6 15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 0 1 2 3 4 5 X-position/ aoHOMO-LUMO gap 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 0 2 3 4 5 1 X-position/ aoto be adjusted to v(2) crit = 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 and v(3) crit = 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 7: (a) shows the S-diagnostics, the dotted green, and red horizontal lines correspond to v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) shows the previously suggested MRI 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 H4 model (transition from square to linear geometry) Next, we shall investigate the proposed S-diagnostics applied to the H4 model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The H4 model is a standard transition model that allows steering the quasi-degeneracy using a single parameter, namely, the transition angle α where α = 0 corresponds to a square geometry and α = π/2 corresponds to a linear geometry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Following Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='30, we set a = 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 (a.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='u.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' ), see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' a a a a a α α a a a a Figure 8: Depiction of the H4 model undergoing the transition from a square geometry to linear geometry model by the angle α.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We see that as the transition angle α tends to zero, the HOMO-LUMO gap closes and the system shows signs of (quasi-) degeneracy, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 9a 25 So S S2 101 100 0 2 3 4 5 X-position/ ao1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 MRI 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0 1 2 3 4 5 X-position/ ao(a) (b) Figure 9: (a) HOMO-LUMO gap of H4 as a function of the transition angle (b) RHF, CCSD and FCI energies of H4 as a function of the transition angle Due to the quasi degeneracy near α = 0, we again compare the proposed S-diagnostics with the MRI index.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We clearly see the indication of the quasi degeneracy in the MRI index, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 10b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic also indicates the problematic region near zero transition angle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' A cut-off value of v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 results in S2 and S3, respectively, indicating the same region of quasi degeneracy as the MRI index.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 10: (a) The S-diagnostics of H4 as a function of the transition angle, the dotted green, and red horizontal lines correspond to v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) The previously suggested MRI of H4 as a function of the transition angle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For this small model Hamiltonian, it is moreover feasible to perform computations at the 26 HOMO-LUMO gap 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='45 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='40 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='35 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='30 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 Angle/ radianGround state energy RHF 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 CCSD FCI 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ radian6 So S1 5 S2 4 3 2 1 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 Angle/ radian1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 MRI 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 ¥1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 Angle/ radianFCI level of theory, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 12.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This comparison yields a quantitative comparison of error and S-diagnostic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Figure 11 Figure 12: The energy error of CCSD compared to the FCI reference energy using semi-log scales.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The area left of the vertical solid (black), dashed (green), and dotted-dashed (red) lines correspond to the regions where the MRI, S2, and S3 diagnostic indicate a potential failure of CCSD, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 H4 model (symmetrically disturbed on a circle) Another variant of the H4 model that is commonly employed to evaluate CC methods consists of four hydrogen atoms symmetrically distributed on a circle of radius R = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='738 ˚A31.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For small or large angles, the system resembles two H2 molecules that are reasonably well separated, but as the angle passes through 90, the four atoms form a square yielding a degenerate ground state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The exact energy is smooth as a function of the angle, but at the RHF level, we observe a cusp at 90, similar to the rotation of the carbon-carbon bond in ethylene.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We follow the system’s geometry configuration outlined in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='32, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 13.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We see that as the transition angle Θ tends to π/2 radians (90°), the HOMO-LUMO gap closes and the system shows signs of (quasi) degeneracy, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 14a Due to the quasi degeneracy near Θ = π/2 (90°), we again compare the proposed S- diagnostics with the MRI index.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We clearly see the indication of the quasi degeneracy in 27 Ground state energy error EcCSD - FFCI X 10-3 10-3 3 X 2 × 10-3 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ radianΘ Θ Figure 13: Depiction of the H4 model undergoing a symmetric disturbance on a circle modeled by the angle Θ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 14: (a) HOMO-LUMO gap of H4 as a function of the transition angle (b) RHF, RCCSD energies of H4 as a function of the transition angle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 28 HOMO-LUMO gap 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ RadianGround state energy RHF .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 CCSD FCI 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ Radianthe MRI index, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 15b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic also indicates the problematic region near zero transition angle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' A cut-off value of v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 results in S2 and S3, respectively, indicating the same region of quasi degeneracy as the MRI index.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 15: (a) The S-diagnostics of H4 as a function of the transition angle, the dotted green, and red horizontal lines correspond to v(2) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='9 and v(3) crit = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) The previously suggested MRI of H4 as a function of the transition angle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' For this small model Hamiltonian, it is moreover feasible to perform computations at the FCI level of theory, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 16.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This comparison reveals the variational collapse of the CCSD energy, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 16a, and moreover yields a quantitative comparison of error and S- diagnostic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The trusted region suggested by the S-diagnostic corresponds to a CCSD energy error smaller than 2 · 10−4 a.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='u.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' which is below the chemical accuracy threshold.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Since the simulations performed in the previous section suggest that the previously used T1, D1, and D2 diagnostics are uncorrelated, or merely weakly correlated, we do not report their performance here.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The computations showing the performance of the T1, D1, and D2 diagnostics can be found in the Appendix, see Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 26 to 29 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3 Transition metal complexes In this section we investigate three square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Transition metal complexes are in general considered to be strongly corre- 29 S1 15 S2 S3 10 5 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 Angle/ RadianMRI 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 Angle/ Radian(a) (b) Figure 16: (a) The energy error of CCSD compared to the FCI reference energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Note that in the region of 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='3-1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='8 radians the CCSD energy is lower than the FCI reference energy, which indicates the variational collapse of the CCSD energy in this region.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) The absolute value of the energy error of CCSD compared to the FCI reference energy using semi-log scales.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The area between the vertical solid (black), dashed (green), and dotted-dashed (red) lines correspond to the regions where the MRI, S2, and S3 diagnostic indicate a potential failure of CCSD, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' lated systems and complete active space self-consistent field (CASSCF) theory is commonly applied, with multi-reference perturbation or truncated CI corrections for dynamic correla- tion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' However, as shown in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 7, the single reference CC method performs very well despite the large D1 diagnostic value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We use these systems to scrutinize the proposed S-diagnostics for larger systems that are known to be misleadingly diagnosed by the D1 diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Similar to Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 7, we perform the simulation of [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+ in 6-31G basis using UHF and ROHF as reference states.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Also, He, Ne, and Ar cores were frozen in the nitrogen, chlorine, and copper atoms, respectively, resulting in 41 electrons in 50, 66, and 74 orbitals for the [CuCl4]2−, [Cu(H2O)4]2+, and [Cu(NH3)4]2+ molecules, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We list the ground state energies obtained at the mean-field level of theory and the corresponding CCSD results in Table 4;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' we moreover list the HOMO-LUMO gap which enters in the S-diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The results in Table 4 show that UHF and ROHF calculations predict similar energy values.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Moreover, using the UHF, or ROHF reference state results in similar CCSD energy 30 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000 Iartree 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='002 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='004 Energyl 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='006 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='008 EcOSD -EFCI 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ Radian10-2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 10 IEcCSD -EFCll 10-5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Angle/ RadianTable 4: Energies values and HOMO-LUMO gap obtained with UHF, ROHF, and UCCSD calculations given the reference state from UHF and ROHF, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' UHF γUHF UCCSD RHOF γROHF UCCSD [CuCl4]2− 3476.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='764 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='453 3477.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='119 3476.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='763 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='146 3477.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='119 [Cu(NH3)4]2+ 1862.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='977 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='564 1863.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='663 1862.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='976 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='351 1863.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='663 [Cu(H2O)4]2+ 1942.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='225 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='677 1942.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='914 1942.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='224 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='340 1942.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='914 values.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' It is worth noticing that ROHF yields a generally smaller HOMO-LUMO gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Since the performed CCSD calculations differ in their reference, we can compute the S-diagnostics for both sets of calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The results obtained from a UHF and ROHF reference are listed in Table 5 and in Table 6, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Table 5: S-diagnostics obtained for the three square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+ in spin unrestricted formulation with UHF reference.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' S1 S2 S3 T1 D1 D2 [CuCl4]2− 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='208 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='409 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='406 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='019 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='158 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='110 [Cu(NH3)4]2+ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='203 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='403 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='398 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='014 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='130 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='121 [Cu(H2O)4]2+ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='155 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='308 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='305 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='011 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='072 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='116 We see that all S-diagnostic variants suggest that the CCSD calculations were successful, and do not require additional numerical confirmation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This is opposed to the D1 diagnostics, which aligns with the results reported in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Table 6: S-diagnostics obtained for the three square-planar copper complexes [CuCl4]2−, [Cu(NH3)4]2+, and [Cu(H2O)4]2+ in spin unrestricted formulation with ROHF reference.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' S0 S1 S2 T1 D1 D2 [CuCl4]2− 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='645 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='285 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='27 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='020 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='167 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='110 [Cu(NH3)4]2+ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='326 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='646 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='638 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='015 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='139 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='121 [Cu(H2O)4]2+ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='309 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='614 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='607 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='011 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='077 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='116 Similar to the results in Table 5, we see that all variants of the S-diagnostic suggest that the CCSD calculations were successful.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' However, it is worth noticing that the S-diagnostic values have increased compared to the values reported in Table 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 31 5 Conclusion In this article, we proposed three a posteriori diagnostics for single-reference CC calcula- tions which we called S-diagnostics, due to their origin in the strong monotonicity analysis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Contrary to previously suggested CC diagnostics, the S-diagnostics are motivated by math- ematical principles that have been used to analyze CC methods of different flavors in the past9,15,18,19,33.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We performed a set of geometry optimizations for small to medium-sized molecules in order to reveal the correlation between the S-diagnostics and the error in geometry from CCSD calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The test set comprised all molecules that were used in previous articles concerning CC diagnostics3–6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Our investigations revealed that the S-diagnostics correlate well and with large statistical relevance with different errors in geometry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This yields a first estimate of the critical values for the S-diagnostics beyond which the computational results should be confirmed using further and more careful numerical investigations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The observed correlation between the S-diagnostics and the different errors in geometry are comparable to the recently suggested EEN index8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' A heuristic test revealed that the S-diagnostics also correlate well and with large statistical relevance with the error in geometry at the MP2 level of theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This suggests that the S-diagnostics can also be used as an a posteriori diagnostic for MP2 calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Our numerical simulations moreover showed that diagnostics based on single excitation cluster amplitudes, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', D1 and T1, are uncorrelated to errors in geometry optimization.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Following we investigated the S-diagnostics for transition state models that undergo a transition from a region in which CC calculations are reliable to a regime where the CC cal- culations require further numerical investigations—in this case, due to (quasi-) degeneracy of the ground state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The S-diagnostic detects the corresponding regions of (quasi-) degeneracy well.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' In fact, its performance is comparable to the recently suggested MRI indicator—an a posteriori indicator for multi-reference character8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The last set of numerical simulations targeted transition metal complexes which have 32 recently been carefully benchmarked7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' The previously performed benchmark calculations revealed that diagnostics based on single excitation amplitudes severely misdiagnose the performance of CCSD for these transition metal complexes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Our computations confirm this, and moreover, show that the S-diagnostic correctly confirms the accuracy of the CCSD results outlined in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' These carefully performed numerical investigations suggest that the S-diagnostic is a promising candidate for an a posteriori diagnostic for single-reference CC and MP2 calcu- lations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' To further confirm this, benchmarks on a larger set of molecules will be performed in the future.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Moreover, since the mathematical analysis of the single-reference CC method generalizes to periodic systems as well, we believe that the S-diagnostic can moreover be applied to simulations of solids at the CC and MP2 level of theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Throughout our numerical investigations, we observe a subpar performance of the T1 and D1 diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' This suggests that those diagnostics should once and for all be removed as a posteriori diagnostic tools for single-reference CC calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Acknowledgement This work was partially supported by the Air Force Office of Scientific Research under the award number FA9550-18-1-0095 and by the Simons Targeted Grants in Mathematics and Physical Sciences on Moir´e Materials Magic (F.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='F.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' ), by the Peder Sather Grant Program (A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='L.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', F.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='F.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=',), and by the Research Council of Norway (A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='L.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=', M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=') through Project No.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 287906 (CCerror) and its Centres of Excellence scheme (Hylleraas Centre) Project No.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 262695.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Some of the calculations were performed on resources provided by Sigma2 - the National Infrastructure for High Performance Computing and Data Storage in Norway (Project No.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' NN4654K).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We also want to thank Prof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Lin Lin, Prof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Trygve Helgaker, Prof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Anna Krylov, Dr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Pavel Pokhilko, Dr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Tanner P.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Culpitt, Dr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Laurens Peters, and Dr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Tilmann Bodenstein for fruitful discussions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 33 References (1) Bartlett, R.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=';' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Musial, M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Coupled-cluster theory in quantum chemistry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Rev.' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=';' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Kvaal, S.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Analysis of the tailored coupled-cluster method in quantum chemistry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' SIAM J.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Numer.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' Anal.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 2019, 57, 2579–2607.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 37 6 Appendix 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 Correlation in Geometry Optimization Since we can correlate three S-diagnostic variants with three error measures, we can in principle perform the piecewise linear fit that is presented in Section on Correlation in Geometry Optimization for nine different scenarios.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' We here present the piecewise linear fits which were not addressed in the above article.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='1 S1-diagnostic Correlations (a) (b) Figure 17: The averaged relative error in geometry optimization as a function of the S1 value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) The orange line corresponds to a piecewise linear fit to the data using four segments for the piecewise linear function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) Piecewise linear fits to the data with a varying number of segments.' 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error in geometry optimization as a function of the S2 value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) The orange line corresponds to a piecewise linear fit to the data using four segments for the piecewise linear function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) Piecewise linear fits to the data with a varying number of segments.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 22: The averaged absolute error in geometry optimization as a function of the S2 value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) The orange line corresponds to a piecewise linear fit to the data using four segments for the 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value(a) (b) Figure 24: The maximal absolute error in geometry optimization as a function of the S3 value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) The orange line corresponds to a piecewise linear fit to the data using four segments for the piecewise linear function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (b) Piecewise linear fits to the data with a varying number of segments.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 25: The averaged absolute error in geometry optimization as a function of the S3 value.' metadata={'source': 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+page_content='125 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='100 Max.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' diff.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='075 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='050 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='025 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='150 3-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='125 4-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 5-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='100 Max.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' diff.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 6-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='075 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='050 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='025 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='000 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value0.' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='02 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='01 4-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='06 ★ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='05 Ave.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' abs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' diff.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='04 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='03 3-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='02 4-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 5-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='01 6-seg.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S3 value6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='2 Transition State Models Here we shall compare the performance of the S-diagnostics and the previously used T1, D1, and D2 diagnostics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content=' (a) (b) Figure 26: (a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 diagnostics (a) (b) Figure 27: (a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 diagnostics 44 So S S2 101 100 0 2 3 4 5 X-position/ ao10-1 T1 D1 D2 10-2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Twist angle/ Radian100 T1 D1 D2 10-1 10-2 0 2 3 4 5 1 X-position/ ao3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 S1 S2 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 S3 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='5 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='0 Twist angle/ Radian(a) (b) Figure 28: (a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 diagnostics (a) (b) Figure 29: (a) shows the S-diagnostics (b) shows the previously suggested T1, D1 and D2 diagnostics 45 6 So S1 5 S2 4 3 2 1 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 0.' metadata={'source': 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metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='50 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='75 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 Angle/ RadianT1 D1 D: 10- 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='00 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/39FIT4oBgHgl3EQf6SuL/content/2301.11393v1.pdf'} +page_content='25 0.' 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Gandus,1, ∗ D. Passerone,2 R. Stadler,3 M. Luisier,1 and A. Valli3, 4, † +1Integrated Systems Laboratory, ETH Z¨urich, Gloriastrasse 35, 8092 Z¨urich, Switzerland +2Empa, Swiss Federal Laboratories for Materials Science and Technology, +¨Uberlandstrasse 129, CH-8600, D¨ubendorf, Switzerland +3Institute for Theoretical Physics, Vienna University of Technology, +Wiedner Hauptstrasse 8-10, A-1040 Vienna, Austria +4Department of Theoretical Physics, Institute of Physics, +Budapest University of Technology and Economics, M¨uegyetem rkp. 3., H-1111 Budapest, Hungary +Strongly correlated physics arises due to electron-electron scattering within partially-filled or- +bitals, and in this perspective, organic molecules in open-shell configuration are good candidates to +exhibit many-body effects. With a focus on neutral organic radicals with a molecular orbital host- +ing a single unpaired electron (SOMO) we investigate many-body effects on electron transport in a +single-molecule junction setup. Within a combination of density functional theory and many-body +techniques, we perform numerical simulations for an effective model for which all the parameters, +including the Coulomb tensor, are derived ab-initio. We demonstrate that the SOMO resonance is +prone towards splitting, and identify a giant electronic scattering rate as the driving many-body +mechanism, akin to a Mott metal-to-insulator transition. The nature of the splitting, and thus of +the resulting gap, as well as the spatial distribution of the SOMO and its coupling to the electrodes, +have dramatic effects on the transport properties of the junction. We argue that the phenomenon +and the underlying microscopic mechanism are general, and apply to a wide family of open-shell +molecular systems. +I. +INTRODUCTION +Strongly correlated electronic physics arises in par- +tially occupied orbitals in the presence of competing en- +ergy scales. +Due to the Coulomb repulsion, electrons +display a collective behavior, leading to the breakdown +of the single-particle picture and the emergence of com- +plex quantum phenomena. +Electronic correlations are +also enhanced due to spatial confinement effects in low- +dimensional and nanoscopic systems. While in solid-state +physics the concept of a “strongly-correlated metal” is +well-established, its analog for molecules is not obvious. +In chemistry, the majority of stable organic molecules +have closed-shell electronic configurations, and electrons +are paired in delocalized molecular orbitals (MOs) that +are either completely filled or empty. The energy differ- +ence between the frontier MOs, i.e., the highest occupied +(HOMO) and the lowest unoccupied (LUMO) orbitals +defines the spectral gap. In particular, π-conjugated sys- +tems display a wide HOMO-LUMO gap (∆ ∼ eV) which +is controlled by the overlap of neighboring pz orbitals. A +molecular system in an open-shell configuration (radical) +is characterized by unpaired valence electrons residing +in non-bonding singly-occupied MOs (SOMOs) found at +intermediate energies between HOMO and LUMO. Rad- +icals can form by breaking bonds or by adding/removing +electrons (e.g., in photoinduced processes) and are inter- +mediate products of chemical reactions. +While open-shell configurations are typically associ- +ated with high chemical reactivity, there exist also species +∗ gandusgui@gmail.com +† valli.angelo@ttk.bme.hu +of relatively stable radicals, which possess interesting +electronic, magnetic, and optical functionalities that are +relevant to technological applications ranging from next- +generation spintronics to quantum information [1–3]. +Tremendous advances in the synthesis and character- +ization of organic radicals triggered recent experimen- +tal studies with organic species that are stable enough +to be trapped in break-junctions [4, 5] or investigated +with scanning tunneling spectroscopy [6–9], which fu- +eled a revival of interest in the molecular Kondo ef- +fect [4, 6–12]. +There is a growing experimental and +theoretical effort to unravel how many-body effects can +dramatically influence electronic and transport proper- +ties in light of technological applications. +In the con- +text of molecular electronics, noteworthy organic radicals +include triphenylmethyl [4, 5, 12], Blatter radical [13], +polyacetylene [14, 15], benzyl [16, 17], together with the +whole family of polycyclic hydrocarbons with non-Kekul`e +structure [7, 18–20]. Molecular organic frameworks with +transition-metal centers (e.g., iron-porphyrin) are also +typically open-shell, and have been recently suggested +as molecular transistors [21, 22]. +From the theoretical point of view, in wide-gap semi- +conductors, the electron-electron scattering rate is low +due to the lack of electronic states at the Fermi energy. +The accuracy of ab-inito prediction of the gap is a long- +standing issue [23], and numerical simulations for insula- +tors [24, 25] and molecules [25–32] predict a many-body +renormalization of the spectral gap. However, these ef- +fects do not change qualitatively the transport proper- +ties. In open-shell configurations instead, it can be ex- +pected that electron-electron scattering within the par- +tially filled SOMO and many-body effects have a promi- +nent role. +arXiv:2301.00282v1 [cond-mat.str-el] 31 Dec 2022 + +2 +In computational quantum chemistry, +it is well- +established that open-shell molecular configurations re- +quire careful treatment (see, e.g., [33] for an overview) +but the accuracy of quantum chemical methods comes +at a high numerical cost. Hence, we recently witnessed +significant advances in developing alternative simulation +schemes, that are suitable to describe complex devices +relevant to molecular electronics [11, 34, 35]. In the en- +deavor to achieve predictive power and allow for a quan- +titative comparison with experiments, a suitable method +should be high-throughput — i.e., scalable and automa- +tized as much as possible, and able to describe a real- +istic chemical environment and many-body correlations +within an ab-initio framework. This would allow a coop- +erative effort between theory and experiments, and pave +the path to future breakthroughs for next-generation +quantum technologies. +II. +SCOPE OF THIS WORK +The scope of this work is to investigate the emergence +of strongly correlated electron physics in the electronic +and transport properties of single-molecule junctions. +To this end, we have developed a comprehensive nu- +merical workflow that combines density functional theory +(DFT) with quantum field theoretical methods, and it is +able to address the complexity of a realistic chemical en- +vironment as well as electronic correlation effects beyond +the single-particle picture within an ab-initio framework. +With both aspects taken into account, we are able to un- +ravel the origin of many-body transport effects in single- +molecule junctions. +The art of combining ab-initio and many-body com- +putational schemes lies in a transformation from non- +orthogonal atomic orbitals (AOs) to recently introduced +local orbitals (LOs) [36]. The LOs are by construction +orthogonal within the same atom and localized in space. +They take over the symmetries of the original AOs, while +inheriting the information of the environment. This al- +lows to represent the electronic wavefunction in a region +of the spectrum close to the Fermi energy with a mini- +mal set of orbitals, making them an ideal basis for many- +body calculations. So far, LOs have been employed in the +context of DFT [36]. In what follows, we also evaluate +the Coulomb integrals that describe the electron-electron +repulsion in the LO basis, and thus map to the origi- +nal Hamiltonian onto an effective many-body problem, +which we can feasibly solve with appropriate numerical +methods. This recipe is particularly suitable to address +strong correlation effects in the transport properties of +molecular junctions. +In terms of applications, we focus on molecular break- +junctions in which the central molecule bridging the elec- +trodes is in an open-shell configuration, which are strong +candidates to manifest many-body effects. Specifically, +we select a linear and a cyclic molecular bridge, i.e., a +polyene radical, and a benzene molecule substituted with +a methylene (CH2) radical group. While both molecules +are π-radicals with one electron in the SOMO, we show +that many-body effects bring out profound differences. +We identify the fingerprint of strong electronic correla- +tions in the splitting of the SOMO resonance. The details +of the splitting and the spatial distribution of the SOMO +on the molecular backbone have dramatic consequences +on the transport properties of the junction. +Finally, we demonstrate that such a splitting cannot +be obtained with less sophisticated techniques, such as +many-body perturbation theory. We argue that this phe- +nomenon and the underlying microscopic mechanism are +general, and apply to a wide family of open-shell molec- +ular systems. +III. +METHODS +A. +Local orbitals and low-energy models +The LOs method [36] is a transformation-based ap- +proach that aims at retrieving hydrogen-like orbitals for +atoms in molecules and solids. By construction, LOs are +locally orthogonal on each atom. The starting point is a +DFT calculation in an AOs basis set. The Hilbert space +H is then spanned by a finite set of non-orthogonal or- +bitals {|i⟩}, i.e., with a overlap matrix ⟨i|j⟩ = (S)ij ̸= δij +for |i⟩ , |j⟩ ∈ H. A set of LOs {|m⟩} ∈ M ⊆ H can be +obtained for any atom α in subspace M by a subdiago- +nalization of the corresponding Hamiltonian sub-block +Hα |m⟩ = ϵmSα |m⟩ +(1) +The LOs are then linear combinations of AOs and are +by definition orthogonal on each atom. This allows for a +more natural physical interpretation of the LOs as atomic +orbitals [36]. +In order to obtain an ab-initio effective +model, we formally separate the Hilbert space into an ac- +tive space (A) and an environment (E). The active space +consists of a subset of LOs {|a⟩} = A ⊆ M which are ex- +pected to describe the relevant physics close to the Fermi +energy, and at the same time can be efficiently treated +within quantum many-body techniques. +Insytead, the +environment consists of all the remaining LOs and AOs, +i.e., {|e⟩} ∈ E ≡ H \A. Embedding the active space into +the environment ensures that the effective model pre- +serves all information of the original single-particle DFT +Hamiltonian [36]. Finally, it is convenient to perform a +L¨owdin orthogonalization [37] of the LO {|a⟩} states and +redefine the A subspace in terms of this new orthonormal +basis set with elements +��a⊥� += +� +a +(S−1/2)aa⊥ |a⟩ . +(2) +Since the overlap between LOs on different atoms is typi- +cally low, i.e., (S)ij ≪ 1, the L¨owdin orthonormalization +of the active space results only in a weak deformation of +the original LOs, which preserves their atomic-like sym- +metry. + +3 +In practice, the LO low-energy model is constructed +embedding the active subspace into the environment +through a downfolding procedure [38, 39]. Taking into +account the non-orthogonality between the A and E sub- +spaces [34], we write the Green’s function projected onto +the A subspace as +GA(z) = S−1 +A SAHGH(z)SHAS−1 +A , +(3) +where z = E + iη is a complex energy with an infinites- +imal shift η → 0+. GH denotes the Green’s function of +the full Hilbert space, and SAH the overlap matrix be- +tween orbitals +��a⊥� +∈ A and orbitals |i⟩ ∈ H, while the +overlap SA between the +��a⊥� +states is, by construction, +the identity matrix and will be omitted in what follows +for notational simplicity. The effect of the environment +on the A subspace is described by the hybridization func- +tion +∆A(z) = g−1 +A (z) − GA(z)−1, +(4) +where +gA = +� +z − HA +�−1 +(5) +is Green’s function of the isolated A subspace. Rewriting +GA in terms of ∆A and using the definition of gA yields +GA(z) = +� +z − HA − ∆A(z) +�−1. +(6) +Then, GA can be seen as the resolvent of an effective +A subspace renormalized by the environment through a +dynamical hybridization. The Green’s function describes +the physics of the whole system, projected onto a sub- +space. +For a single-particle Hamiltonian, the partition above +is arbitrary, and the procedure remains valid indepen- +dently of the subset of LOs included in the active space. +In the context of π-conjugated organic molecules, the +projection onto a single pz LO per C atom (and pos- +sibly other species such as N or S) is usually sufficient +to achieve a faithful representation of the frontier MOs, +and hence suitable to describe the physics close to the +Fermi energy [36]. The possibility of considering a re- +stricted subset of LOs in the effective model is of pivotal +importance in view of performing computationally-heavy +many-body simulations. +B. +cRPA and ab-initio Coulomb parameters +In order to derive the electronic interaction parameters +in the A subspace beyond the semi-local density approx- +imations, we employ the constrained Random Phase Ap- +proximation (cRPA) [34, 40, 41]. Within the cRPA, we +select a region R ⊃ A where the formation of electron- +hole pairs is expected to screen the Coulomb interaction +between the A electrons. Because of the strong local na- +ture of the LOs, it is sufficient that R comprises the A +subspace and few atoms nearby. Defining GR to be the +Green’s function projected onto the R subspace in anal- +ogy with Eq. (3), the screened Coulomb interaction at +the RPA level is given by +WR = +� +I − VRPR +�−1VR, +(7) +where VR is the bare Coulomb interaction +(VR)ij,kl = +� +dr +� +dr′ψi (r)ψ∗ +j (r) +e2 +|r − r′|ψ∗ +k(r′)ψl (r′), +(8) +being ψi(r) the orbitals in the R region, and PR is the +static component of the polarizability +(PR)ij,kl = −2i +� dz′ +2π Gik(−z′)Glj(z′). +(9) +The projection of WR onto the A subspace then yields +the static screened interaction WA. Since we aim at per- +forming many-body simulations of the effective model, +we need to partially unscreen the Coulomb parameters, +eliminating from WA the screening channels arising from +A-A transitions included in PR, which will be treated at +a more sophisticated level of theory. This can be done +according to the following prescription +UA = WA +� +I + PAWA +�−1, +(10) +using the polarization PA of the A electrons obtained +from GA similarly to Eq. (9). The matrix elements in +UA can therefore be regarded as the effective (partially +screened) Coulomb parameters. +C. +Solutions of the low-energy models +The Green’s function of Eq. (6), together with the in- +teractions parameters of Eq. (10), define a low-energy +model which can be solved with many-body techniques. +Here, we propose two somewhat complementary strate- +gies, i.e., exact diagonalization (ED) and the dynamical +mean-field theory (DMFT) [42] as implemented within its +real-space generalization (R-DMFT) for inhomogeneous +systems [43–47]. +1. +Exact diagonalization +The ED technique requires a Hamiltonian formulation +of the effective model. +If the states of the active and +embedding subspaces are energetically well-separated, it +is possible to neglect the dynamical character of the hy- +bridization function and construct an effective Hamilto- +nian as +Heff +A = HA + ∆A(z = 0). +(11) + +4 +Including the screened Coulomb interaction, the model +Hamiltonian then reads +H = +� +ij,σ +� +Heff +A − Hdc +A +� +ijc† +iσcjσ ++ 1 +2 +� +ijkl,σσ′ +� +UA +� +ij,klc† +jσc† +kσ′clσ′ciσ, +(12) +where c(†) +iσ denote the annihilation (creation) operator of +an electron at LO i with spin σ, and the double-counting +correction Hdc +A accounts for the interaction already in- +cluded at the mean-field level by DFT (see Sec. III D). +The diagonalization of this Hamiltonian yields the many- +body spectrum (eigenstates and eigenvalues) which can +be used to construct the Green’s function GED +A +through +its Lehmann representation [48]. The many-body self- +energy is obtained from the Dyson equation +ΣED +A (z) = z − Heff +A − +� +GED +A (z) +�−1, +(13) +and it describes both local Σii and non-local Σi̸=j elec- +tronic correlations in the LO basis. An obvious advan- +tage of ED over, e.g., quantum Monte Carlo [49], is that it +provides direct access to retarded self-energy and Green’s +function, and hence the electron transmission function, +without the need to perform an analytic continuation +numerically, which is an intrinsically ill-defined prob- +lem [50]. Note that within ED, we obtain a many-body +self-energy which is, by construction, spin-independent, +i.e., Σσ +ij = Σ¯σ +ij since Heff +A follows from a restricted DFT +calculation. +2. +Real-space DMFT +The idea behind R-DMFT consists of mapping a many- +body problem onto a set of auxiliary Anderson impurity +models (AIMs) —one for each atom α— described by the +projected Green’s function [44–46] +gσ +α(z) = (Gσ +A(z))α . +(14) +The solution of AIM α (see details below) yields a local +many-body self-energy Σσ +α(z), so that the self-energy of +the A subspace is block diagonal in the atomic subspaces +Σσ +A(z) = diag( +� +Σσ +α(z) | α ∈ A +� +). +(15) +The set of auxiliary AIMs are coupled by the Dyson equa- +tion +Gσ +A(z) = +� +z+µ−(HA−Hdc +A )−∆A(z)−Σσ +A(z) +�−1, (16) +where the Green’s function Gσ +A includes the many-body +self-energy and the double-counting correction, and the +chemical potential µ is determined to preserve the DFT +occupation of the A subspace. Finally, Eqs. (14-16) are +iterated self-consistently starting with an initial guess +(typically Σσ +A = 0) until convergence. +More in detail, in AIM α the impurity electrons inter- +act through a screened local Coulomb repulsion projected +onto atom α, i.e., Uα = (UA)ij,kl | i, j, k, l ∈ α [51]. +Moreover, the impurity is embedded in a self-consistent +bath of non-interacting electrons, which describes the rest +of the electronic system, encoded in the hybridization +function +∆σ +α(z) = z +µ−(Hα −Hdc +α )− +� +gσ +α(z) +�−1 −Σσ +α(z). (17) +Also within R-DMFT, it is convenient to use ED to +solve the AIMs to have direct access to retarded func- +tions. This requires to discretize the hybridization func- +tion with a finite number of bath orbitals, described by +orbital energies ϵσ +m and hopping parameters to the impu- +rity tσ +mi. The hybridization parameters together with the +local Coulomb blocks Uα, define the AIM Hamiltonian +HAIM = +� +ij,σ +� +Hα − Hdc +α +� +ijc† +iσcjσ − µ +� +iσ +c† +iσciσ ++ +� +m,σ +ϵσ +ma† +mσamσ + +� +mi,σ +tσ +mi(a† +mσciσ + c† +iσamσ) ++ 1 +2 +� +ijkl,σσ′ +� +Uα +� +ij,klc† +jσc† +kσ′clσ′ciσ, +(18) +where c(†) +iσ and a(†) +mσ denote the annihilation (creation) +operator of an electron at LO i with spin σ, or at bath +orbital m with spin σ, respectively. Once the many-body +spectrum of the AIM is known, the local self-energy is +evaluated in terms of the local Green’s function Gσ +α as +Σσ +α(z) = +� +gσ +α(z) +�−1 − +� +Gσ +α(z) +�−1. +(19) +At convergence, we define the R-DMFT self-energy as +Σσ,R−DMFT +A +(z) = Σσ +A(z) − Hdc +A − µ, +(20) +so that it contains all shifts related to the density matrix. +In terms of approximations, R-DMFT takes into ac- +count local electronic correlations (Σii), neglecting non- +local correlations (i.e., Σij = 0), but some degree of +non-locality is retained as Σii ̸= Σjj, and the AIMs +are coupled through the self-consistent Dyson equation. +Therefore, R-DMFT is suitable to treat intrinsically in- +homogeneous systems [26, 46, 47, 52–54]. +Moreover, +R-DMFT is considerably lighter in terms of computa- +tional complexity with respect to the direct ED of the +original many-body problem and can treat systems with +hundreds of atoms in the active space, inaccessible to +ED [26, 44, 46]. Finally, besides the restricted solution +Σσ +A = Σ¯σ +A, within R-DMFT we also have the freedom +of breaking the spin degeneracy, and describe magnetic +solutions [28, 30, 31, 44, 55]. +D. +Double-counting correction +The double-counting (DC) correction Hdc +A +aims at +eliminating the correlations in the A subspace included + +5 +at a mean-field level by DFT, which are instead to be +included in a more sophisticated level of theory within +the many-body simulations. Unfortunately, an analyt- +ical expression of the correlation effects accounted for +within DFT is unknown, and therefore several approxi- +mations [47, 56–58] have been developed in the context of +DFT+DMFT [59, 60] or DFT+U [61, 62]. For a single- +orbital AIM (as in the case of the simulations in this +work) the DC correction can be reasonably approximated +within the fully localized limit (FFL) [57, 63–65] +� +Hdc +A +� +ii = (UA)ii,ii +� +nDFT +i +− 1 +2 +� +, +(21) +where nDFT +i +is the DFT occupation of orbital i. Hence, +we use this form of DC for the R-DMFT calculations. +However, there’s no established method for the general +case of multi-site and multi-orbital Coulomb interaction +as is the case for ED. Here, we propose a self-consistent +procedure in which a set of local parameters is optimized +to fulfill the condition +(ΣA)ii(|z| → ∞) = 0, +(22) +This approach ensures that the electronic properties at +high-energies, which are well described by a one-particle +approach, are restored to the DFT level. +E. +Correlated quantum transport +To describe the electronic transport properties, we use +the non-equilibrium Green’s function (NEGF) approach +[66, 67]. +In NEGF, we identify a device region sur- +rounding the nanojunction’s constriction and downfold +the leads’ electrons by virtue of an efficient recursive al- +gorithm [68]. The corresponding Green’s function reads +GD(z) = +� +zSD−HD−ΣL(z)−ΣR(z)−ΣD(z) +�−1, (23) +where ΣL(R) is the self-energy describing the electrons in +the left (right) electrodes, and +ΣD(z) = SDAS−1 +A ΣA(z)S−1 +A SAD +(24) +projects the many-body self-energy of the active space +ΣA (i.e., obtained within either ED or R-DMFT) onto +the device region. +Following the generalization of the +Landauer formula proposed by Meir and Wingreen [69], +the conductance is given by +G = G0T(EF ), +(25) +where G0 = e2/h is the conductance quantum, and the +transmission function is computed as +T(E) = Tr[GD(z)ΓL(z)G† +D(z)ΓR(z)], +(26) +with ΓL(R) the anti-hermitian part of ΣL(R) +ΓL(R) = i +� +ΣL(R) − Σ† +L(R) +� +. +(27) +While Eqs. (25)−(27) neglect the incoherent contribu- +tions (i.e., due to inelastic scattering) to the transmis- +sion that arises from the many-body self-energy [35, 70– +74], they provide a good approximation of the low-bias +transport properties, even in the presence of strong cor- +relations within the A subspace [34, 69]. +active +molecule +screening +scattering region +(a) +(b) +tip layer +slab +pz LOs +FIG. 1. +(a) Schematics of the scattering region of the single- +molecule junction, consisting of the molecular bridge and the +Au electrodes. The screening region (R) and the active space +within the molecule (A) are highlighted. (b) Detailed struc- +ture of pentadienyl and benzyl radical, and Au electrodes. For +pentadienyl, we also show schematically the mapping onto the +C and N pz LOs. +IV. +COMPUTATIONAL DETAILS +The structures were set up with the atomic simula- +tion environment (ASE) software package [75] and the +DFT calculations were performed with the GPAW pack- +age [76–78]. We performed a geometry optimization, and +the atomic positions were relaxed until the forces on each +atom were below 0.001 Hartree/Bohr−1 (≈ 0.05 eV/˚A). +For converging the electron density, we used an LCAO +double-ζ basis set, with a grid spacing of 0.2 ˚A, and +the Perdew–Burke–Ernzerhof exchange-correlation func- +tional [79]. For the electron transport calculations, we +followed the method described in [68]. The leads were +modeled by a three-layer-thick Au(111) slab sampled +with a 3×1×1 k-point grid along the transport direction. +The scattering region also includes one Au slab and an +additional Au layer terminated by a four-atom Au tip, +to which the molecule anchoring groups are attached. +For all structures, the A subspace describing the effec- +tive model is composed of the pz LOs of the C and N +atoms of the molecular bridge, while the R subspace for +the cRPA calculation of the screened interaction includes +the molecule and also extends to the Au atoms of the tip +(see Fig. 1). + +6 +V. +INIGHTS FROM AB-INITIO SIMULATIONS +In order to understand the many-body effects arising +in the open-shell configuration, it is useful to recall some +chemical and electronic properties of the pentadienyl and +benzyl radicals, and how those are reflected by ab-initio +simulations. +In particular, we look at the spatial dis- +tribution of the SOMO and at the ab-initio Coulomb +parameters projected onto the LOs of the active space. +A. +Structure of the SOMO +The pentadienyl radical (C5H7) is a linear molecule, +and the shortest polyene radical after allyl. It has three +resonant structures. In each structure, the unpaired elec- +tron is hosted on one of the odd C atoms. +The delo- +calization of the unpaired electron along the molecular +backbone contributes to the thermodynamical stability +of the molecule [80, 81]. +The structure we consider is +obtained by substituting a hydrogen atom at each end +of the chain by an amino group. By diagonalization of +the AOs Hamiltonian in the subspace of the molecule, +we find an eigenvalue just above the Fermi energy, corre- +sponding to a partially occupied MO (i.e., the SOMO). +The pentadienyl resonant structures and the projection +of the SOMO onto the pz LOs of the active space are +shown in Figs. 2(a,b), respectively. The SOMO reflects +the resonant structures, with the largest projection on +the odd- and nodes at even- C atoms. It also displays a +significant projection onto the anchoring groups, suggest- +ing a strong coupling to the electrodes in the junction. +The benzene molecule (C6H6) is a cyclic aromatic hy- +brocarbon and the archetypical building block for molec- +ular electronics. For our analysis, we consider a related +compound, the benzyl radical (C6H5CH2−), which is ob- +tained by substituting a hydrogen atom with a methylene +(CH2) group. The benzyl radical is also stabilized by res- +onance but, unlike pentadyenil, in both resonant struc- +tures the unpaired electron is hosted on the benzylic C, +as illustrated in Fig. 2(c). We focus on the meta con- +figuration, in which the amino groups are substituted at +the 1,3-positions of the aromatic ring, while the methy- +lene group is substituted in the 5-position, i.e., along the +longer branch of the ring (see also Fig. 1). As expected, +we find an eigenvalue lying at the Fermi energy, corre- +sponding to the SOMO shown in Fig. 2(d). The SOMO +displays the largest projection at the pz LO of the ben- +zylic C atom and displays nodes at every other C (simi- +larly to pentadienyl). However, it does not extend to the +anchoring groups, thus suggesting a weak coupling to the +electrodes. +B. +Coulomb parameters in the LO basis +The partially screened Coulomb matrix projected onto +the LO basis of the active space Uij = (UA)ij is shown in +(c) +(a) +SOMO (pz LOs) +SOMO (pz LOs) +(b) +(d) +FIG. 2. Resonances and SOMO isosurface (from LOs pz) of +pentadienyl (a,b) and benzyl (c,d) radicals. In pentadienyl, +the unpaired electron is hosted by one of the odd C of the +polyene chain, which also display the largest contributions in +the isosurface, while the even C correspond to nodes. In both +benzyl resonant structures, the unpaired electron is hosted +by the benzylic C, and the isosurface displays nodes on every +other C, similarly as in pentadienyl. Isovalues: ±0.03 au. +1 +2 +3 +4 +5 +(b) +N C C C C C C C N +N +C +C +C +C +C +C +C +N +(a) +N +N +C +C +C +C +C +C C C C C +N +N +FIG. 3. Partially screened Coulomb parameters Uij = (UA)ij +in the LO basis for the pentadienyl (a) and the benzyl (b) +radicals. +Figs. 3(a,b) for the pentadienyl and the benzyl radicals, +respectively. In both cases, the intra-orbital couplings Uii +are in the range of 4–5 eV and are slightly stronger for +the atoms farther away from the metallic Au electrons, +due to the weaker screening effects. Similar values of the +Coulomb repulsion are found for the anchoring groups. +However, as we shall see later, while the Cpz LOs are +close to half-filling the Npz LOs are almost full, resulting +in weak correlation effects. +VI. +ELECTRON TRANSPORT +We start our analysis by looking at the electron trans- +port properties of the pentadienyl and benzyl junctions. +In particular, we compare the predictions of DFT and +many-body simulations, where the Coulomb repulsion is +treated at different levels of approximation. + +7CH2 +CH2 +CH +H7CH2 +CH2 +CH +H7CH2 +CH2 +CH +H7CH2 +CH2 +CH +H7CH2 +CH2 +CH +H7 +A. +Pentadienyl +Within DFT, the transmission function displays a res- +onance close to the Fermi energy (denoted by EF ) corre- +sponding to ballistic transport through the SOMO. The +resonance is found at ϵSOMO = 70 meV and has a width +ΓSOMO ≈ 300 meV, reflecting a significant hybridization +of the SOMO with the states of the electrodes. +The +slight misalignment between the SOMO resonance and +EF , yield a conductance G = 5.7 × 10−1 G0 in each +spin channel, see Fig. 4(a), This scenario changes as the +SOMO resonance is split due to the Coulomb repulsion. +However, depending on the splitting mechanism, we ob- +serve fundamentally different transport properties. +Within spin-unrestricted R-DMFT calculations, the +spin rotational symmetry is broken. +The doublet de- +generacy is lifted as the SOMO is split into an occu- +pied state in the majority-spin channel (e.g., ↓-SOMO) +and an unoccupied state in the minority-spin channel (↑- +SUMO). This approximation yields a magnetic insulator +with a spin gap ∆s ≈ 1.3 eV and a magnetic moment +⟨Sz⟩ ≃ 1/2 due to the single unpaired electron. +The +spin-dependent splitting of a transmission feature, e.g., +a resonance [16, 17, 82] or an antiresonance [30, 31], has +been suggested as a suitable mechanism for the realiza- +tion of organic spin filters. For pentadienyl, the splitting +is approximately symmetric around the Fermi level, thus +yielding a similar conductance in the two spin channels +G↑ = 1.9 × 10−2 G0 and G↓ = 1.5 × 10−2 G0 and low +spin-filtering efficiency. The spin-unrestricted R-DMFT +transmission functions are shown in Fig. 4(a) . +Another possible mechanism to split the SOMO is ob- +tained without lifting the spin degeneracy (i.e., within +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +R-DMFT +R-DMFT +10-6 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +R-DMFT +ED +DFT +(a) +(b) +node +FIG. 4. Electron transmission function through the pentadi- +enyl radical junction. DFT predicts a SOMO resonance close +to EF . Taking into account the Coulomb repulsion beyond +restricted DFT yields: (a) a splitting of the resonance into +↓-SOMO and ↑-SUMO due to spin-symmetry breaking; (b) a +splitting of the resonance without symmetry breaking and a +transmission node due to many-body effects. +either R-DMFT or ED). In this case, we find that the +SOMO transmission resonance is split, revealing an un- +derlying transmission node, see Fig. 4(b). Hence, many- +body calculations predict a strong suppression of the con- +ductance, by several order of magnitude, in stark contrast +with the single-particle picture, in which electron trans- +port is dominated by a nearly-resonant ballistic channel. +Note that the splitting is substantially larger in ED than +in R-DMFT, and considering that the antiresonance is +not aligned with EF , it also results in a much stronger +suppression of the conductance G = 8.1 × 10−4 G0 (ED) +versus G = 4.9×10−1 G0 (R-DMFT). This suggests that +non-local effects play an important role, as it can be ex- +pected in low-dimensional systems [27, 32]. +Since a linear π-conjugated molecule does not display +any topological node, the pentadienyl node has been sug- +gested to arise from destructive interference between dif- +ferent charged states of the molecule [14]. In Sec. VII, we +discuss in detail the microscopic mechanism responsible +for the splitting of the SOMO and for the transmission +node, and show that they are intertwined. +B. +Benzyl +In the case of benzene single-molecule junctions, there +is more than one possible configuration for the ring to +bridge the electrodes, depending on the position of the +amino anchoring groups. We focus on the meta configu- +ration (i.e., amino groups substituted at the 1,3-positions +of the aromatic ring) which is particularly relevant in the +context of molecular electronics. +Within DFT, the transmission function displays two +striking features which can be readily identified in +Figs. 5(a,b): a narrow asymmetric Fano resonance at +ϵFano < 10 meV, close to EF , and a wide antiresonance +at ϵDQI ≈ −0.8 eV. Both features originate from quan- +tum interference (QI) effects. Clarifying the nature of the +resonances and highlighting their differences, will prove +helpful in understanding how electronic correlations af- +fect the transport properties and to shed light on the +underlying microscopic mechanism. +The Fano resonance has a characteristic asymmetric +line shape and arises from the QI between the SOMO, +which is mostly localized at the benzylic C atom, and +the delocalized MOs on the molecular backbone, which +have a strong overlap with the states of the metallic Au +electrodes [83–85]. The antiresonance is the hallmark of +destructive QI in the meta configuration and it is well- +established in the literature, from both the experimen- +tal [86–88] and theoretical [89–93] points of view. It arises +from the interference between the HOMO and LUMO of +the ring itself [93]. There is a subtle interplay between the +antiresonance and the functional groups (not necessarily +radical). It is well-established that substituents and ad- +sorbates affect the relative position of destructive inter- +ference features with respect to the Fermi energy. The +chemical control of the antiresonance can be exploited + +8 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +R-DMFT +ED +DFT +R-DMFT +R-DMFT +(a) +(b) +Fano +DQI +FIG. 5. Electron transmission function through the benzyl radical junction, displaying the Fano and antiresonance originating +by quantum interference effects. (a) Breaking the spin symmetry results in the spin-splitting of both the Fano and the DQI +features. (b) Including many-body effects beyond DFT, the Fano resonance is split (without symmetry-breaking) while the +DQI antiresonance is shifted to lower energies. +for a wide range of applications ranging from nanoelec- +tronics [94] to chemical sensing [95, 96] In principle, the +position of the antiresonance is also influenced by the +substitution position in the ring (see, e.g., [94] and refer- +ences therein), but this effect is of marginal relevance to +the scope of the present work. +The Fano resonance is indeed the transport signa- +ture of the SOMO. However, in contrast to pentedienyl, +where the SOMO is delocalized along the molecular back- +bone and dominates the electron transport, in benzyl, +the SOMO is mostly localized on the methyl functional +group. It is therefore interesting to investigate the effect +of the Coulomb repulsion and highlight the differences +between the two cases. Within restricted DFT simula- +tions, the narrow Fano resonance is partially concealed by +the wider QI antiresonance. Breaking the spin symmetry +within spin-unrestricted R-DMFT yields a pair of spin- +split Fano resonances, as shown in Fig. 5(a). In the ma- +jority spin channel, ϵ↑ +Fano < 0 falls within the transmis- +sion depletion caused by the antiresonance and the asym- +metric Fano profile is clearly observable. +Its counter- +part in the minority spin channel is found above EF , i.e., +ϵ↓ +Fano > 0, and is still mostly concealed by the background +transmission. Interestingly, the spin-symmetry breaking +also induces spin-resolved QI antiresonances [30, 31, 97] +but the splitting ϵ↓ +DQI − ϵ↑ +DQI is however weaker than in +the Fano case, since the spin imbalance yields ⟨Sz⟩ ≃ 1/2 +on the pz LO of the benzylic C, and a weaker magneti- +zation in the rest of the molecule. +Not allowing breaking the spin symmetry in the many- +body simulations reveal another scenario, as shown in +Fig. 5(b). The difference is twofold. We observe a split- +ting of the Fano resonance in both R-DMFT and ED +(with the ED splitting being significantly larger) but no +splitting is detected for the QI antiresonance, which is +rather shifted further away from EF . This suggests that +the microscopic mechanism behind the splitting with and +without spin-symmetry breaking are fundamentally dif- +ferent, as it distinguishes between the two QI features. +Moreover, in contrast to the case of pentadienyl, the split- +ting of the SOMO in benzyl does not result in a strong +suppression of the transmission within the SOMO-SUMO +gap. The two observations above are deeply connected, +and eventually, they can both be rationalized in terms of +the spatial distribution of the SOMO. +VII. +MICROSCOPIC MECHANISM +A. +Splitting of the SOMO +So far, we have seen that the Coulomb repulsion in- +duces a splitting of the SOMO of the organic radicals. +In order to gain a deeper understanding of the electronic +mechanism behind the splitting, and how it affects the +transport properties of the junction, it is useful to look +at the retarded self-energy in the LO basis Σij = (ΣA)ij, +corresponding to ΣED +A +and Σσ,R−DMFT +A +in Eqs. (13, 20), +respectively. The many-body effects encoded in the self- +energy can be rationalized by interpreting the real part +as an energy-dependent level shift, and the imaginary +part as an effective electron-electron scattering rate. We +argue that the mechanism discussed in the following is a +common feature of organic radicals. Therefore, we dis- +cuss the pentadienyl and benzyl radicals in parallel and +highlight the differences whenever necessary. +In order to compare the different approximations, it +is convenient to look at the trace of the self-energy ma- +trix. Within spin-unrestricted R-DMFT, which is shown +in Figs. 6(a,d), the real part of the self-energy is weakly +energy-dependent around EF , and determines a shift of +the SOMO resonance in opposite directions for the two +spin polarizations. The imaginary part is negligible (not +shown) resulting in highly coherent SOMO and SUMO +electronic excitations below and above EF . +Note that +the ground state of spin-unrestricted R-DMFT is two- +fold degenerate, and it is invariant under a flip of all +spins: {σi} → {¯σi}. This picture is qualitatively anal- +ogous to what one can expect also at the single-particle +level, i.e., within DFT+U. Many-body effects are weak, +and the dominant effect arises from the spin-symmetry +breaking, as both radicals are magnetic insulators with a + +9 +-6 +-4 +-2 +0 +2 +-60 +-40 +-20 +0 +20 +-4 +-2 +0 +2 +R-DMFT +ED +R-DMFT +R-DMFT +-0.5 +0 +0.5 +1 +-30 +-20 +-10 +0 +10 +-80 +-60 +-40 +-20 +0 +20 +40 +-1 +-0.5 +0 +0.5 +-12 +-10 +-8 +-6 +R-DMFT +ED +pentadienyl +benzyl +(a) +(d) +(b) +(e) +(c) +(f) +R-DMFT +R-DMFT +FIG. 6. Trace of the retarded self-energy Tr[Σ(E)] in the LO +basis for the pentadienyl (a,b,c) and benzyl (d,e,f) radicals +(the real and imaginary parts are denoted by solid and dashed +lines, respectively). Within spin-unrestricted R-DMFT (a,d) +the self-energy displays a weakly energy-dependent real part, +which is different in each spin sector, while the imaginary part +is negligible (not shown). Within both R-DMFT (b,e) and +ED (c,f) the self-energy is dominated by a single resonance at +energy ϵr (denoted by a solid grey line). +spin SOMO-SUMO gap. +The scenario is completely different within restricted +R-DMFT and ED, as shown in Figs. 6(b,c,e,f). There, +the self-energy is dominated by a single resonance and its +energy dependence can be well described within a one- +pole approximation (OPA) +ΣOPA(E) = +a +E − EF − ϵr + ıγ . +(28) +The OPA self-energy has a Lorentzian shape, where ϵr +and γ denote the resonant energy and the width of +the resonance, whereas a controls the amplitude of the +curve. The imaginary part of the self-energy plays the +role of a giant electron-electron scattering rate and sup- +presses electronic excitations around ϵr ≃ ϵSOMO, while +the real part redistributes the spectral weight towards +higher energies. This many-body mechanism, akin to the +Mott metal-to-insulator transition as described within +DMFT [42], is at the origin of the splitting of the SOMO +resonance. +In organic radicals, the following hierarchy of emergent +energy scales is realized: ΓSOMO ≪ ∆ <∼ Uscreened, where +the typical energy scale associated with the screened +Coulomb repulsion Uscreened significantly exceeds the nar- +row width of the SOMO resonance (∼ 10–100 meV), +and the HOMO-LUMO single-particle gap ∆ controlled +by the C-C π-bonds (∼ eV). This sets the electrons in +the SOMO deep within the strongly correlated regime. +Such a general condition suggests this mechanism to be +common to organic radicals with a single unpaired elec- +tron. +Multi-radical molecules [98] and networks [99], +may display different electronic and transport properties +due to effective interactions between the unpaired elec- +trons [7, 18–20]. +B. +Spatial structure of the electronic correlations +While R-DMFT and ED seem to qualitatively describe +the same many-body mechanism for the splitting of the +SOMO, it is also interesting to look at the whole self- +energy matrix. +As discussed in Sec. III C, within ED +all elements Σij ̸= 0, whereas within R-DMFT Σij ∝ δij. +Remarkably, all elements of the self-energy (irrespectively +of the approximation) are well described by the OPA with +the same resonant energy ϵr, as shown in Figs. 7(a,e). +The off-diagonal elements (when non-zero) can have ei- +ther sign since it is not determined by causality. It is then +easy to have a comprehensive look at the self-energy by +plotting the matrix Σij(ϵr), as shown in Figs. 7(c,d,g,h). +Indeed, looking at the ED self-energy matrix, clear pat- +terns emerge. Along the diagonal, some elements Σii are +significantly larger than the others (note the logarithmic +scale), and this asymmetry is mirrored by the off-diagonal +elements. Upon close inspection, we can associate them +with the pz LOs with the largest SOMO projection, thus +confirming that the strongest many-body effects corre- +late with the spatial distribution of the SOMO. Within +R-DMFT, we find an analogous pattern along the diag- +onal, as indicated in the insets. +Despite its approximations (local Coulomb interaction, +local correlations), it seems that R-DMFT tells qualita- +tively the same story as the full ED simulations. This +advocates for a substantially local character of the mi- +croscopic mechanism, that can describe both the splitting +of the SOMO and its consequences on electron transport, +whereas non-local effects renormalize the splitting. +C. +Implications for electron transport +The many-body mechanism behind the splitting of the +SOMO is common to both the pentadienyl and benzyl +radicals. However, its consequences on electron transport +are dramatically different. In order to understand why, +it is necessary to combine the insights from DFT with +the knowledge about the spatial and energy structure of +the self-energy. +In pentadienyl, the SOMO is delocalized throughout +the molecular backbone, and its large projection on the + +10 +0 +1 +2 +3 +4 +5 +6 +1 +2 +3 +4 +5 +0 +6 +-20 +-10 +0 +10 +20 +0 +1 +-10 +-5 +0 +5 +10 +0 +1 +(g) +(h) +(c) +(d) +N C C C C C C C N +N +C +C +C +C +C +C +C +N +N C C C C C C C N +N +C +C +C +C +C +C +C +N +N C C C C C N +ED +N C C C C C N +R-DMFT +N +C +C +C +C +C +N +C +C +C +C +C +N +N +ED +R-DMFT +0 +10-1 +101 +-10-1 +-101 +0 +10-1 +101 +-10-1 +-101 +-30 +-20 +-10 +0 +10 +20 +30 +0 +1 +-60 +-40 +-20 +0 +20 +40 +60 +0 +1 +(a) +(b) +(e) +(f) +ED +ED +ED +ED +0 +1 +2 +3 +4 +5 +6 +1 +2 +3 +4 +5 +0 +6 +0 +1 +2 +3 +4 +5 +6 +7 +8 +0 +1 +2 +3 +4 +5 +6 +7 +8 +0 +1 +2 +3 +4 +5 +6 +7 +8 +0 +1 +2 +3 +4 +5 +6 +7 +8 +FIG. 7. Component of the ED self-energy Σij(E) and its matrix representation at the resonant energy Im Σij(ϵr) in the LO +basis for the pentadienyl (a,b,c,d) and benzyl (e,f,g,h) radicals. Each component of the self-energy (grey lines) is dominated by +a single pole (a,b,e,f) at a resonant energy ϵr. Selected components (i, j) are highlighted (color lines) and are labeled according +to their index in the matrix. The matrix structure of the self-energy reflects the spatial distribution of the SOMO, i.e., the +largest local (Σii) and non-local (Σij̸=i) self-energy contributions are found for the LOs with the largest projections to the +SOMO (denoted by arrows, see also Fig. 2). Within R-DMFT (d,h) the self-energy is diagonal in the LO indices Σij ∝ δij and +displays the same pattern. +pz LOs of the anchoring groups (see Fig.2(a)) ensures a +substantial overlap with the states in the metallic elec- +trodes. Hence, there is a transmission channel across the +junction through the SOMO. The pole of the self-energy +results in a zero of the corresponding Green’s function. +The suppression of the Green’s function hinders electron +transport at that energy and is at the origin of the trans- +mission node [30, 31]. In contrast, in the benzyl radical, +the SOMO has negligible projection on the amino groups +(see Fig.2(d)) and transport is dominated by transmis- +sion channels involving the frontier MOs. Therefore, the +splitting of the Fano resonance weakly affects those chan- +nels, and does not prevent the off-resonance transmission +of electrons across the junction. +The above picture can be essentially reproduced within +the following tight-binding (TB) three-orbital model, +which is schematically represented in Fig. 8(a). Let us +consider three orbitals (ℓ, c, r) that can be interpreted as +the amino groups, left (ℓ) and right (r), and the central +molecule (c). The Hamiltonian in such a basis reads +H = +� +� +ϵℓ +t +t′ +t +ϵc +t +t′ +t +ϵr +� +� . +(29) +The hybridization to the electrodes is mediated by the +external (ℓ, r) orbitals and, for the sake of this discussion, +it is assumed to be energy-independent: +ΓL = +� +� +Γ 0 0 +0 0 0 +0 0 0 +� +� , ΓR = +� +� +0 0 0 +0 0 0 +0 0 Γ +� +� . +(30) +The Hamiltonian of the isolated system can be diagonal- +ized to obtain the eigenvalues ϵHOMO, ϵSOMO, and ϵLUMO. +In light of the results shown in Fig. 7, the Green’s func- +tion of the device +GD(z) = +� +z − H + ıΓL/2 + ıΓR/2 − ΣD(z) +�−1 +(31) +is dressed with an OPA self-energy +ΣD(z) = +� +� +0 +0 +0 +0 ΣOPA(z) 0 +0 +0 +0 +� +� +(32) +which acts on the central part (see Fig. 7(a,e) for a con- +nection with the ab-initio simulations) and has a pole at +ϵSOMO. Within such a three-orbital model, the Landauer +transmission in Eq. (26) simplifies to +T(E) = Γ2|Gℓr(E)|2, +(33) +where Gℓr = (GD)ℓr is the upper-right element of the +Green’s function, linking the orbitals connected to the + +11 +(c) +10-8 +10-6 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +10-8 +10-6 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +-1 +0 +-2 +-1.5 +-1 +0 +1 +-0.5 +0 +0.5 +1 +-4 +0 +4 +-2 +-1.5 +-0.4 +0 +0.4 +-0.5 +0 +0.5 +1 +Fano +splitting +splitting +node +zero +1 +(g) +(d) +(h) +(e) +(i) +TB +OPA +TB +OPA +1 +(a) +(b) +(f) +FIG. 8. Schematic representation of the three-orbital TB model with its parameter, and form of the OPA self-energy (a). +Weight distribution and eigenvalues of the TB MOs for scenarios representative of the pentadienyl (b) and benzyl (f) radicals. +The transmission function (c,g) obtained without (grey lines) and with (blue lines) the OPA self-energy captures all relevant +features of the DFT and many-body simulations. The Green’s function Gℓr is shown for specific energy ranges, which are +relevant to explaining the spectral features associated with the HOMOs (d,h) and the SOMOs (e,i), as discussed in the text. +Model parameters [eV]: ϵ = 0.5, ϵc = 0.25, a = 0.25, Γ = 0.05, γ = 0.003, common to both scenarios, t = 0.5, t′ = 0 (b,c,d) and +t = 0.1, t′ = 0.5 (e,f,g). +electrodes, and describes the only transmission channel +across the junction. +For the sake of simplicity, one can take −ϵℓ = ϵr = ϵ, +and ϵc ≪ ϵ, which together with a, Γ, and η are kept +fixed, whereas we choose the parameters t and t′ to de- +scribe two scenarios, which are representative of the pen- +tadienyl and benzyl radicals. The results are shown in +Fig. 8 and described in the following. +The physics of the pentadienyl radical can be repro- +duced by choosing t <∼ ϵ and t′ = 0. The correspond- +ing TB MOs are fairly delocalized throughout the sys- +tem, as shown in Fig. 8(b). Hence, electron transport +happens through sequential hopping processes through +the c orbital. The transmission function, Fig. 8(c), dis- +plays a SOMO resonance which is split by including the +OPA self-energy, revealing a transmission node within +the SOMO-SUMO gap. The origin of the transmission +node is ascribed to a zero of the Green’s function at the +SOMO energy Gℓr(E ≃ ϵSOMO) [30, 31] as demonstrated +in Fig. 8(e). +Instead, with the choice of parameters t ≪ t′ <∼ ϵ, one +can describe the physics of the benzyl radical, charac- +terized by an orbital c, which is weakly coupled to the +ℓ − r molecular backbone. The corresponding SOMO is +fairly localized on the central orbital, see Fig. 8(f). The +transmission function displays a Fano resonance which is +split by the OPA self-energy see Fig. 8(g). In contrast to +the previous case, Gℓr does not have a zero, and trans- +port is dominated by a transmission channel that bridges +the electrodes through the direct ℓ-r hopping t′. Finally, +note that in both scenarios above, many-body effects are +negligible for the HOMO and LUMO resonances (corre- +sponding to states which are completely filled and empty, +respectively) even when the “correlated” c orbital has a +sizable hybridization with ℓ and r, cfr. Figs. 8(c,d,g,h). +Hence, the three-orbital model can reproduce all fun- +damental features of the radical junctions discussed in +this work, and at the same time, provides a simple inter- +pretation of the numerical simulations. +D. +Non-perturbative nature of the splitting +Within ED and R-DMFT, the solution of the many- +body problem (i.e., on the lattice or the auxiliary AIM) +is numerically exact. +This means that the Coulomb +repulsion is taken into account in a non-perturbative +way. +It is interesting to compare these results to a +perturbative approach, e.g., within the GW approxima- +tion [100, 101], which has been extensively and success- +fully applied to molecules [102–107]. However, the ques- +tion arises to which extent many-body perturbation the- +ory approaches are able to describe the physics of open- +shell systems [108]. Within GW, the self-energy is com- +puted to the lowest order in perturbation theory, as a +convolution of the Green’s function and the screened in- + +12 +10-4 +10-2 +1 +-2 +-1 +0 +1 +2 +G0W0 +GW +(a) +FIG. 9. Electron transmission function through the pentadi- +enyl radical junction. Both the G0W0 and the self-consistent +GW approximations fail to predict the splitting of the SOMO, +as described within ED and R-DMFT, cfr. Fig 4. +teraction. +We compute the GW self-energy correction +projected onto the A region +Σ(z) = GA(z)WA, +(34) +as described in [68], and we consider the case of the pen- +tadienyl radical without loss of generality. +In Fig. 9 we see that neither G0W0 nor the fully self- +consistent GW approximation is able to induce a split- +ting of the SOMO resonance, and the numerical simu- +lations rather result in a shift of the corresponding res- +onance above the Fermi energy. Hence, the many-body +techniques we propose to investigate open-shell molecules +are not only sufficient but also necessary for our goal, +whereas less sophisticated approaches fall short in de- +scribing the electronic and transport properties arising +from the strong electronic correlations within the SOMO. +VIII. +CONCLUSIONS +In this work, we have proposed a numerical method +that that combines ab-initio with state-of-the-art many- +body techniques and is able to address the complexity +of a realistic chemical environment as well as electronic +correlation effects beyond the single-particle picture. +The deliverable of this project served to shed light on +the mechanism governing the electronic and transport +properties of quantum junctions with organic molecules +in an open-shell configuration. By considering a linear +and a cyclic radical molecule, we derive a general under- +standing of the role of many-body effects in molecular +radicals with a single unpaired electron, and we show +that they have dramatic consequences on electron +transport. +We establish the microscopic mechanism +behind the splitting of the SOMO resonance and unravel +a clear link between the space-time structure of electron- +electron correlations and the spatial distribution of the +SOMO. We demonstrate this by proposing a minimal +model, which is capable of grasping the microscopic +mechanism and thus reproducing all relevant features of +the transmission properties. Our work will pave the path +toward a deeper and more comprehensive understanding +of strongly correlated electron physics at the nanoscale. +ACKNOWLEDGEMENTS +We thank J. M. 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S´anchez- +Portal, New Journal of Physics 23, 093027 (2021), URL +https://doi.org/10.1088/1367-2630/ac1bf3. + diff --git a/5NAyT4oBgHgl3EQfcfcz/content/tmp_files/load_file.txt b/5NAyT4oBgHgl3EQfcfcz/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..de45d7cf1ea38e18318a75ee794f0658ddd1bc38 --- /dev/null +++ b/5NAyT4oBgHgl3EQfcfcz/content/tmp_files/load_file.txt @@ -0,0 +1,1654 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf,len=1653 +page_content='Strongly correlated physics in organic open-shell quantum systems G.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Gandus,1, ∗ D.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Passerone,2 R.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Stadler,3 M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Luisier,1 and A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Valli3, 4, † 1Integrated Systems Laboratory, ETH Z¨urich, Gloriastrasse 35, 8092 Z¨urich, Switzerland 2Empa, Swiss Federal Laboratories for Materials Science and Technology, ¨Uberlandstrasse 129, CH-8600, D¨ubendorf, Switzerland 3Institute for Theoretical Physics, Vienna University of Technology, Wiedner Hauptstrasse 8-10, A-1040 Vienna, Austria 4Department of Theoretical Physics, Institute of Physics, Budapest University of Technology and Economics, M¨uegyetem rkp.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', H-1111 Budapest, Hungary Strongly correlated physics arises due to electron-electron scattering within partially-filled or- bitals, and in this perspective, organic molecules in open-shell configuration are good candidates to exhibit many-body effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' With a focus on neutral organic radicals with a molecular orbital host- ing a single unpaired electron (SOMO) we investigate many-body effects on electron transport in a single-molecule junction setup.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within a combination of density functional theory and many-body techniques, we perform numerical simulations for an effective model for which all the parameters, including the Coulomb tensor, are derived ab-initio.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We demonstrate that the SOMO resonance is prone towards splitting, and identify a giant electronic scattering rate as the driving many-body mechanism, akin to a Mott metal-to-insulator transition.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The nature of the splitting, and thus of the resulting gap, as well as the spatial distribution of the SOMO and its coupling to the electrodes, have dramatic effects on the transport properties of the junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We argue that the phenomenon and the underlying microscopic mechanism are general, and apply to a wide family of open-shell molecular systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' I.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' INTRODUCTION Strongly correlated electronic physics arises in par- tially occupied orbitals in the presence of competing en- ergy scales.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Due to the Coulomb repulsion, electrons display a collective behavior, leading to the breakdown of the single-particle picture and the emergence of com- plex quantum phenomena.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Electronic correlations are also enhanced due to spatial confinement effects in low- dimensional and nanoscopic systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' While in solid-state physics the concept of a “strongly-correlated metal” is well-established, its analog for molecules is not obvious.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In chemistry, the majority of stable organic molecules have closed-shell electronic configurations, and electrons are paired in delocalized molecular orbitals (MOs) that are either completely filled or empty.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The energy differ- ence between the frontier MOs, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', the highest occupied (HOMO) and the lowest unoccupied (LUMO) orbitals defines the spectral gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In particular, π-conjugated sys- tems display a wide HOMO-LUMO gap (∆ ∼ eV) which is controlled by the overlap of neighboring pz orbitals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' A molecular system in an open-shell configuration (radical) is characterized by unpaired valence electrons residing in non-bonding singly-occupied MOs (SOMOs) found at intermediate energies between HOMO and LUMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Rad- icals can form by breaking bonds or by adding/removing electrons (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', in photoinduced processes) and are inter- mediate products of chemical reactions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' While open-shell configurations are typically associ- ated with high chemical reactivity, there exist also species ∗ gandusgui@gmail.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='com † valli.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='angelo@ttk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='bme.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='hu of relatively stable radicals, which possess interesting electronic, magnetic, and optical functionalities that are relevant to technological applications ranging from next- generation spintronics to quantum information [1–3].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Tremendous advances in the synthesis and character- ization of organic radicals triggered recent experimen- tal studies with organic species that are stable enough to be trapped in break-junctions [4, 5] or investigated with scanning tunneling spectroscopy [6–9], which fu- eled a revival of interest in the molecular Kondo ef- fect [4, 6–12].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' There is a growing experimental and theoretical effort to unravel how many-body effects can dramatically influence electronic and transport proper- ties in light of technological applications.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In the con- text of molecular electronics, noteworthy organic radicals include triphenylmethyl [4, 5, 12], Blatter radical [13], polyacetylene [14, 15], benzyl [16, 17], together with the whole family of polycyclic hydrocarbons with non-Kekul`e structure [7, 18–20].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Molecular organic frameworks with transition-metal centers (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', iron-porphyrin) are also typically open-shell, and have been recently suggested as molecular transistors [21, 22].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' From the theoretical point of view, in wide-gap semi- conductors, the electron-electron scattering rate is low due to the lack of electronic states at the Fermi energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The accuracy of ab-inito prediction of the gap is a long- standing issue [23], and numerical simulations for insula- tors [24, 25] and molecules [25–32] predict a many-body renormalization of the spectral gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, these ef- fects do not change qualitatively the transport proper- ties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In open-shell configurations instead, it can be ex- pected that electron-electron scattering within the par- tially filled SOMO and many-body effects have a promi- nent role.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='00282v1 [cond-mat.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='str-el] 31 Dec 2022 2 In computational quantum chemistry, it is well- established that open-shell molecular configurations re- quire careful treatment (see, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', [33] for an overview) but the accuracy of quantum chemical methods comes at a high numerical cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, we recently witnessed significant advances in developing alternative simulation schemes, that are suitable to describe complex devices relevant to molecular electronics [11, 34, 35].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In the en- deavor to achieve predictive power and allow for a quan- titative comparison with experiments, a suitable method should be high-throughput — i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', scalable and automa- tized as much as possible, and able to describe a real- istic chemical environment and many-body correlations within an ab-initio framework.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This would allow a coop- erative effort between theory and experiments, and pave the path to future breakthroughs for next-generation quantum technologies.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' II.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' SCOPE OF THIS WORK The scope of this work is to investigate the emergence of strongly correlated electron physics in the electronic and transport properties of single-molecule junctions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' To this end, we have developed a comprehensive nu- merical workflow that combines density functional theory (DFT) with quantum field theoretical methods, and it is able to address the complexity of a realistic chemical en- vironment as well as electronic correlation effects beyond the single-particle picture within an ab-initio framework.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' With both aspects taken into account, we are able to un- ravel the origin of many-body transport effects in single- molecule junctions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The art of combining ab-initio and many-body com- putational schemes lies in a transformation from non- orthogonal atomic orbitals (AOs) to recently introduced local orbitals (LOs) [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The LOs are by construction orthogonal within the same atom and localized in space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' They take over the symmetries of the original AOs, while inheriting the information of the environment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This al- lows to represent the electronic wavefunction in a region of the spectrum close to the Fermi energy with a mini- mal set of orbitals, making them an ideal basis for many- body calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' So far, LOs have been employed in the context of DFT [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In what follows, we also evaluate the Coulomb integrals that describe the electron-electron repulsion in the LO basis, and thus map to the origi- nal Hamiltonian onto an effective many-body problem, which we can feasibly solve with appropriate numerical methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This recipe is particularly suitable to address strong correlation effects in the transport properties of molecular junctions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In terms of applications, we focus on molecular break- junctions in which the central molecule bridging the elec- trodes is in an open-shell configuration, which are strong candidates to manifest many-body effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Specifically, we select a linear and a cyclic molecular bridge, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', a polyene radical, and a benzene molecule substituted with a methylene (CH2) radical group.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' While both molecules are π-radicals with one electron in the SOMO, we show that many-body effects bring out profound differences.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We identify the fingerprint of strong electronic correla- tions in the splitting of the SOMO resonance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The details of the splitting and the spatial distribution of the SOMO on the molecular backbone have dramatic consequences on the transport properties of the junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Finally, we demonstrate that such a splitting cannot be obtained with less sophisticated techniques, such as many-body perturbation theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We argue that this phe- nomenon and the underlying microscopic mechanism are general, and apply to a wide family of open-shell molec- ular systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' III.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' METHODS A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Local orbitals and low-energy models The LOs method [36] is a transformation-based ap- proach that aims at retrieving hydrogen-like orbitals for atoms in molecules and solids.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' By construction, LOs are locally orthogonal on each atom.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The starting point is a DFT calculation in an AOs basis set.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Hilbert space H is then spanned by a finite set of non-orthogonal or- bitals {|i⟩}, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', with a overlap matrix ⟨i|j⟩ = (S)ij ̸= δij for |i⟩ , |j⟩ ∈ H.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' A set of LOs {|m⟩} ∈ M ⊆ H can be obtained for any atom α in subspace M by a subdiago- nalization of the corresponding Hamiltonian sub-block Hα |m⟩ = ϵmSα |m⟩ (1) The LOs are then linear combinations of AOs and are by definition orthogonal on each atom.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This allows for a more natural physical interpretation of the LOs as atomic orbitals [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In order to obtain an ab-initio effective model, we formally separate the Hilbert space into an ac- tive space (A) and an environment (E).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The active space consists of a subset of LOs {|a⟩} = A ⊆ M which are ex- pected to describe the relevant physics close to the Fermi energy, and at the same time can be efficiently treated within quantum many-body techniques.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Insytead, the environment consists of all the remaining LOs and AOs, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', {|e⟩} ∈ E ≡ H \\A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Embedding the active space into the environment ensures that the effective model pre- serves all information of the original single-particle DFT Hamiltonian [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Finally, it is convenient to perform a L¨owdin orthogonalization [37] of the LO {|a⟩} states and redefine the A subspace in terms of this new orthonormal basis set with elements ��a⊥� = � a (S−1/2)aa⊥ |a⟩ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (2) Since the overlap between LOs on different atoms is typi- cally low, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', (S)ij ≪ 1, the L¨owdin orthonormalization of the active space results only in a weak deformation of the original LOs, which preserves their atomic-like sym- metry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 3 In practice, the LO low-energy model is constructed embedding the active subspace into the environment through a downfolding procedure [38, 39].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Taking into account the non-orthogonality between the A and E sub- spaces [34], we write the Green’s function projected onto the A subspace as GA(z) = S−1 A SAHGH(z)SHAS−1 A , (3) where z = E + iη is a complex energy with an infinites- imal shift η → 0+.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' GH denotes the Green’s function of the full Hilbert space, and SAH the overlap matrix be- tween orbitals ��a⊥� ∈ A and orbitals |i⟩ ∈ H, while the overlap SA between the ��a⊥� states is, by construction, the identity matrix and will be omitted in what follows for notational simplicity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The effect of the environment on the A subspace is described by the hybridization func- tion ∆A(z) = g−1 A (z) − GA(z)−1, (4) where gA = � z − HA �−1 (5) is Green’s function of the isolated A subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Rewriting GA in terms of ∆A and using the definition of gA yields GA(z) = � z − HA − ∆A(z) �−1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (6) Then, GA can be seen as the resolvent of an effective A subspace renormalized by the environment through a dynamical hybridization.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Green’s function describes the physics of the whole system, projected onto a sub- space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For a single-particle Hamiltonian, the partition above is arbitrary, and the procedure remains valid indepen- dently of the subset of LOs included in the active space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In the context of π-conjugated organic molecules, the projection onto a single pz LO per C atom (and pos- sibly other species such as N or S) is usually sufficient to achieve a faithful representation of the frontier MOs, and hence suitable to describe the physics close to the Fermi energy [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The possibility of considering a re- stricted subset of LOs in the effective model is of pivotal importance in view of performing computationally-heavy many-body simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' cRPA and ab-initio Coulomb parameters In order to derive the electronic interaction parameters in the A subspace beyond the semi-local density approx- imations, we employ the constrained Random Phase Ap- proximation (cRPA) [34, 40, 41].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within the cRPA, we select a region R ⊃ A where the formation of electron- hole pairs is expected to screen the Coulomb interaction between the A electrons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Because of the strong local na- ture of the LOs, it is sufficient that R comprises the A subspace and few atoms nearby.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Defining GR to be the Green’s function projected onto the R subspace in anal- ogy with Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (3), the screened Coulomb interaction at the RPA level is given by WR = � I − VRPR �−1VR, (7) where VR is the bare Coulomb interaction (VR)ij,kl = � dr � dr′ψi (r)ψ∗ j (r) e2 |r − r′|ψ∗ k(r′)ψl (r′), (8) being ψi(r) the orbitals in the R region, and PR is the static component of the polarizability (PR)ij,kl = −2i � dz′ 2π Gik(−z′)Glj(z′).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (9) The projection of WR onto the A subspace then yields the static screened interaction WA.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Since we aim at per- forming many-body simulations of the effective model, we need to partially unscreen the Coulomb parameters, eliminating from WA the screening channels arising from A-A transitions included in PR, which will be treated at a more sophisticated level of theory.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This can be done according to the following prescription UA = WA � I + PAWA �−1, (10) using the polarization PA of the A electrons obtained from GA similarly to Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (9).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The matrix elements in UA can therefore be regarded as the effective (partially screened) Coulomb parameters.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Solutions of the low-energy models The Green’s function of Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (6), together with the in- teractions parameters of Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (10), define a low-energy model which can be solved with many-body techniques.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Here, we propose two somewhat complementary strate- gies, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', exact diagonalization (ED) and the dynamical mean-field theory (DMFT) [42] as implemented within its real-space generalization (R-DMFT) for inhomogeneous systems [43–47].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Exact diagonalization The ED technique requires a Hamiltonian formulation of the effective model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' If the states of the active and embedding subspaces are energetically well-separated, it is possible to neglect the dynamical character of the hy- bridization function and construct an effective Hamilto- nian as Heff A = HA + ∆A(z = 0).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (11) 4 Including the screened Coulomb interaction, the model Hamiltonian then reads H = � ij,σ � Heff A − Hdc A � ijc† iσcjσ + 1 2 � ijkl,σσ′ � UA � ij,klc† jσc† kσ′clσ′ciσ, (12) where c(†) iσ denote the annihilation (creation) operator of an electron at LO i with spin σ, and the double-counting correction Hdc A accounts for the interaction already in- cluded at the mean-field level by DFT (see Sec.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' III D).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The diagonalization of this Hamiltonian yields the many- body spectrum (eigenstates and eigenvalues) which can be used to construct the Green’s function GED A through its Lehmann representation [48].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The many-body self- energy is obtained from the Dyson equation ΣED A (z) = z − Heff A − � GED A (z) �−1, (13) and it describes both local Σii and non-local Σi̸=j elec- tronic correlations in the LO basis.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' An obvious advan- tage of ED over, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', quantum Monte Carlo [49], is that it provides direct access to retarded self-energy and Green’s function, and hence the electron transmission function, without the need to perform an analytic continuation numerically, which is an intrinsically ill-defined prob- lem [50].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Note that within ED, we obtain a many-body self-energy which is, by construction, spin-independent, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', Σσ ij = Σ¯σ ij since Heff A follows from a restricted DFT calculation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Real-space DMFT The idea behind R-DMFT consists of mapping a many- body problem onto a set of auxiliary Anderson impurity models (AIMs) —one for each atom α— described by the projected Green’s function [44–46] gσ α(z) = (Gσ A(z))α .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (14) The solution of AIM α (see details below) yields a local many-body self-energy Σσ α(z), so that the self-energy of the A subspace is block diagonal in the atomic subspaces Σσ A(z) = diag( � Σσ α(z) | α ∈ A � ).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (15) The set of auxiliary AIMs are coupled by the Dyson equa- tion Gσ A(z) = � z+µ−(HA−Hdc A )−∆A(z)−Σσ A(z) �−1, (16) where the Green’s function Gσ A includes the many-body self-energy and the double-counting correction, and the chemical potential µ is determined to preserve the DFT occupation of the A subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Finally, Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (14-16) are iterated self-consistently starting with an initial guess (typically Σσ A = 0) until convergence.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' More in detail, in AIM α the impurity electrons inter- act through a screened local Coulomb repulsion projected onto atom α, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', Uα = (UA)ij,kl | i, j, k, l ∈ α [51].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Moreover, the impurity is embedded in a self-consistent bath of non-interacting electrons, which describes the rest of the electronic system, encoded in the hybridization function ∆σ α(z) = z +µ−(Hα −Hdc α )− � gσ α(z) �−1 −Σσ α(z).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (17) Also within R-DMFT, it is convenient to use ED to solve the AIMs to have direct access to retarded func- tions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This requires to discretize the hybridization func- tion with a finite number of bath orbitals, described by orbital energies ϵσ m and hopping parameters to the impu- rity tσ mi.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The hybridization parameters together with the local Coulomb blocks Uα, define the AIM Hamiltonian HAIM = � ij,σ � Hα − Hdc α � ijc† iσcjσ − µ � iσ c† iσciσ + � m,σ ϵσ ma† mσamσ + � mi,σ tσ mi(a† mσciσ + c† iσamσ) + 1 2 � ijkl,σσ′ � Uα � ij,klc† jσc† kσ′clσ′ciσ, (18) where c(†) iσ and a(†) mσ denote the annihilation (creation) operator of an electron at LO i with spin σ, or at bath orbital m with spin σ, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Once the many-body spectrum of the AIM is known, the local self-energy is evaluated in terms of the local Green’s function Gσ α as Σσ α(z) = � gσ α(z) �−1 − � Gσ α(z) �−1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (19) At convergence, we define the R-DMFT self-energy as Σσ,R−DMFT A (z) = Σσ A(z) − Hdc A − µ, (20) so that it contains all shifts related to the density matrix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In terms of approximations, R-DMFT takes into ac- count local electronic correlations (Σii), neglecting non- local correlations (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', Σij = 0), but some degree of non-locality is retained as Σii ̸= Σjj, and the AIMs are coupled through the self-consistent Dyson equation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Therefore, R-DMFT is suitable to treat intrinsically in- homogeneous systems [26, 46, 47, 52–54].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Moreover, R-DMFT is considerably lighter in terms of computa- tional complexity with respect to the direct ED of the original many-body problem and can treat systems with hundreds of atoms in the active space, inaccessible to ED [26, 44, 46].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Finally, besides the restricted solution Σσ A = Σ¯σ A, within R-DMFT we also have the freedom of breaking the spin degeneracy, and describe magnetic solutions [28, 30, 31, 44, 55].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' D.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Double-counting correction The double-counting (DC) correction Hdc A aims at eliminating the correlations in the A subspace included 5 at a mean-field level by DFT, which are instead to be included in a more sophisticated level of theory within the many-body simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Unfortunately, an analyt- ical expression of the correlation effects accounted for within DFT is unknown, and therefore several approxi- mations [47, 56–58] have been developed in the context of DFT+DMFT [59, 60] or DFT+U [61, 62].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For a single- orbital AIM (as in the case of the simulations in this work) the DC correction can be reasonably approximated within the fully localized limit (FFL) [57, 63–65] � Hdc A � ii = (UA)ii,ii � nDFT i − 1 2 � , (21) where nDFT i is the DFT occupation of orbital i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, we use this form of DC for the R-DMFT calculations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, there’s no established method for the general case of multi-site and multi-orbital Coulomb interaction as is the case for ED.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Here, we propose a self-consistent procedure in which a set of local parameters is optimized to fulfill the condition (ΣA)ii(|z| → ∞) = 0, (22) This approach ensures that the electronic properties at high-energies, which are well described by a one-particle approach, are restored to the DFT level.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' E.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Correlated quantum transport To describe the electronic transport properties, we use the non-equilibrium Green’s function (NEGF) approach [66, 67].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In NEGF, we identify a device region sur- rounding the nanojunction’s constriction and downfold the leads’ electrons by virtue of an efficient recursive al- gorithm [68].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The corresponding Green’s function reads GD(z) = � zSD−HD−ΣL(z)−ΣR(z)−ΣD(z) �−1, (23) where ΣL(R) is the self-energy describing the electrons in the left (right) electrodes, and ΣD(z) = SDAS−1 A ΣA(z)S−1 A SAD (24) projects the many-body self-energy of the active space ΣA (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', obtained within either ED or R-DMFT) onto the device region.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Following the generalization of the Landauer formula proposed by Meir and Wingreen [69], the conductance is given by G = G0T(EF ), (25) where G0 = e2/h is the conductance quantum, and the transmission function is computed as T(E) = Tr[GD(z)ΓL(z)G† D(z)ΓR(z)], (26) with ΓL(R) the anti-hermitian part of ΣL(R) ΓL(R) = i � ΣL(R) − Σ† L(R) � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (27) While Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (25)−(27) neglect the incoherent contribu- tions (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', due to inelastic scattering) to the transmis- sion that arises from the many-body self-energy [35, 70– 74], they provide a good approximation of the low-bias transport properties, even in the presence of strong cor- relations within the A subspace [34, 69].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' active molecule screening scattering region (a) (b) tip layer slab pz LOs FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (a) Schematics of the scattering region of the single- molecule junction, consisting of the molecular bridge and the Au electrodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The screening region (R) and the active space within the molecule (A) are highlighted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (b) Detailed struc- ture of pentadienyl and benzyl radical, and Au electrodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For pentadienyl, we also show schematically the mapping onto the C and N pz LOs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' IV.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' COMPUTATIONAL DETAILS The structures were set up with the atomic simula- tion environment (ASE) software package [75] and the DFT calculations were performed with the GPAW pack- age [76–78].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We performed a geometry optimization, and the atomic positions were relaxed until the forces on each atom were below 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='001 Hartree/Bohr−1 (≈ 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='05 eV/˚A).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For converging the electron density, we used an LCAO double-ζ basis set, with a grid spacing of 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='2 ˚A, and the Perdew–Burke–Ernzerhof exchange-correlation func- tional [79].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For the electron transport calculations, we followed the method described in [68].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The leads were modeled by a three-layer-thick Au(111) slab sampled with a 3×1×1 k-point grid along the transport direction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The scattering region also includes one Au slab and an additional Au layer terminated by a four-atom Au tip, to which the molecule anchoring groups are attached.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For all structures, the A subspace describing the effec- tive model is composed of the pz LOs of the C and N atoms of the molecular bridge, while the R subspace for the cRPA calculation of the screened interaction includes the molecule and also extends to the Au atoms of the tip (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 6 V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' INIGHTS FROM AB-INITIO SIMULATIONS In order to understand the many-body effects arising in the open-shell configuration, it is useful to recall some chemical and electronic properties of the pentadienyl and benzyl radicals, and how those are reflected by ab-initio simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In particular, we look at the spatial dis- tribution of the SOMO and at the ab-initio Coulomb parameters projected onto the LOs of the active space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Structure of the SOMO The pentadienyl radical (C5H7) is a linear molecule, and the shortest polyene radical after allyl.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It has three resonant structures.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In each structure, the unpaired elec- tron is hosted on one of the odd C atoms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The delo- calization of the unpaired electron along the molecular backbone contributes to the thermodynamical stability of the molecule [80, 81].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The structure we consider is obtained by substituting a hydrogen atom at each end of the chain by an amino group.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' By diagonalization of the AOs Hamiltonian in the subspace of the molecule, we find an eigenvalue just above the Fermi energy, corre- sponding to a partially occupied MO (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', the SOMO).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The pentadienyl resonant structures and the projection of the SOMO onto the pz LOs of the active space are shown in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2(a,b), respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The SOMO reflects the resonant structures, with the largest projection on the odd- and nodes at even- C atoms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It also displays a significant projection onto the anchoring groups, suggest- ing a strong coupling to the electrodes in the junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The benzene molecule (C6H6) is a cyclic aromatic hy- brocarbon and the archetypical building block for molec- ular electronics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For our analysis, we consider a related compound, the benzyl radical (C6H5CH2−), which is ob- tained by substituting a hydrogen atom with a methylene (CH2) group.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The benzyl radical is also stabilized by res- onance but, unlike pentadyenil, in both resonant struc- tures the unpaired electron is hosted on the benzylic C, as illustrated in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2(c).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We focus on the meta con- figuration, in which the amino groups are substituted at the 1,3-positions of the aromatic ring, while the methy- lene group is substituted in the 5-position, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', along the longer branch of the ring (see also Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' As expected, we find an eigenvalue lying at the Fermi energy, corre- sponding to the SOMO shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2(d).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The SOMO displays the largest projection at the pz LO of the ben- zylic C atom and displays nodes at every other C (simi- larly to pentadienyl).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, it does not extend to the anchoring groups, thus suggesting a weak coupling to the electrodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Coulomb parameters in the LO basis The partially screened Coulomb matrix projected onto the LO basis of the active space Uij = (UA)ij is shown in (c) (a) SOMO (pz LOs) SOMO (pz LOs) (b) (d) FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Resonances and SOMO isosurface (from LOs pz) of pentadienyl (a,b) and benzyl (c,d) radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In pentadienyl, the unpaired electron is hosted by one of the odd C of the polyene chain, which also display the largest contributions in the isosurface, while the even C correspond to nodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In both benzyl resonant structures, the unpaired electron is hosted by the benzylic C, and the isosurface displays nodes on every other C, similarly as in pentadienyl.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Isovalues: ±0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='03 au.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 1 2 3 4 5 (b) N C C C C C C C N N C C C C C C C N (a) N N C C C C C C C C C C N N FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Partially screened Coulomb parameters Uij = (UA)ij in the LO basis for the pentadienyl (a) and the benzyl (b) radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 3(a,b) for the pentadienyl and the benzyl radicals, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In both cases, the intra-orbital couplings Uii are in the range of 4–5 eV and are slightly stronger for the atoms farther away from the metallic Au electrons, due to the weaker screening effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Similar values of the Coulomb repulsion are found for the anchoring groups.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, as we shall see later, while the Cpz LOs are close to half-filling the Npz LOs are almost full, resulting in weak correlation effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' VI.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' ELECTRON TRANSPORT We start our analysis by looking at the electron trans- port properties of the pentadienyl and benzyl junctions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In particular, we compare the predictions of DFT and many-body simulations, where the Coulomb repulsion is treated at different levels of approximation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7CH2 CH2 CH H7CH2 CH2 CH H7CH2 CH2 CH H7CH2 CH2 CH H7CH2 CH2 CH H7 A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Pentadienyl Within DFT, the transmission function displays a res- onance close to the Fermi energy (denoted by EF ) corre- sponding to ballistic transport through the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The resonance is found at ϵSOMO = 70 meV and has a width ΓSOMO ≈ 300 meV, reflecting a significant hybridization of the SOMO with the states of the electrodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The slight misalignment between the SOMO resonance and EF , yield a conductance G = 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='7 × 10−1 G0 in each spin channel, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 4(a), This scenario changes as the SOMO resonance is split due to the Coulomb repulsion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, depending on the splitting mechanism, we ob- serve fundamentally different transport properties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within spin-unrestricted R-DMFT calculations, the spin rotational symmetry is broken.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The doublet de- generacy is lifted as the SOMO is split into an occu- pied state in the majority-spin channel (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', ↓-SOMO) and an unoccupied state in the minority-spin channel (↑- SUMO).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This approximation yields a magnetic insulator with a spin gap ∆s ≈ 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='3 eV and a magnetic moment ⟨Sz⟩ ≃ 1/2 due to the single unpaired electron.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The spin-dependent splitting of a transmission feature, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', a resonance [16, 17, 82] or an antiresonance [30, 31], has been suggested as a suitable mechanism for the realiza- tion of organic spin filters.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For pentadienyl, the splitting is approximately symmetric around the Fermi level, thus yielding a similar conductance in the two spin channels G↑ = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='9 × 10−2 G0 and G↓ = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 × 10−2 G0 and low spin-filtering efficiency.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The spin-unrestricted R-DMFT transmission functions are shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 4(a) .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Another possible mechanism to split the SOMO is ob- tained without lifting the spin degeneracy (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', within 10-4 10-2 1 2 1 0 1 2 R-DMFT R-DMFT 10-6 10-4 10-2 1 2 1 0 1 2 R-DMFT ED DFT (a) (b) node FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Electron transmission function through the pentadi- enyl radical junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' DFT predicts a SOMO resonance close to EF .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Taking into account the Coulomb repulsion beyond restricted DFT yields: (a) a splitting of the resonance into ↓-SOMO and ↑-SUMO due to spin-symmetry breaking;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (b) a splitting of the resonance without symmetry breaking and a transmission node due to many-body effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' either R-DMFT or ED).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In this case, we find that the SOMO transmission resonance is split, revealing an un- derlying transmission node, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 4(b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, many- body calculations predict a strong suppression of the con- ductance, by several order of magnitude, in stark contrast with the single-particle picture, in which electron trans- port is dominated by a nearly-resonant ballistic channel.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Note that the splitting is substantially larger in ED than in R-DMFT, and considering that the antiresonance is not aligned with EF , it also results in a much stronger suppression of the conductance G = 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='1 × 10−4 G0 (ED) versus G = 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='9×10−1 G0 (R-DMFT).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This suggests that non-local effects play an important role, as it can be ex- pected in low-dimensional systems [27, 32].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Since a linear π-conjugated molecule does not display any topological node, the pentadienyl node has been sug- gested to arise from destructive interference between dif- ferent charged states of the molecule [14].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In Sec.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' VII, we discuss in detail the microscopic mechanism responsible for the splitting of the SOMO and for the transmission node, and show that they are intertwined.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Benzyl In the case of benzene single-molecule junctions, there is more than one possible configuration for the ring to bridge the electrodes, depending on the position of the amino anchoring groups.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We focus on the meta configu- ration (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', amino groups substituted at the 1,3-positions of the aromatic ring) which is particularly relevant in the context of molecular electronics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within DFT, the transmission function displays two striking features which can be readily identified in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 5(a,b): a narrow asymmetric Fano resonance at ϵFano < 10 meV, close to EF , and a wide antiresonance at ϵDQI ≈ −0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='8 eV.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Both features originate from quan- tum interference (QI) effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Clarifying the nature of the resonances and highlighting their differences, will prove helpful in understanding how electronic correlations af- fect the transport properties and to shed light on the underlying microscopic mechanism.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Fano resonance has a characteristic asymmetric line shape and arises from the QI between the SOMO, which is mostly localized at the benzylic C atom, and the delocalized MOs on the molecular backbone, which have a strong overlap with the states of the metallic Au electrodes [83–85].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The antiresonance is the hallmark of destructive QI in the meta configuration and it is well- established in the literature, from both the experimen- tal [86–88] and theoretical [89–93] points of view.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It arises from the interference between the HOMO and LUMO of the ring itself [93].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' There is a subtle interplay between the antiresonance and the functional groups (not necessarily radical).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It is well-established that substituents and ad- sorbates affect the relative position of destructive inter- ference features with respect to the Fermi energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The chemical control of the antiresonance can be exploited 8 10-4 10-2 1 2 1 0 1 2 10-4 10-2 1 2 1 0 1 2 R-DMFT ED DFT R-DMFT R-DMFT (a) (b) Fano DQI FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Electron transmission function through the benzyl radical junction, displaying the Fano and antiresonance originating by quantum interference effects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (a) Breaking the spin symmetry results in the spin-splitting of both the Fano and the DQI features.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (b) Including many-body effects beyond DFT, the Fano resonance is split (without symmetry-breaking) while the DQI antiresonance is shifted to lower energies.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' for a wide range of applications ranging from nanoelec- tronics [94] to chemical sensing [95, 96] In principle, the position of the antiresonance is also influenced by the substitution position in the ring (see, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', [94] and refer- ences therein), but this effect is of marginal relevance to the scope of the present work.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Fano resonance is indeed the transport signa- ture of the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, in contrast to pentedienyl, where the SOMO is delocalized along the molecular back- bone and dominates the electron transport, in benzyl, the SOMO is mostly localized on the methyl functional group.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It is therefore interesting to investigate the effect of the Coulomb repulsion and highlight the differences between the two cases.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within restricted DFT simula- tions, the narrow Fano resonance is partially concealed by the wider QI antiresonance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Breaking the spin symmetry within spin-unrestricted R-DMFT yields a pair of spin- split Fano resonances, as shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 5(a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In the ma- jority spin channel, ϵ↑ Fano < 0 falls within the transmis- sion depletion caused by the antiresonance and the asym- metric Fano profile is clearly observable.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Its counter- part in the minority spin channel is found above EF , i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', ϵ↓ Fano > 0, and is still mostly concealed by the background transmission.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Interestingly, the spin-symmetry breaking also induces spin-resolved QI antiresonances [30, 31, 97] but the splitting ϵ↓ DQI − ϵ↑ DQI is however weaker than in the Fano case, since the spin imbalance yields ⟨Sz⟩ ≃ 1/2 on the pz LO of the benzylic C, and a weaker magneti- zation in the rest of the molecule.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Not allowing breaking the spin symmetry in the many- body simulations reveal another scenario, as shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 5(b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The difference is twofold.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We observe a split- ting of the Fano resonance in both R-DMFT and ED (with the ED splitting being significantly larger) but no splitting is detected for the QI antiresonance, which is rather shifted further away from EF .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This suggests that the microscopic mechanism behind the splitting with and without spin-symmetry breaking are fundamentally dif- ferent, as it distinguishes between the two QI features.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Moreover, in contrast to the case of pentadienyl, the split- ting of the SOMO in benzyl does not result in a strong suppression of the transmission within the SOMO-SUMO gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The two observations above are deeply connected, and eventually, they can both be rationalized in terms of the spatial distribution of the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' VII.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' MICROSCOPIC MECHANISM A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Splitting of the SOMO So far, we have seen that the Coulomb repulsion in- duces a splitting of the SOMO of the organic radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In order to gain a deeper understanding of the electronic mechanism behind the splitting, and how it affects the transport properties of the junction, it is useful to look at the retarded self-energy in the LO basis Σij = (ΣA)ij, corresponding to ΣED A and Σσ,R−DMFT A in Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (13, 20), respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The many-body effects encoded in the self- energy can be rationalized by interpreting the real part as an energy-dependent level shift, and the imaginary part as an effective electron-electron scattering rate.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We argue that the mechanism discussed in the following is a common feature of organic radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Therefore, we dis- cuss the pentadienyl and benzyl radicals in parallel and highlight the differences whenever necessary.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In order to compare the different approximations, it is convenient to look at the trace of the self-energy ma- trix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within spin-unrestricted R-DMFT, which is shown in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 6(a,d), the real part of the self-energy is weakly energy-dependent around EF , and determines a shift of the SOMO resonance in opposite directions for the two spin polarizations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The imaginary part is negligible (not shown) resulting in highly coherent SOMO and SUMO electronic excitations below and above EF .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Note that the ground state of spin-unrestricted R-DMFT is two- fold degenerate, and it is invariant under a flip of all spins: {σi} → {¯σi}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This picture is qualitatively anal- ogous to what one can expect also at the single-particle level, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', within DFT+U.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Many-body effects are weak, and the dominant effect arises from the spin-symmetry breaking, as both radicals are magnetic insulators with a 9 6 4 2 0 2 60 40 20 0 20 4 2 0 2 R-DMFT ED R-DMFT R-DMFT 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 1 30 20 10 0 10 80 60 40 20 0 20 40 1 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 12 10 8 6 R-DMFT ED pentadienyl benzyl (a) (d) (b) (e) (c) (f) R-DMFT R-DMFT FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Trace of the retarded self-energy Tr[Σ(E)] in the LO basis for the pentadienyl (a,b,c) and benzyl (d,e,f) radicals (the real and imaginary parts are denoted by solid and dashed lines, respectively).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within spin-unrestricted R-DMFT (a,d) the self-energy displays a weakly energy-dependent real part, which is different in each spin sector, while the imaginary part is negligible (not shown).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within both R-DMFT (b,e) and ED (c,f) the self-energy is dominated by a single resonance at energy ϵr (denoted by a solid grey line).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' spin SOMO-SUMO gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The scenario is completely different within restricted R-DMFT and ED, as shown in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 6(b,c,e,f).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' There, the self-energy is dominated by a single resonance and its energy dependence can be well described within a one- pole approximation (OPA) ΣOPA(E) = a E − EF − ϵr + ıγ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (28) The OPA self-energy has a Lorentzian shape, where ϵr and γ denote the resonant energy and the width of the resonance, whereas a controls the amplitude of the curve.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The imaginary part of the self-energy plays the role of a giant electron-electron scattering rate and sup- presses electronic excitations around ϵr ≃ ϵSOMO, while the real part redistributes the spectral weight towards higher energies.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This many-body mechanism, akin to the Mott metal-to-insulator transition as described within DMFT [42], is at the origin of the splitting of the SOMO resonance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In organic radicals, the following hierarchy of emergent energy scales is realized: ΓSOMO ≪ ∆ <∼ Uscreened, where the typical energy scale associated with the screened Coulomb repulsion Uscreened significantly exceeds the nar- row width of the SOMO resonance (∼ 10–100 meV), and the HOMO-LUMO single-particle gap ∆ controlled by the C-C π-bonds (∼ eV).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This sets the electrons in the SOMO deep within the strongly correlated regime.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Such a general condition suggests this mechanism to be common to organic radicals with a single unpaired elec- tron.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Multi-radical molecules [98] and networks [99], may display different electronic and transport properties due to effective interactions between the unpaired elec- trons [7, 18–20].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Spatial structure of the electronic correlations While R-DMFT and ED seem to qualitatively describe the same many-body mechanism for the splitting of the SOMO, it is also interesting to look at the whole self- energy matrix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' As discussed in Sec.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' III C, within ED all elements Σij ̸= 0, whereas within R-DMFT Σij ∝ δij.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Remarkably, all elements of the self-energy (irrespectively of the approximation) are well described by the OPA with the same resonant energy ϵr, as shown in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7(a,e).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The off-diagonal elements (when non-zero) can have ei- ther sign since it is not determined by causality.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It is then easy to have a comprehensive look at the self-energy by plotting the matrix Σij(ϵr), as shown in Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7(c,d,g,h).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Indeed, looking at the ED self-energy matrix, clear pat- terns emerge.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Along the diagonal, some elements Σii are significantly larger than the others (note the logarithmic scale), and this asymmetry is mirrored by the off-diagonal elements.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Upon close inspection, we can associate them with the pz LOs with the largest SOMO projection, thus confirming that the strongest many-body effects corre- late with the spatial distribution of the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within R-DMFT, we find an analogous pattern along the diag- onal, as indicated in the insets.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Despite its approximations (local Coulomb interaction, local correlations), it seems that R-DMFT tells qualita- tively the same story as the full ED simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This advocates for a substantially local character of the mi- croscopic mechanism, that can describe both the splitting of the SOMO and its consequences on electron transport, whereas non-local effects renormalize the splitting.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Implications for electron transport The many-body mechanism behind the splitting of the SOMO is common to both the pentadienyl and benzyl radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, its consequences on electron transport are dramatically different.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In order to understand why, it is necessary to combine the insights from DFT with the knowledge about the spatial and energy structure of the self-energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In pentadienyl,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' the SOMO is delocalized throughout the molecular backbone,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' and its large projection on the ' 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='4 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='6 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='7 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='8 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Component of the ED self-energy Σij(E) and its matrix representation at the resonant energy Im Σij(ϵr) in the LO basis for the pentadienyl (a,b,c,d) and benzyl (e,f,g,h) radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Each component of the self-energy (grey lines) is dominated by a single pole (a,b,e,f) at a resonant energy ϵr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Selected components (i, j) are highlighted (color lines) and are labeled according to their index in the matrix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The matrix structure of the self-energy reflects the spatial distribution of the SOMO, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', the largest local (Σii) and non-local (Σij̸=i) self-energy contributions are found for the LOs with the largest projections to the SOMO (denoted by arrows, see also Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within R-DMFT (d,h) the self-energy is diagonal in the LO indices Σij ∝ δij and displays the same pattern.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' pz LOs of the anchoring groups (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='2(a)) ensures a substantial overlap with the states in the metallic elec- trodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, there is a transmission channel across the junction through the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The pole of the self-energy results in a zero of the corresponding Green’s function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The suppression of the Green’s function hinders electron transport at that energy and is at the origin of the trans- mission node [30, 31].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In contrast, in the benzyl radical, the SOMO has negligible projection on the amino groups (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='2(d)) and transport is dominated by transmis- sion channels involving the frontier MOs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Therefore, the splitting of the Fano resonance weakly affects those chan- nels, and does not prevent the off-resonance transmission of electrons across the junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The above picture can be essentially reproduced within the following tight-binding (TB) three-orbital model, which is schematically represented in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Let us consider three orbitals (ℓ, c, r) that can be interpreted as the amino groups, left (ℓ) and right (r), and the central molecule (c).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Hamiltonian in such a basis reads H = � � ϵℓ t t′ t ϵc t t′ t ϵr � � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (29) The hybridization to the electrodes is mediated by the external (ℓ, r) orbitals and, for the sake of this discussion, it is assumed to be energy-independent: ΓL = � � Γ 0 0 0 0 0 0 0 0 � � , ΓR = � � 0 0 0 0 0 0 0 0 Γ � � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (30) The Hamiltonian of the isolated system can be diagonal- ized to obtain the eigenvalues ϵHOMO, ϵSOMO, and ϵLUMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In light of the results shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7, the Green’s func- tion of the device GD(z) = � z − H + ıΓL/2 + ıΓR/2 − ΣD(z) �−1 (31) is dressed with an OPA self-energy ΣD(z) = � � 0 0 0 0 ΣOPA(z) 0 0 0 0 � � (32) which acts on the central part (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 7(a,e) for a con- nection with the ab-initio simulations) and has a pole at ϵSOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within such a three-orbital model, the Landauer transmission in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' (26) simplifies to T(E) = Γ2|Gℓr(E)|2, (33) where Gℓr = (GD)ℓr is the upper-right element of the Green’s function, linking the orbitals connected to the 11 (c) 10-8 10-6 10-4 10-2 1 2 1 0 1 2 10-8 10-6 10-4 10-2 1 2 1 0 1 2 1 0 2 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 1 0 1 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 1 4 0 4 2 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='4 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 1 Fano splitting splitting node zero 1 (g) (d) (h) (e) (i) TB OPA TB OPA 1 (a) (b) (f) FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Schematic representation of the three-orbital TB model with its parameter, and form of the OPA self-energy (a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Weight distribution and eigenvalues of the TB MOs for scenarios representative of the pentadienyl (b) and benzyl (f) radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The transmission function (c,g) obtained without (grey lines) and with (blue lines) the OPA self-energy captures all relevant features of the DFT and many-body simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The Green’s function Gℓr is shown for specific energy ranges, which are relevant to explaining the spectral features associated with the HOMOs (d,h) and the SOMOs (e,i), as discussed in the text.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Model parameters [eV]: ϵ = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5, ϵc = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='25, a = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='25, Γ = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='05, γ = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='003, common to both scenarios, t = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5, t′ = 0 (b,c,d) and t = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='1, t′ = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='5 (e,f,g).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' electrodes, and describes the only transmission channel across the junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' For the sake of simplicity, one can take −ϵℓ = ϵr = ϵ, and ϵc ≪ ϵ, which together with a, Γ, and η are kept fixed, whereas we choose the parameters t and t′ to de- scribe two scenarios, which are representative of the pen- tadienyl and benzyl radicals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The results are shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8 and described in the following.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The physics of the pentadienyl radical can be repro- duced by choosing t <∼ ϵ and t′ = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The correspond- ing TB MOs are fairly delocalized throughout the sys- tem, as shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, electron transport happens through sequential hopping processes through the c orbital.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The transmission function, Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(c), dis- plays a SOMO resonance which is split by including the OPA self-energy, revealing a transmission node within the SOMO-SUMO gap.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The origin of the transmission node is ascribed to a zero of the Green’s function at the SOMO energy Gℓr(E ≃ ϵSOMO) [30, 31] as demonstrated in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(e).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Instead, with the choice of parameters t ≪ t′ <∼ ϵ, one can describe the physics of the benzyl radical, charac- terized by an orbital c, which is weakly coupled to the ℓ − r molecular backbone.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The corresponding SOMO is fairly localized on the central orbital, see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(f).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The transmission function displays a Fano resonance which is split by the OPA self-energy see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(g).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In contrast to the previous case, Gℓr does not have a zero, and trans- port is dominated by a transmission channel that bridges the electrodes through the direct ℓ-r hopping t′.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Finally, note that in both scenarios above, many-body effects are negligible for the HOMO and LUMO resonances (corre- sponding to states which are completely filled and empty, respectively) even when the “correlated” c orbital has a sizable hybridization with ℓ and r, cfr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 8(c,d,g,h).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, the three-orbital model can reproduce all fun- damental features of the radical junctions discussed in this work, and at the same time, provides a simple inter- pretation of the numerical simulations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' D.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Non-perturbative nature of the splitting Within ED and R-DMFT, the solution of the many- body problem (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', on the lattice or the auxiliary AIM) is numerically exact.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This means that the Coulomb repulsion is taken into account in a non-perturbative way.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' It is interesting to compare these results to a perturbative approach, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', within the GW approxima- tion [100, 101], which has been extensively and success- fully applied to molecules [102–107].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' However, the ques- tion arises to which extent many-body perturbation the- ory approaches are able to describe the physics of open- shell systems [108].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Within GW, the self-energy is com- puted to the lowest order in perturbation theory, as a convolution of the Green’s function and the screened in- 12 10-4 10-2 1 2 1 0 1 2 G0W0 GW (a) FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Electron transmission function through the pentadi- enyl radical junction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Both the G0W0 and the self-consistent GW approximations fail to predict the splitting of the SOMO, as described within ED and R-DMFT, cfr.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Fig 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' teraction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We compute the GW self-energy correction projected onto the A region Σ(z) = GA(z)WA, (34) as described in [68], and we consider the case of the pen- tadienyl radical without loss of generality.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' In Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' 9 we see that neither G0W0 nor the fully self- consistent GW approximation is able to induce a split- ting of the SOMO resonance, and the numerical simu- lations rather result in a shift of the corresponding res- onance above the Fermi energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Hence, the many-body techniques we propose to investigate open-shell molecules are not only sufficient but also necessary for our goal, whereas less sophisticated approaches fall short in de- scribing the electronic and transport properties arising from the strong electronic correlations within the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' VIII.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' CONCLUSIONS In this work, we have proposed a numerical method that that combines ab-initio with state-of-the-art many- body techniques and is able to address the complexity of a realistic chemical environment as well as electronic correlation effects beyond the single-particle picture.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' The deliverable of this project served to shed light on the mechanism governing the electronic and transport properties of quantum junctions with organic molecules in an open-shell configuration.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' By considering a linear and a cyclic radical molecule, we derive a general under- standing of the role of many-body effects in molecular radicals with a single unpaired electron, and we show that they have dramatic consequences on electron transport.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We establish the microscopic mechanism behind the splitting of the SOMO resonance and unravel a clear link between the space-time structure of electron- electron correlations and the spatial distribution of the SOMO.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' We demonstrate this by proposing a minimal model, which is capable of grasping the microscopic mechanism and thus reproducing all relevant features of the transmission properties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Our work will pave the path toward a deeper and more comprehensive understanding of strongly correlated electron physics at the nanoscale.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' ACKNOWLEDGEMENTS We thank J.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' Tomczak for valuable discussions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=' This research is supported by the Austrian Science Fund (FWF) through project P 31631 (A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', R.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='S.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=') and by the NCCR MARVEL funded by the Swiss National Science Foundation grant 51NF40-205602 (G.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content='G.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/5NAyT4oBgHgl3EQfcfcz/content/2301.00282v1.pdf'} +page_content=', D.' metadata={'source': 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K. Ghoshb, Saibal Rayc +aSchool of Basic Science, Swami Vivekananda University, Kanthalia, Barrackpore, West +Bengal, India +bDepartment of Basic Science & Humanities, Abacus Institute of Engineering and +Management, Magra, Chinchura, West Bengal, India +cCentre for Cosmology, Astrophysics and Space Science (CCASS), GLA University, +Mathura 281406, Uttar Pradesh, India +Abstract +The propagation of fully nonlinear ion acoustic solitary waves (IASW) in +a magneto-plasma with degenerate electrons investigated by Abdelsalam et +al. [[1] Physics Letters A 372 (2008) 4923]. Based on their work in the present +work, a rigorous and general analytical study is presented. This confirms +their implied assumption that (i) only hump and no cavity is possible and +(ii) for humps, the algebraic equation for the maximum density N obtained +by them determines it uniquely (naturally assumes N > 1). Here we confirm +analytically their assertion that N decreases with lx (the direction cosine of +the wave vector k along the x-axis) and N increases with the increase of the +Mach number (M). +Keywords: Waves; Plasmas; MHD; Hydrodynamics; Mach number +1. Introduction +Recently, the physics of an electron-positron-ion (EPI) plasma [2, 3, 4, 5, 6, +7] has received considerable attention, mainly due to its importance in many +systems in laboratory plasma as well as astrophysical arena. EPI plasma +Email addresses: moumita.indra93@gmail.com (Moumita Indra), +kkghosh1954@gmail.com (K. K. Ghosh), saibal.ray@gla.ac.in (Saibal Ray) +Orcid ID: 0000-0002-7900-7947 +Orcid ID: 0000-0002-5909-0544 +Preprint submitted to Chinese Journal of PhysicsReceived 2022 September 22; accepted 2022 month day + +exists in places such as active galactic nuclei (AGNs) [8, 9], pulsar magneto- +spheres [10, 11] and in many dense astronomical environments, namely, neu- +tron stars and white dwarfs [12, 13] which is supposed to play a key role in +understanding the origin and evolution of our entire universe [14]. This kind +of plasma may also be practically produced in laboratories [15, 16, 17, 18]. +Electrons and positrons are assumed relativistic and degenerate, follow- +ing the Fermi–Dirac statistics, whereas the warm ions are described by a +set of classical fluid equations with an individual charge of Zie, (Zi denotes +the ion-charge state, while e is the electron charge), subject to the influence +of the electrostatic potential φ. Quantum hydrodynamics +[23, 24, 25, 26], +which describes quantum systems within a hydrodynamic framework, was +first proposed by Madelung [19] and Bohm [20]. Although such a descrip- +tion is formally accurate for a single particle, Manfredi and Haas [21] later +expanded the idea to many-particle systems and it gained significant favour +in the areas of the quantum plasma community. +Considering the one-dimensional QHD model in the limit of the small +mass ratio of the charge carriers, Hass et al. [22] were the first to study +the ion-acoustic waves in unmagnetized quantum plasma. This model has +been used in various investigations by several authors [23, 24, 25, 26] where +generally a linear dispersion relation is derived in the linear approximation. +Thus, ion-acoustic waves (IAW), a fundamental mode in plasma environ- +ments, have been a subject of extensive research over several decades. Khan +and Haque [27] showed that in the small (linear) limit of quantum diffraction +parameter H (ratio of the plasmon energy to the Fermi energy), the system +behaves as the classical IAW whereas in the non-linear regime the system +behaves differently. One of the most interesting non-linear features of IAW +is the existence of ion-acoustic solitary waves (IASW) [28, 29]. +In the weakly nonlinear limit, the quantum plasma is shown to support +waves described by a deformed Korteweg–de Vries (KdV) equation which +depends in a non-trivial way on the quantum parameter H. However, in the +fully non-linear regime, the system exhibits travelling waves which show a +periodic pattern. Hence there are two main approaches used to investigate +IASWs, viz., the reductive perturbation technique (KdV method) [30] and +the pseudo-potential technique for large-amplitude solitary waves (Sagdeev +method) [31]. The theory of solitons in magneto-plasma was greatly improved +by an intriguing work by Abdelsalam et al. [1] on completely non-linear IASW +travelling obliquely to an external magnetic field in a collision-less dense +Thomas-Fermi magneto-plasma with degenerate electrons. +2 + +The degenerate electrons in the above scenario may be described using +the Thomas-Fermi approximation [32, 33] whereas the ion component can +be thought of as a classical gas. They have obtained an energy balance-like +equation involving the Sagdeev potential as follows: +1 +2 +�dn +dη +�2 ++ V (n) = 0, +(1) +where Sagdeev-like pseudo-potential V (n) is given by +V (n) = +9n6 +2(5an8/3 − 3)2[5an8/3 − 2an5/3−3a+1 +M2 ++1 − 2n +M2n2 + cM2(an10/3 − 2an5/3 − 2 +9 + a + 5)], +(2) +where +a = +3 +5M2, +(3) +c = 3lx +2 +5M2, +(4) +η = lxx + lyy − Mt, lx +2 + ly +2 = 1 and n = n(η). +Here M is the Mach number, lx and ly are the direction cosines of the +wave vector k along the x and y axes respectively, n(= ne +no) where ne is the +electron density and no is the unperturbed electron density with ni as the +ion density. +As indicated by Abdelsalam et al. [1], the existence of IASW’s for which +1 ≤ n ≤ N and dn +dη = 0 at n = 1, N, +(5) +requires the following equations and inequality: +V (n)|n=1 = 0, +(6) +dV +dn |n=1 = 0, +(7) +3 + +d2V +dn2 |n=1 < 0, +(8) +and V (n)|n=N = 0. +(9) +Abdelsalam et al. [1] noted that Eqs. (6) and (7) are automatically satis- +fied by Eq. (2) while the inequality (8) is satisfied if and only if +lx < M < 1, i.e., c < 0.6 < a, +in view of Eqs. (3) and (4). +For the nonlinear dispersion relation, Eq. +(9), they have numerically +solved it for several specific values of lx (lx = 0.66, 0.68, 0.7) and on that +basis argued that if Eq. (9) can be rewritten as +N = N(lx, M), +(10) +where the maximum density N is a decreasing function of lx, i.e., ∂N +∂lx < 0 +and N is an increasing function of M, i.e., ∂N +∂M > 0. +However, in the present work our motivation is to solve the problem of +Abdelsalam et al. [1] with an analytical methodology under a more general +treatment. For this we have considered a different format and have shown +that some of their outcomes can be retrieved with a convincing way and can +be demonstrated valid in the physical realm. +2. An analytical methodology +Putting n = x3 the equations (1) and (2) can be rewritten as +�dx +dη +�2 ++ x(1 − x)f(x, lx, M) +(5ax8 − 3)2 += 0, +(11) +where +f(x, lx, M) = (1 + x + x2)2 ++9lx +2x6(1 + x + x2 + x3 + x4)2 +25M4 +−3x6(3 + 6x + 4x2 + 2x3) +5M2 +−3lx +2x3(2 + 4x + 6x2 + 3x3) +5M2 +. +(12) +4 + +Equations (5) and (9) are now rewritten as +dx +dη = 0 at x = 1, N1/3, +(13) +f(N1/3, lx, M) = 0. +(14) +The above Eqs. (3) and (4) and the inequality (8) remain unchanged +except Eq. (9) which is to be replaced by Eq. (14). In other words, the +question now is whether Eq. +(14) can determine N (or x) uniquely. +To +answer this one needs the following observations on f(x, lx, M). +3. Observations on f(x, lx, M) +3.1. Observation 1: +(i) f(0, lx, M) = 1, +(ii) f(1) = (3 − 5a)(3 − 5c) < 0, +(iii) f(∞) > 0. +Proof: Trivial. +3.2. Observation 2: +For given a and c there exist a unique pair of (α, β) such that +f(x, lx, M) > 0, for 0 < x < β, +f(β, lx, M) = 0, +f(x, lx, M) < 0, for β < x < α, +f(α, lx, M) = 0, +and f(x, lx, M) > 0 for x > α, +where 0 < β < 1 < α. +Corollary: +∂f(x, lx, M) +∂x +> 0 at x = α. +Proof: Trivial. +5 + +3.3. Observation 3: +f(x, lx, M) < 0 at x = ( 3 +5a)1/8. +Proof: See Appendix. +Corollary: +β < ( 3 +5a)1/8 < 1. +Proof: Trivial from observation 2. +3.4. Observation 4: +∂f(x, lx, M) +∂lx +> 0 for x > 1. +Proof: See Appendix. +3.5. Observation 5: +For any α > 1 there exists lx and M that satisfy f(α, lx, M) = 0 and also +satisfy the inequality (9). +Proof: See Appendix. +With these observations one can uniquely determine x (or N) (> 1) satis- +fying Eq. (12) and also deals with decreasing/increasing feature of x (or N) +as well as for increase of lx or M. These are answered as follows. +4. Proof of uniqueness of N +From the Observation 1, we note that f(1) < 0 and f(∞) > 0. Owing to +the continuity of f(x) there exists one x, such that f(x1) = 0 and x1 > 1. If +possible, let there exist x1 and x2 such that +f(x1) = f(x2) = 0 and x2 > x1 > 1. +(15) +6 + +From Eq. (15), applying Rolle’s theorem, there exists x3 and x4, such +that +f ′(x3) = f ′(x4) = 0 and x2 > x4 > x1 > x3 > 1. +(16) +But f ′(x) is a polynomial of degree 13 such that f ′(−∞) < 0, f ′(0) > 0, +f ′(1) < 0 and f ′(∞) > 0. So we can see that f ′(x) vanishes only for x > 1 +which contradicts Eq. (16). +Hence there exists a unique x(> 1) such that f(x, lx, M) = 0, i.e. there +exists unique N(> 1) satisfying Eq. (9). +Now, we have to show analytically that the maximum density N is a +decreasing function of lx and is an increasing function of M. Differentiating +both sides of Eq. (12) with respect to M, one gets +∂f +∂M < 0, for x > 1. +(17) +For +∂f +∂M = +6x3 +25M5[−6l2 +xx3(1 + x + x2 + x3 + x4)2 + 5x3M2(3 + 6x + 4x2 + 2x3) ++5l2 +xM2(2 + 4x + 6x2 + 3x3)] +< +6x3 +25M5[−6x3(1 + x + x2 + x3 + x4)2 + 5x3(3 + 6x + 4x2 + 2x3) ++5l2 +x(2 + 4x + 6x2 + 3x3)] +(since lx < M < 1) += +6x3 +25M5[−18(x9 − x4) − 30(x7 − x2) − 17(x8 − x3) − 7(x8 − x) +−13(x6 − x) − 10(x10 − 1) − 2(x10 − x5) − x6 − 6x11] +< 0, +for x > 1. +(18) +From Eqs. (14) and (11), we obtain +∂N1/3 +∂lx += − +∂f +∂lx +∂f +∂N1/3 +and ∂N1/3 +∂M += − +∂f +∂M +∂f +∂N1/3 +, +which gives +∂N1/3 +∂lx +∂N1/3 +∂M += +∂f +∂lx +∂f +∂M +, i.e., +∂N +∂lx +∂N +∂M += +∂f +∂lx +∂f +∂M +, +i.e., ∂N +∂lx +< 0 for x > 1, +(using observation 4 and Eq. (17)). +7 + +Again from Eq. (14), we have +∂N1/3 +∂lx +∂lx +∂M +∂M +∂N1/3 = −1, +and 1 +3N−2/3∂N +∂lx +5 +3MC = −1 +3N−2/3 ∂N +∂M , +(by Observation (4)) +i.e., ∂N +∂M > 0 for +x > 1 +(since, ∂N +∂lx < 0). +4.1. Proof of Observation 5: +From the observation 1 one can see that the equation f(x, lx, M) = 0 has +at least one root between 0 and 1 and one root greater then 1. Also one can +note that f(x, lx, M) regarded as a polynomial in x has two changes of sign +and hence by Descarte’s rule of sign has at most two positive roots. Hence +equation f(x, lx, M) = 0 has exactly one root between 0 and 1 and exactly +one root greater than 1 which are called β and α respectively. The continuity +of f(x, lx, M) ensures that the remaining part of the observation is true. +5. Conclusion +In the present work our main motivation was to provide an analytically +performed rigorous base of the study of Abdelsalam et al. [1] on the propaga- +tion of fully non-linear ion-acoustic waves in a collision-less magneto-plasma +with degenerate electrons. The outcomes of the investigation are interesting +and some explicit features can be exhibited as follows: +(1) only hump and no cavity is possible; +(2) for humps, (i) the algebraic equation for the maximum density N ob- +tained by them determines it uniquely (under the assumption N > 1), (ii) N +decreases with lx (the direction cosine of the wave vector k along the x-axis) +and (iii) N increases with the increase of the Mach number (M). All these +results yield simply from the maximum density N which can be uniquely +determined by Eq. (9) under the constraint N > 1. +Another motivation of the present work is related to the astrophysical +relevance of an EPI plasma, especially in the cases of AGNs [8, 9], pulsar +magneto-spheres [10, 11], neutron stars and white dwarfs [12, 13]. +A su- +porting and confirmirmational results of Abdelsalam et al. [1] therefore will +enhance to understand deeply the structural phenomena occuring in differ- +ent astrophysical systems. In this connection we would like to mention the +8 + +very recent work of Piotrovich et al. [9] where they have hypothesized that +the AGNs are wormhole mouths rather than supermassive black holes. Es- +sentially due to bizzare gravitational formation wormholes may emit gamma +radiation as a result of a collision of accreting flows inside it. Now the in- +teresting fact is that the radiation has a distinctive spectrum much different +from those of jets or accretion discs of AGNs. Hopefully an observation of +such radiation via the EPI and hence IASW would serve as evidence of the +existence of wormholes. +Appendix +Proof of Observation 3 +Let +� 3 +5a +�1/8 = γ so that a = +3 +5γ8 +9 + +Then at x = γ +f(x, a, c) = (1 + γ + γ2)2 + 3c +5γ2(1 + γ + γ2 + γ3 + γ4)2 +− 3 +5γ2(3 + 6γ + 4γ2 + 2γ3) − cγ3(2 + 4γ + 6γ2 + 3γ3 += +1 +5γ2[(5γ2(1 + γ + γ2)2 − 3(3 + 6γ + 4γ2 + 2γ3)) ++c(3(1 + γ + γ2 + γ3 + γ4)2 − 5γ5(2 + 4γ + 6γ2 + 3γ3))] += +1 +5γ2[(−9 − 18γ − 7γ2 + 4γ3 + 15γ4 + 10γ5 + 5γ6) ++c(3 + 6γ + 9γ2 + 12γ3 + 15γ4 + 2γ5 − 11γ6 − 24γ7 − 12γ8)] += +1 +5γ2[(γ − 1)(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5)] +−c(γ − 1)(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7) += γ − 1 +5γ2 [(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5) +−c(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7)] +< γ − 1 +5γ2 [(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5) +−3(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7)] +≤ γ − 1 +25γ2 [36 + 108γ + 116γ2 + 60γ3 − 60γ4 − 116γ5 − 108γ6 − 36γ7] +< 0 +if γ < 1 +Proof of Observation 4 +∂f(x, a, c) +∂c += ax6(1 + x + x2 + x3 + x4)2 − x3(2 + 4x + 6x2 + 3x3) +≥ x3 +5 [3x3(1 + x + x2 + x3 + x4)2 − 5(2 + 4x + 6x2 + 3x3)] (since, a = +3 +5M2) += x3 +5 [3x3(1 + 2x + 3x+4x3 + 5x4 + 4x5 + 3x6 + 2x7 + x8) − 5(2 + 4x + 6x2 + 3x3)] += x3 +5 [−10 − 20x − 30x2 − 12x3 + 6x4 + 9x5 + 12x6 + 15x7 + 12x8 + 9x9 + 6x10 + 3x11) +> 0 for x > 1 +10 + +Declaration of competing interest +The authors declare that they have no known competing financial inter- +ests or personal relationships that could have appeared to influence the work +reported in this paper +acknowledgement +One of the authors, KKG would like to thank the authority of Abacus +Institute of Engineering and Management for all the facilities and encourage- +ment. We all are grateful to the anonymous referee for the useful comments +which have enhanced the quality of the paper. +References +[1] U. M. Abdelsalam, W. M. Moslem, S. Ali, P. K. Shukla, Exact electro- +static solitons in a magnetoplasma with degenerate electrons, Phys. Lett. +A 372 (2008) 4923-4926. https://doi.org/10.1016/j.physleta.2008.04.065. +[2] V. I. Berezhiani, L. N. Tsintsadze, and P. K. Shukla, Nonlinear +interaction of an intense electromagnetic wave with an unmagne- +tized electron—positron plasma, J. Plasma Phys. 48 (1992) 139-143. +https://doi.org/10.1017/S0022377800016421. +[3] V. I. Berezhiani, L. N. Tsintsadze, and P. K. Shukla, Influence of electron- +positron pairs on the wakefields in plasmas, Phys. 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March (Eds.), Theory of the +Inhomogeneous Electron Gas, Plenum (New York, 1983). +14 + diff --git a/C9AzT4oBgHgl3EQfGfvE/content/tmp_files/load_file.txt b/C9AzT4oBgHgl3EQfGfvE/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..086b357d35c68f26acaae480a4ff7fde2ae3bf1a --- /dev/null +++ b/C9AzT4oBgHgl3EQfGfvE/content/tmp_files/load_file.txt @@ -0,0 +1,534 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf,len=533 +page_content='arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='01030v1 [physics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='plasm-ph] 3 Jan 2023 Analytical study of ion-acoustic solitary waves in a magnetized plasma with degenerate electrons Moumita Indraa, K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Ghoshb,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Saibal Rayc aSchool of Basic Science,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Swami Vivekananda University,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Kanthalia,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Barrackpore,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' West Bengal,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' India bDepartment of Basic Science & Humanities,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Abacus Institute of Engineering and Management,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Magra,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Chinchura,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' West Bengal,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' India cCentre for Cosmology,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Astrophysics and Space Science (CCASS),' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' GLA University,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Mathura 281406,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Uttar Pradesh,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' India Abstract The propagation of fully nonlinear ion acoustic solitary waves (IASW) in a magneto-plasma with degenerate electrons investigated by Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [[1] Physics Letters A 372 (2008) 4923].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Based on their work in the present work, a rigorous and general analytical study is presented.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' This confirms their implied assumption that (i) only hump and no cavity is possible and (ii) for humps, the algebraic equation for the maximum density N obtained by them determines it uniquely (naturally assumes N > 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Here we confirm analytically their assertion that N decreases with lx (the direction cosine of the wave vector k along the x-axis) and N increases with the increase of the Mach number (M).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Keywords: Waves;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Plasmas;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' MHD;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Hydrodynamics;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Mach number 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Introduction Recently, the physics of an electron-positron-ion (EPI) plasma [2, 3, 4, 5, 6, 7] has received considerable attention, mainly due to its importance in many systems in laboratory plasma as well as astrophysical arena.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' EPI plasma Email addresses: moumita.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='indra93@gmail.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='com (Moumita Indra), kkghosh1954@gmail.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='com (K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Ghosh), saibal.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='ray@gla.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='ac.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='in (Saibal Ray) Orcid ID: 0000-0002-7900-7947 Orcid ID: 0000-0002-5909-0544 Preprint submitted to Chinese Journal of PhysicsReceived 2022 September 22;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' accepted 2022 month day exists in places such as active galactic nuclei (AGNs) [8, 9], pulsar magneto- spheres [10, 11] and in many dense astronomical environments, namely, neu- tron stars and white dwarfs [12, 13] which is supposed to play a key role in understanding the origin and evolution of our entire universe [14].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' This kind of plasma may also be practically produced in laboratories [15, 16, 17, 18].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Electrons and positrons are assumed relativistic and degenerate, follow- ing the Fermi–Dirac statistics, whereas the warm ions are described by a set of classical fluid equations with an individual charge of Zie, (Zi denotes the ion-charge state, while e is the electron charge), subject to the influence of the electrostatic potential φ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Quantum hydrodynamics [23, 24, 25, 26], which describes quantum systems within a hydrodynamic framework, was first proposed by Madelung [19] and Bohm [20].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Although such a descrip- tion is formally accurate for a single particle, Manfredi and Haas [21] later expanded the idea to many-particle systems and it gained significant favour in the areas of the quantum plasma community.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Considering the one-dimensional QHD model in the limit of the small mass ratio of the charge carriers, Hass et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [22] were the first to study the ion-acoustic waves in unmagnetized quantum plasma.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' This model has been used in various investigations by several authors [23, 24, 25, 26] where generally a linear dispersion relation is derived in the linear approximation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Thus, ion-acoustic waves (IAW), a fundamental mode in plasma environ- ments, have been a subject of extensive research over several decades.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Khan and Haque [27] showed that in the small (linear) limit of quantum diffraction parameter H (ratio of the plasmon energy to the Fermi energy), the system behaves as the classical IAW whereas in the non-linear regime the system behaves differently.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' One of the most interesting non-linear features of IAW is the existence of ion-acoustic solitary waves (IASW) [28, 29].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' In the weakly nonlinear limit, the quantum plasma is shown to support waves described by a deformed Korteweg–de Vries (KdV) equation which depends in a non-trivial way on the quantum parameter H.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' However, in the fully non-linear regime, the system exhibits travelling waves which show a periodic pattern.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Hence there are two main approaches used to investigate IASWs, viz.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', the reductive perturbation technique (KdV method) [30] and the pseudo-potential technique for large-amplitude solitary waves (Sagdeev method) [31].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' The theory of solitons in magneto-plasma was greatly improved by an intriguing work by Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1] on completely non-linear IASW travelling obliquely to an external magnetic field in a collision-less dense Thomas-Fermi magneto-plasma with degenerate electrons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 2 The degenerate electrons in the above scenario may be described using the Thomas-Fermi approximation [32, 33] whereas the ion component can be thought of as a classical gas.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' They have obtained an energy balance-like equation involving the Sagdeev potential as follows: 1 2 �dn dη �2 + V (n) = 0, (1) where Sagdeev-like pseudo-potential V (n) is given by V (n) = 9n6 2(5an8/3 − 3)2[5an8/3 − 2an5/3−3a+1 M2 +1 − 2n M2n2 + cM2(an10/3 − 2an5/3 − 2 9 + a + 5)], (2) where a = 3 5M2, (3) c = 3lx 2 5M2, (4) η = lxx + lyy − Mt, lx 2 + ly 2 = 1 and n = n(η).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Here M is the Mach number, lx and ly are the direction cosines of the wave vector k along the x and y axes respectively, n(= ne no) where ne is the electron density and no is the unperturbed electron density with ni as the ion density.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' As indicated by Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1], the existence of IASW’s for which 1 ≤ n ≤ N and dn dη = 0 at n = 1, N, (5) requires the following equations and inequality: V (n)|n=1 = 0, (6) dV dn |n=1 = 0, (7) 3 d2V dn2 |n=1 < 0, (8) and V (n)|n=N = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9) Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1] noted that Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (6) and (7) are automatically satis- fied by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (2) while the inequality (8) is satisfied if and only if lx < M < 1, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', c < 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='6 < a, in view of Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (3) and (4).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' For the nonlinear dispersion relation, Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9), they have numerically solved it for several specific values of lx (lx = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='66, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='68, 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='7) and on that basis argued that if Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9) can be rewritten as N = N(lx, M), (10) where the maximum density N is a decreasing function of lx, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', ∂N ∂lx < 0 and N is an increasing function of M, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', ∂N ∂M > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' However, in the present work our motivation is to solve the problem of Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1] with an analytical methodology under a more general treatment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' For this we have considered a different format and have shown that some of their outcomes can be retrieved with a convincing way and can be demonstrated valid in the physical realm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' An analytical methodology Putting n = x3 the equations (1) and (2) can be rewritten as �dx dη �2 + x(1 − x)f(x, lx, M) (5ax8 − 3)2 = 0, (11) where f(x, lx, M) = (1 + x + x2)2 +9lx 2x6(1 + x + x2 + x3 + x4)2 25M4 −3x6(3 + 6x + 4x2 + 2x3) 5M2 −3lx 2x3(2 + 4x + 6x2 + 3x3) 5M2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (12) 4 Equations (5) and (9) are now rewritten as dx dη = 0 at x = 1, N1/3, (13) f(N1/3, lx, M) = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (14) The above Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (3) and (4) and the inequality (8) remain unchanged except Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9) which is to be replaced by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (14).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' In other words, the question now is whether Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (14) can determine N (or x) uniquely.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' To answer this one needs the following observations on f(x, lx, M).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observations on f(x, lx, M) 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observation 1: (i) f(0, lx, M) = 1, (ii) f(1) = (3 − 5a)(3 − 5c) < 0, (iii) f(∞) > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: Trivial.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observation 2: For given a and c there exist a unique pair of (α, β) such that f(x, lx, M) > 0, for 0 < x < β, f(β, lx, M) = 0, f(x, lx, M) < 0, for β < x < α, f(α, lx, M) = 0, and f(x, lx, M) > 0 for x > α, where 0 < β < 1 < α.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Corollary: ∂f(x, lx, M) ∂x > 0 at x = α.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: Trivial.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 5 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observation 3: f(x, lx, M) < 0 at x = ( 3 5a)1/8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: See Appendix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Corollary: β < ( 3 5a)1/8 < 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: Trivial from observation 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observation 4: ∂f(x, lx, M) ∂lx > 0 for x > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: See Appendix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Observation 5: For any α > 1 there exists lx and M that satisfy f(α, lx, M) = 0 and also satisfy the inequality (9).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof: See Appendix.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' With these observations one can uniquely determine x (or N) (> 1) satis- fying Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (12) and also deals with decreasing/increasing feature of x (or N) as well as for increase of lx or M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' These are answered as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof of uniqueness of N From the Observation 1, we note that f(1) < 0 and f(∞) > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Owing to the continuity of f(x) there exists one x, such that f(x1) = 0 and x1 > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' If possible, let there exist x1 and x2 such that f(x1) = f(x2) = 0 and x2 > x1 > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (15) 6 From Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (15), applying Rolle’s theorem, there exists x3 and x4, such that f ′(x3) = f ′(x4) = 0 and x2 > x4 > x1 > x3 > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (16) But f ′(x) is a polynomial of degree 13 such that f ′(−∞) < 0, f ′(0) > 0, f ′(1) < 0 and f ′(∞) > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' So we can see that f ′(x) vanishes only for x > 1 which contradicts Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (16).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Hence there exists a unique x(> 1) such that f(x, lx, M) = 0, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' there exists unique N(> 1) satisfying Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Now, we have to show analytically that the maximum density N is a decreasing function of lx and is an increasing function of M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Differentiating both sides of Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (12) with respect to M, one gets ∂f ∂M < 0, for x > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (17) For ∂f ∂M = 6x3 25M5[−6l2 xx3(1 + x + x2 + x3 + x4)2 + 5x3M2(3 + 6x + 4x2 + 2x3) +5l2 xM2(2 + 4x + 6x2 + 3x3)] < 6x3 25M5[−6x3(1 + x + x2 + x3 + x4)2 + 5x3(3 + 6x + 4x2 + 2x3) +5l2 x(2 + 4x + 6x2 + 3x3)] (since lx < M < 1) = 6x3 25M5[−18(x9 − x4) − 30(x7 − x2) − 17(x8 − x3) − 7(x8 − x) −13(x6 − x) − 10(x10 − 1) − 2(x10 − x5) − x6 − 6x11] < 0, for x > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (18) From Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (14) and (11), we obtain ∂N1/3 ∂lx = − ∂f ∂lx ∂f ∂N1/3 and ∂N1/3 ∂M = − ∂f ∂M ∂f ∂N1/3 , which gives ∂N1/3 ∂lx ∂N1/3 ∂M = ∂f ∂lx ∂f ∂M , i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', ∂N ∂lx ∂N ∂M = ∂f ∂lx ∂f ∂M , i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', ∂N ∂lx < 0 for x > 1, (using observation 4 and Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (17)).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 7 Again from Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (14), we have ∂N1/3 ∂lx ∂lx ∂M ∂M ∂N1/3 = −1, and 1 3N−2/3∂N ∂lx 5 3MC = −1 3N−2/3 ∂N ∂M , (by Observation (4)) i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=', ∂N ∂M > 0 for x > 1 (since, ∂N ∂lx < 0).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Proof of Observation 5: From the observation 1 one can see that the equation f(x, lx, M) = 0 has at least one root between 0 and 1 and one root greater then 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Also one can note that f(x, lx, M) regarded as a polynomial in x has two changes of sign and hence by Descarte’s rule of sign has at most two positive roots.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Hence equation f(x, lx, M) = 0 has exactly one root between 0 and 1 and exactly one root greater than 1 which are called β and α respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' The continuity of f(x, lx, M) ensures that the remaining part of the observation is true.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Conclusion In the present work our main motivation was to provide an analytically performed rigorous base of the study of Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1] on the propaga- tion of fully non-linear ion-acoustic waves in a collision-less magneto-plasma with degenerate electrons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' The outcomes of the investigation are interesting and some explicit features can be exhibited as follows: (1) only hump and no cavity is possible;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (2) for humps, (i) the algebraic equation for the maximum density N ob- tained by them determines it uniquely (under the assumption N > 1), (ii) N decreases with lx (the direction cosine of the wave vector k along the x-axis) and (iii) N increases with the increase of the Mach number (M).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' All these results yield simply from the maximum density N which can be uniquely determined by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' (9) under the constraint N > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Another motivation of the present work is related to the astrophysical relevance of an EPI plasma, especially in the cases of AGNs [8, 9], pulsar magneto-spheres [10, 11], neutron stars and white dwarfs [12, 13].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' A su- porting and confirmirmational results of Abdelsalam et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [1] therefore will enhance to understand deeply the structural phenomena occuring in differ- ent astrophysical systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' In this connection we would like to mention the 8 very recent work of Piotrovich et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' [9] where they have hypothesized that the AGNs are wormhole mouths rather than supermassive black holes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Es- sentially due to bizzare gravitational formation wormholes may emit gamma radiation as a result of a collision of accreting flows inside it.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Now the in- teresting fact is that the radiation has a distinctive spectrum much different from those of jets or accretion discs of AGNs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Hopefully an observation of such radiation via the EPI and hence IASW would serve as evidence of the existence of wormholes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' Appendix Proof of Observation 3 Let � 3 5a �1/8 = γ so that a = 3 5γ8 9 Then at x = γ f(x,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' a,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' c) = (1 + γ + γ2)2 + 3c ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2(1 + γ + γ2 + γ3 + γ4)2 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='− 3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2(3 + 6γ + 4γ2 + 2γ3) − cγ3(2 + 4γ + 6γ2 + 3γ3 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='= ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2[(5γ2(1 + γ + γ2)2 − 3(3 + 6γ + 4γ2 + 2γ3)) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='+c(3(1 + γ + γ2 + γ3 + γ4)2 − 5γ5(2 + 4γ + 6γ2 + 3γ3))] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='= ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2[(−9 − 18γ − 7γ2 + 4γ3 + 15γ4 + 10γ5 + 5γ6) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='+c(3 + 6γ + 9γ2 + 12γ3 + 15γ4 + 2γ5 − 11γ6 − 24γ7 − 12γ8)] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='= ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2[(γ − 1)(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5)] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='−c(γ − 1)(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='= γ − 1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2 [(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='−c(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7)] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='< γ − 1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='5γ2 [(9 + 27γ + 34γ2 + 30γ3 + 15γ4 + 5γ5) ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='−3(3 + 9γ + 18γ2 + 30γ3 + 45γ4 + 47γ5 + 36γ6 + 12γ7)] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='≤ γ − 1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='25γ2 [36 + 108γ + 116γ2 + 60γ3 − 60γ4 − 116γ5 − 108γ6 − 36γ7] ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='< 0 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='if γ < 1 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='Proof of Observation 4 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content='∂f(x,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' a,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' c) ∂c = ax6(1 + x + x2 + x3 + x4)2 − x3(2 + 4x + 6x2 + 3x3) ≥ x3 5 [3x3(1 + x + x2 + x3 + x4)2 − 5(2 + 4x + 6x2 + 3x3)] (since,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' a = 3 5M2) = x3 5 [3x3(1 + 2x + 3x+4x3 + 5x4 + 4x5 + 3x6 + 2x7 + x8) − 5(2 + 4x + 6x2 + 3x3)] = x3 5 [−10 − 20x − 30x2 − 12x3 + 6x4 + 9x5 + 12x6 + 15x7 + 12x8 + 9x9 + 6x10 + 3x11) > 0 for x > 1 10 Declaration of competing interest The authors declare that they have no known competing financial inter- ests or personal relationships that could have appeared to influence the work reported in this paper acknowledgement One of the authors,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' KKG would like to thank the authority of Abacus Institute of Engineering and Management for all the facilities and encourage- ment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' We all are grateful to the anonymous referee for the useful comments which have enhanced the quality of the paper.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/C9AzT4oBgHgl3EQfGfvE/content/2301.01030v1.pdf'} +page_content=' References [1] U.' metadata={'source': 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100644 index 0000000000000000000000000000000000000000..3d591776b83efbe7d8bb49a9893f4129f6234878 --- /dev/null +++ b/FdE1T4oBgHgl3EQfXAQH/content/tmp_files/2301.03120v1.pdf.txt @@ -0,0 +1,1587 @@ +arXiv:2301.03120v1 [quant-ph] 8 Jan 2023 +On generating r-uniform subspaces with the isometric mapping method +K. V. Antipin∗ +Faculty of Physics, M. V. Lomonosov Moscow State University, +Leninskie gory, Moscow 119991, Russia +(Dated: January 10, 2023) +We propose a compositional approach to construct subspaces consisting entirely of r-uniform +states, including the ones in heterogeneous systems. The approach allows one to construct new +objects from old ones: it combines encoding isometries of pure quantum error correcting codes with +entangled multipartite states and subspaces. The presented methods can be also used to construct +new pure quantum error correcting codes from certain combinations of old ones. The approach is +illustrated with various examples including constructions of 2-, 3-, 4-, 5-uniform subspaces. The +results are then compared with analogous constructions obtained with the use of orthogonal arrays. +I. +INTRODUCTION +Multipartite entanglement is crucial for realization of +various protocols of quantum information processing [1– +4]. +One important manifestation of this phenomenon +is genuine multipartite entanglement (GME) [5–7]. +In +GME states entanglement is present in every bipartite +cut of a compound system, which makes them useful +in communication protocols such as quantum telepor- +tation and dense coding [8, 9]. +Another interesting +form is r-uniform (also known as maximal) entangle- +ment [3, 10, 11]. Each reduction of an r-uniform state +to r subsystems is maximally mixed. This property is +closely related to quantum secret sharing [12, 13] and +quantum error correcting codes (QECCs) [14, 15]. +Recently the notion of entangled subspaces has been +attracting much attention owing to its potential use in +quantum information science. It was first described in +Ref. [16], where the term “completely entangled sub- +spaces” was coined. +Later, depending on the form +of multipartite entanglement present in each state of +a subspace, several other types were introduced: gen- +uinely entangled subspaces (GESs) [17], negative par- +tial transpose (NPT) subspaces [18], r-uniform sub- +spaces (rUSs) [15]. +In the present paper we concen- +trate on construction of r-uniform subspaces, mostly +for heterogeneous systems, i. e., those having differ- +ent local dimensions. +There are a number of tools +for constructing r-uniform states in homogeneous sys- +tems: graph states [19], elements of combinatorial de- +sign such as Latin squares [20], symmetric matrices [21], +orthogonal arrays (OAs) [22] and their variations [23– +25]. +For construction of r-uniform states in heteroge- +neous systems OAs were extended to mixed orthogonal +arrays (MOAs) [26]. Recent developments of this method +can be found in Refs. [27, 28]. +The main source for +r-uniform subspaces in homogeneous systems are pure +quantum error correcting codes [3, 15]. Little is known +about construction of r-uniform subspaces in heteroge- +neous systems (the only method we could find in liter- +∗ kv.antipin@physics.msu.ru +ature was based on Proposition 12 of Ref. [28]). +De- +velopment of new methods of construction of rUSs for +this case is our main motivation for the present paper. +R-uniform subspaces in heterogeneous systems have re- +lation to QECCs over mixed alphabets [29] and quan- +tum information masking [30]. To our knowledge, for a +given system the largest possible dimension of rUSs is +unknown, so building new instances of such subspaces +could bring some insights in this question. +We use compositional tools of diagrammatic reason- +ing [31–33], which allow us to come up with new con- +structions and provide further instances of states and +subspaces with important properties. Tensor diagrams +are widely used in quantum information theory, in par- +ticular, in theory of QECCs. Recently a framework for +the construction of new stabilizer QECCs from old ones +with the use of tensor networks has been presented in +Ref. [34]. +The paper is organized as follows. In Section II nec- +essary definitions and some theoretical background are +given. The main results of the current paper are provided +in Section III. In Subsection III A we give diagrammatic +representation of basic properties of rUSs upon which, in +Subsection III B, we derive the methods of constructing +rUSs in heterogeneous systems such as glueing several +subspaces together, eliminating parties, combining pure +error correcting codes and maximally entangled states +and subspaces. In Subsection III C we compare our re- +sults with the ones obtained with the use of the mixed +orthogonal arrays method. Finally, in Section IV we con- +clude with discussing possible directions of further re- +search. +II. +PRELIMINARIES +Let us first give the definition of r-uniform states of an +n-partite finite-dimensional system with local dimensions +d1, . . . , dn. Such a system is usually associated with the +tensor product Hilbert space Cd1 ⊗. . .⊗Cdn. A state |ψ⟩ +in Cd1 ⊗ . . .⊗ Cdn is called r-uniform if all its reductions + +2 +FIG. 1. Doubling notation for the process of action of a linear +operator V on a pure state ψ +FIG. 2. Reduction of a bipartite pure state ψ to subsystem A +at least to r parties are maximally mixed, i. e., +Tr{i1, ..., ir}c[|ψ⟩⟨ψ|] = +1 +di1 · . . . · dir +Ii1, ..., ir +(1) +for +all +r-element +subsets +{i1, . . . , ir} +of +the +set +{1, . . . , n}. Here {i1, . . . , ir}c denotes the complement +of the given set in the set of all parties. +It is clear +that r-uniform state is also l-uniform for all l < r. By +the properties of the Schmidt decomposition, the nec- +essary condition for r-uniform states to exist is that +di1 ·. . .·dir ⩽ dir+1 ·. . .·din is satisfied for each bipartition +i1, . . . , ir|ir+1, . . . , in. +An r-uniform subspace — a subspace of Cd1 ⊗. . .⊗Cdn +consisting entirely of r-uniform vectors. +For homogeneous systems, i. e., those having equal +local dimensions, the existence of r-uniform subspaces +can be deduced from the existence of certain quan- +tum error correcting codes (QECCs). +Recall that a +QECC ((n, K, d))D is a special K-dimensional subspace +of +� +CD�⊗n such that for each its state any error affect- +ing not more than a certain number of subsystems can +be corrected. For a code with distance d = 2t + 1 the +number is equal to t. In addition, a code with distance d +can detect d − 1 errors. +In addition to the ((n, K, d))D notation for general +QECCs, we will use the designation [[n, k, d]]D for stabi- +lizer QECCs. While the symbols n and d from the latter +notation have the same sense as those in the former one, +the dimension of the codespace for the code [[n, k, d]]D +is equal to Dk. +A quantum error correcting code is called pure if +⟨i| E |j⟩ = 0 +(2) +for any states |i⟩ , |j⟩ from an orthonormal set spanning +the code space and for any error operator E with weight +strictly less than the distance of the code. +It is known that each pure QECC ((n, K, d))D yields a +K-dimensional (d − 1)-uniform subspace of (CD)⊗n, and +vice versa [15]. +To address the case of heterogeneous systems, in the +present paper we will use encoding isometries of the exist- +ing pure QECCs in combination with various states and +FIG. 3. Diagrammatic representation of the maximally mixed +state (up to the normalization factor). +subspaces of lower number of parties. A similar approach +dealing with isometric mapping to entangled subspaces +proved to be effective in constructing multipartite gen- +uinely entangled subspaces [35]. +Throughout the paper we use tensor diagrams, in par- +ticular, we use doubled-process theory notation adopted +from Ref. [31]. The doubling notation indicates the pas- +sage from pure state vectors to their associated density +operators, as shown on Fig. 1. +To deal also with mixed states, the discarding sym- +bol (map) is used. +Applying the discarding map to a +subsystem of a multipartite state is equivalent to tracing +out the subsystem, as shown on Fig. 2. +The adjoint of the discarding map (see Fig. 3) denotes +the identity operator, which is proportional to the max- +imally mixed state. +III. +RESULTS +A. +Basic properties and their diagrammatic +representation +We start with pointing at an important basic prop- +erty of subspaces under consideration. Let |φ⟩ and |χ⟩ +be two mutually orthogonal normalized vectors in an r- +uniform subspace W. An arbitrary (normalized) linear +combination |ψ⟩ = α |φ⟩ + β |χ⟩ is also in W, and hence +its reduction to some r-element subset S of the set of all +parties yields +TrSc[|ψ⟩⟨ψ|] = N IS += N IS + αβ∗ TrSc[|φ⟩⟨χ|] + βα∗ TrSc[|χ⟩⟨φ|], +(3) +where N = +�� +i∈S di +�−1, the normalization factor. Con- +sequently, the last two terms sum up to zero: +αβ∗ TrSc[|φ⟩⟨χ|] + βα∗ TrSc[|χ⟩⟨φ|] = 0, +∀ α, β ∈ C, +|α|2 + |β|2 = 1. +(4) +Setting first α real and β imaginary and then both of +them real, one can deduce that +TrSc[|φ⟩⟨χ|] = 0. +(5) +Now we can formulate this property as +Lemma 1. For any orthonormal set {|ψ⟩i} spanning r- +uniform subspace it follows that +TrSc[|ψi⟩⟨ψj|] ∼ δij IS +(6) +for any r-element subset S of the set of all parties. + +1TrB|)V +A)A3 +FIG. 4. Action of V together with tracing out subsystems Sc +results in a channel ΦS which discards its input and returns +the maximally mixed state. +Eq. (6) is known to hold for codewords of pure QECCs +of distance r + 1, which correspond to r-uniform sub- +spaces for homogeneous systems, but it is worth stress- +ing that it is valid for more general case of heterogeneous +systems. +Let us think of r-uniform subspaces in terms of isome- +tries and quantum channels. To each such subspace W +with dimension K one can relate an isometry V : CK → +Cd1 ⊗ . . . ⊗ Cdn, which maps an orthonormal basis {|i⟩} +of CK to some orthonormal set {|ψ⟩i} spanning W: +V |i⟩ = |ψi⟩ . +(7) +Hence, the range of the isometry V coincides with the +subspace W. As before, let us choose an r-element subset +S of the set of n parties. Applying the isometry to a state +in CK with subsequent tracing out n − r subsystems in +Sc results in action of a quantum channel on the state: +TrSc[V |φ⟩⟨φ| V †] = ΦS(|φ⟩⟨φ|), +|φ⟩ ∈ CK. +(8) +We +thus +obtain +a +family +of +quantum +channels +ΦS : L(CK) → L(Cdi1 ⊗. . .⊗Cdir ), where {i1, . . . , ir} = +S; one channel for each choice of S. Since subspace W +is r-uniform, a channel ΦS maps all states of CK to the +identity on S: +ΦS(|φ⟩⟨φ|) = +1 +di1 · . . . · dir +Ii1, ..., ir, +|φ⟩ ∈ CK. +(9) +In other words, the channels discard the input and map +everything to the maximally mixed state: +ΦS(X) = +Tr[X] +di1 · . . . · dir +IS, +X ∈ L(CK). +(10) +By setting X = |i⟩⟨j| in this expression, with the use of +Eqs. (7), (8), we recover Eq. (6). +It should be stressed that the above property of map- +ping to the maximally mixed state holds when the in- +put dimension of the isometry (and of the corresponding +channel) is not greater than the dimension of the range +of the isometry, i. e., the dimension of the r-uniform sub- +space. In fact, the input dimension can be strictly less +than that dimension, in which case the isometry takes the +input states to some subspace of the r-uniform space. +FIG. 5. +Construction of a 2-uniform state from an encod- +ing isometry V of the ((5, 3, 3))3 pure code and a maximally +entangled state |ψ⟩ in C2 ⊗ C3. +Diagrammatic representation of Eqs. (8) and (10) is +shown on Fig. 4, where the symbol ”∼” means that the +two diagrams are equal up to a scalar factor (the normal- +ization constant for the maximally mixed state). This +construction will be crucial in further considerations. +Now we can choose V to be an encoding isometry of +some pure quantum error correcting code. Let us try to +combine this isometry with some states. +Example: 2-uniform state in heterogeneous systems +Consider the ((5, 3, 3))3 pure code [36] and its encod- +ing isometry V . Application of V to one of the parties +of a bipartite pure state |ψ⟩ in C2 ⊗ C3 yields a 6-partite +pure state in C2 ⊗ +� +C3�⊗5, as shown on Fig. 5. The code +has distance 3, so the code subspace is 2-uniform. +In +addition, the code subspace has dimension equal to 3, +which matches the local dimension of the second party +of the state |ψ⟩. Therefore, the property of Fig. 4 holds +in this case with r = 2. +If the bipartite state |ψ⟩ is maximally entangled, i. e. +its reduction to the party with local dimension 2 is max- +imally mixed, then the resulting state in C2 ⊗ +� +C3�⊗5 +will be 2-uniform. This can be shown diagrammatically. +One needs to consider the two cases of producing the +two-party reduction of the state in question: a) all par- +ties are traced out except some two output subsystems +of V ; b) all parties are traced out except the first party +of |ψ⟩ (with dimension 2) and some output subsystem of +V . +FIG. 6. The state |ψ⟩ is completely traced out - the part of +the diagram on the bottom right is a scalar equal to 1. + +2 +3 +3 +J +2 +3 +2 +32 +3 +3 +3 +3 +3 +V +2 +3S +S +l1 +n +V +24 +FIG. 7. By the property on Fig. 4 and the maximal entangle- +ment of |ψ⟩ the resulting state is proportional to I2 ⊗ I3. +The case a) is presented on Fig. 6: the property on +Fig. 4 being used, the state |ψ⟩ gets completely traced +out and the resulting state is proportional to I3 ⊗ I3. +The case b) is analyzed on Fig. 7: on the first step the +property on Fig. 4 is used; the second step is due to the +fact that |ψ⟩ is maximally entangled. +It is interesting to note that C2⊗ +� +C3�⊗5 was the small- +est possible Hilbert space for which a 2-uniform state +could be constructed with the methods of Ref. [26]. +B. +Construction of r-uniform subspaces in +heterogeneous systems +The simplest method to produce an r-uniform sub- +space in heterogeneous systems is to ”glue” together two +r-uniform subspaces in homogeneous systems. By ”glue- +ing” we mean taking tensor product of the two subspaces: +this can be done by taking all possible tensor products +of the vectors spanning the two subspaces, the resulting +subspace will be spanned by such combinations. +Lemma 2. Tensor product of an r-uniform subspace and +a k-uniform subspace is an l-uniform subspace, where l = +min(r, k). +Proof. Let W1 be an r-uniform subspace with n parties +and let W2 be a k-uniform subspace with m parties. Con- +sider two isometries V1 : HA → HC1 ⊗ · · · ⊗ HCn and +V2 : HB → HD1 ⊗· · ·⊗HDm, where dim(HA) = dim(W1) +and dim(HB) = dim(W2). The first one, V1, maps the +basis states {|i⟩}A of HA to an orthonormal system of +vectors spanning W1. Similarly, V2 maps the basis states +{|j⟩}B of HB to vectors spanning W2. Tensor product +W1 ⊗ W2 is then spanned by the vectors +(V1 ⊗ V2) (|i⟩A ⊗ |j⟩B) , +(11) +as shown on Fig. 8. Now the property from Fig. 4 can +be applied when one traces out any n + m − l of the +parties C1, . . . , Cn, D1, . . . , Dm. As a result, a general +state |φ⟩ ∈ HA ⊗HB gets completely traced out, and the +l-party maximally mixed state is produced. +FIG. 8. +On the left: action of the isometry V1 ⊗ V2 on a +particular basis state |i⟩A ⊗ |j⟩B of HA ⊗ HB. On the right: +action of the isometry V1 ⊗V2 on a general state φ from HA ⊗ +HB, which is equal to a linear combination of basis states +{|i⟩A ⊗ |j⟩B}. Action of V1 ⊗ V2 on each state in HA ⊗ HB +generates W1 ⊗ W2, which is l-uniform. +R-uniform subspaces can be used for r-uniform quan- +tum information masking [30]. An operation V is said +to r-uniformly mask quantum information contained in +states {|i⟩} if it maps them to multipartite states {|ψi⟩} +whose all reductions to r parties are identical. +In the +proof of Lemma 2 an instance of masking has been pro- +vided: on the right part of Fig. 8 it is shown how each +state φ from HA ⊗HB is “masked” by the two isometries +V1 and V2 as an l-uniform state. +As an example, combining encoding isometries of +((5, 2, 3))2 and ((5, 3, 3))3 pure codes, by Lemma 2 +we obtain a 6-dimensional 2-uniform subspace of the +� +C2�⊗5 ⊗ +� +C3�⊗5 Hilbert space. +Can we reduce the number of parties? +A structure +similar to the one on Fig. 5 can be used. Let us take the +encoding isometry V of the [[6, 2, 3]]3 (stabilizer) pure +code (Ref. [37], Corollary 3.6). The range of the isome- +try is a 2-uniform subspace of the +� +C3�⊗6 Hilbert space, +which has dimension equal to 32 = 9. Consider a sub- +space of C2 ⊗ C9, which consists entirely of states max- +imally entangled with respect to the first party. Such a +subspace can be easily constructed with the use of Propo- +sition 3 of Ref. [38]. The dimension of the subspace is +equal to ⌊ 9 +2⌋ = 4 (Corollary 4 of Ref. [38]). Now let us +act with V on the second party (the one with dimension +9) of each state in the subspace. This procedure will gen- +erate a 4-dimensional subspace of the C2⊗ +� +C3�⊗6 Hilbert +space. The analysis, which is similar to that on Figs. 6 +and 7, shows that the resulting subspace is 2-uniform. +The above construction can be viewed as an illustra- +tion of subspace masking: only states that belong to a +specific subspace of C2⊗C9 are masked by V as 2-uniform +states in C2 ⊗ +� +C3�⊗6. +The next property provides an important way of gen- +erating r-uniform subspaces from those of larger number +of parties. It can be seen as the extension of Theorem 20 +of Ref. [39] to the case of heterogeneous systems. +Theorem 1. Let W be an r-uniform subspace of Hilbert +space with the set S = {d1, . . . , dn} of local dimensions. +Let r ⩾ 1 and dim(W) = K. Then, for any di ∈ S, +there exists an r − 1-uniform subspace of Hilbert space +with local dimensions S \ {di}. The dimension of this + +m +A +B2 +35 +subspace is equal to diK. +Proof. Consider an orthonormal set of vectors {|ψk⟩} +which span W. Each vector |ψk⟩ is r-uniform, and so, +in particular, its reduction to party i is proportional to +the maximally mixed operator I{i}. +Accordingly, the +Schmidt decomposition of |ψk⟩ with respect to the bi- +partition ”party i|the rest” reads +|ψk⟩ = +1 +√di +di−1 +� +j=0 +���φ(k) +j +� +P ⊗ +���χ(k) +j +� +P , +(12) +where { +���φ(k) +j +� +P } and { +���χ(k) +j +� +P }, with j = 0, . . . , di − 1 +and k fixed, are two orthonormal sets of vectors in r − 1- +partite and 1-partite Hilbert spaces with local parties +P = {1, . . . , n} \ {i} and P = {i}, respectively. In the +right part of Eq. (12) vectors with the same upper index +satisfy the orthonormality condition, for example, +� +χ(k) +m +���χ(k) +n +� +P = δmn. +(13) +Now consider an r − 1-element subset J ⊂ P and, for +some numbers k, s ∈ {1, 2, . . . , K}, take the reduction +of |ψk⟩⟨ψs| to the set J ∪ {i}: +TrP \J [|ψk⟩⟨ψs|] += 1 +di +di−1 +� +j, l=0 +TrP \J +����φ(k) +j +�� +φ(s) +l +��� +P +� +⊗ +���χ(k) +j +�� +χ(s) +l +��� +P . +(14) +By +Lemma +1, +this +reduction +is +proportional +to +δks IJ∪{i} = δks IJ ⊗ I{i}, and hence +1 +di +di−1 +� +j, l=0 +TrP \J +����φ(k) +j +�� +φ(s) +l +��� +P +� +⊗ +���χ(k) +j +�� +χ(s) +l +��� +P += δks +1 +dJ +IJ ⊗ 1 +di +I{i}, +(15) +where dJ is the product of local dimensions of the parties +in J. Multiplying both parts of this equality by +� +χ(k) +m +��� +and +���χ(s) +n +� +, with the use of condition (13), we obtain +TrP \J +����φ(k) +m +�� +φ(s) +n +��� +P +� += δksδmn +1 +dJ +IJ. +(16) +Taking trace over subsystem J in the last equation, one +can see that the set of diK vectors { +���φ(t) +j +� +P }, j = +0, . . . , di − 1, t = 1, . . . , K is an orthonormal system. +Since Eq. (16) holds for any choice of an r − 1-element +subset J ⊂ P, the states { +���φ(t) +j +� +P } are r − 1-uniform. In +addition, from the same equation one can see that any lin- +ear combination of these vectors is an r−1-uniform state. +Therefore, the system { +���φ(t) +j +� +P } spans a diK-dimensional +r − 1-uniform subspace. From Eq. (12) it follows that +diTr{i} +� K +� +s=1 +|ψs⟩⟨ψs| +� +(17) +is the orthogonal projector on the subspace in question. +A practical way to obtain an orthonormal system of +vectors spanning the subspace defined by the projector +in Eq. (17) is as follows. Let us suppose that party i +with local dimension di is being eliminated, just as in the +condition of Theorem 1. Consider an orthonormal system +of one party vectors {|vj⟩}, j = 0, . . . , di−1, which spans +Cdi and such that each partial scalar product +���µ(s) +j +� +≡ ⟨vj|ψs⟩ , +j = 0, . . . , di − 1, +s = 1, . . . , K, +(18) +is a non-null vector, where the only input of the +(co)vector ⟨vj| is joined with the i-th output of the vec- +tor |ψs⟩ in each partial scalar product. Then diK vectors +{ +���µ(s) +j +� +} span the subspace in question. Indeed, the vec- +tors are mutually orthogonal: +� +µ(t) +l +���µ(s) +j +� += ⟨ψt|vl⟩ ⟨vj|ψs⟩ += ⟨vj| TrP [|ψs⟩⟨ψt|] |vl⟩ = 1 +di +δts ⟨vj|vl⟩ += 1 +di +δtsδlj, +(19) +where the third equality follows from r-uniformity of the +original vectors {|ψs⟩} and Lemma 1. +Consequently, +{√di +���µ(s) +j +� +} is an orthonormal system, and the corre- +sponding projector +� +j, s +� +di +���µ(s) +j +�� +µ(s) +j +��� +� +di = di +� +j, s +⟨vj|ψs⟩ ⟨ψs|vj⟩ += diTr{i} +�� +s +|ψs⟩⟨ψs| +� +(20) +coincides with the one in Eq. (17). +As an example, from the obtained above 4-dimensional +2-uniform subspace of C2 ⊗ +� +C3�⊗6 Hilbert space one can +produce a 12-dimensional 1-uniform subspace of C2 ⊗ +� +C3�⊗5 Hilbert space by eliminating one of the parties +with local dimension 3. +When an initial r-uniform subspace is spanned just by +1 vector, the described above practical method becomes +similar to Proposition 12 of Ref. [28]. +As we have seen from Lemma 2, glueing two uniform +subspaces together doesn’t increase the uniformity pa- +rameter of the resulting subspace. This is in accordance + +6 +with the general principle that local operations cannot +produce any entanglement over that present in origi- +nal states. Let us show that making use of additional +resources such as maximally entangled states can lead +to larger uniformity parameters of the produced states +and subspaces in comparison with original ones. At first +we consider uniform subspaces in homogeneous systems, +i. e., those corresponding to pure quantum error correct- +ing codes. +Recall that the parameters of a ((n, K, d))D code sat- +isfy the inequality [36, 40] +K ⩽ Dn−2(d−1), +(21) +which is called the quantum Singleton bound. +If pa- +rameters of a code saturate the bound in Eq. (21), +the code is called quantum maximum distance separable +code (QMDS) [36]. It is known that all QMDS codes are +pure [36]. +In Ref. [15] an important observation about QMDS +codes was made. We reformulate it here in a more general +form and provide the proof. +Lemma 3 (An observation in the proof of Proposition +7 of Ref. [15]). Let ((n, K, d)) be a QMDS code. Con- +sider the projector P = �K +s=1 |ψs⟩⟨ψs| on the codespace, +where {|ψs⟩} is an orthonormal set of vectors that span +the codespace. Then each reduction of P to n − (d − 1) +parties is proportional to the maximally mixed operator +In−(d−1). +Proof. According to Theorem 20 of Ref. [39] (or The- +orem 1 here), tracing out one party yields a projector +on a KD-dimensional subspace of +� +CD�⊗n−1, hence af- +ter d − 1 such steps of tracing out we have a projec- +tor on a subspace of +� +CD�⊗(n−(d−1)) with dimension +KDd−1 = Dn−(d−1), i. e. +the projector on the whole +space +� +CD�⊗(n−(d−1)), the identity operator. +We stress that this holds only for QMDS codes - those +with K = Dn−2(d−1), and not for other pure codes. +With the use of QMDS codes we can now formulate +the following property. +Theorem 2. Let ((n1, K1, d1))D1 and ((n2, K2, d2))D2 +be two QMDS codes with K1 = K2 ≡ K > 1. Denote +r1 ≡ d1 − 1 and r2 ≡ d2 − 1. +Then there exists an +l-uniform state in +� +CD1�⊗n1 ⊗ +� +CD2�⊗n2 Hilbert space +with +l = min (n1 − r1, n2 − r2, r1 + r2 + 1) . +(22) +Proof. Since the two codes are pure, there are two sub- +spaces related to them: an r1-uniform subspace W1 of +� +CD1�⊗n1 and an r2-uniform subspace W2 of +� +CD2�⊗n2 +such that dim(W1) = dim(W2) = K. +Consider two isometries V1 : CK → +� +CD1�⊗n1 and +V2 : CK → +� +CD2�⊗n2 whose ranges coincide with W1 and +FIG. 9. Steps to prove l-uniformity of the state |ψ⟩S1S2. +W2, respectively. Now let us take any bipartite maxi- +mally entangled state |φ⟩AB in CK ⊗ CK and construct +the state +|ψ⟩S1S2 = (V1 ⊗ V2) |φ⟩AB , +(23) +which belongs to +� +CD1�⊗n1 ⊗ +� +CD2�⊗n2. Here S1 and S2 +denote the sets of the output parties of the isometries V1 +and V2, respectively. We claim that the state |ψ⟩S1S2 is +l-uniform, with l as in Eq. (22). +The underlying principle is shown on Fig 9. Let us as- +sume that all subsystems of |ψ⟩S1S2 are traced out except +some m1 output subsystems of isometry V1 and some m2 +output subsystems of isometry V2 , as shown on Fig 9, +a). If, for example, m2 ⩽ r2, the rule from Fig. 4 can be +applied and we arrive at the situation shown on Fig 9, b), +where isometry V2 is eliminated and the state |φ⟩AB gets +partially traced out. Next, the state |φ⟩AB is maximally +entangled, and so its reduction to A is the maximally +mixed operator +1 +K IA. As a result, isometry V1 acts on +the identity operator IA, as shown on Fig 9, c). The steps +b − c), without taking into account the trace over output +parties of V1, can be written as +V1TrB{|φ⟩⟨φ|AB}V † +1 = 1 +K V1V † +1 = 1 +K PW1, +(24) +where PW1 – the orthogonal projector on subspace W1, +the first equality follows from maximal entanglement of +|φ⟩AB, the second one – from the fact that the isometry +V1 has subspace W1 as its range. Now if m1 ⩽ n1 − r1 +then, by Lemma 3, performing the trace over n1 − m1 +output subsystems of V1 (Fig 9, c)) produces the maxi- +mally mixed state of m1 parties (Fig 9, d)) in addition to +the maximally mixed state of m2 parties obtained earlier +in the first step. We conclude that if m1 ⩽ n1 − r1 and +m2 ⩽ r2, the reduced state of m1 + m2 parties is maxi- +mally mixed. The roles of V1 and V2 can be interchanged, +and we obtain that if m1 ⩽ r1 and m2 ⩽ n2 − r2, the +reduced state is maximally mixed. +Now we need to determine the maximal number l such +that any partition of l = m1 +m2 into m1 output parties + +m2 +m1 +m2 +元.元 +元.元 +元.元 +Vi +V2 +Vi +A +B +A +B +a) +6) +m1 +m2 +m1 +m2 +V1 +A +c) +d)7 +of V1 and m2 output parties of V2 yields, after perform- +ing the trace over the rest n1 + n2 − l subsystems, the +maximally mixed state of l parties. Let us first consider +partitions in which m2 = 0. In this case the maximal +value of m1, for which the scheme on Fig. 9 can still be +applied, is n1 − r1, as it was shown above. This number +is then an upper bound on l. Interchanging the roles of +V1 and V2 and setting m1 = 0, we obtain another bound, +n2 − r2, and hence +l ⩽ min(n1 − r1, n2 − r2). +(25) +Next, let us assume that r2 > r1. Let ⌈x⌉ denote the +ceiling of x and ⌊x⌋ denote the floor of x. Consider a par- +tition of l into m1 = ⌊ l +2⌋ and m2 = ⌈ l +2⌉. If ⌈ l +2⌉ > r2 then +⌊ l +2⌋ > r1 also holds, and one cannot apply the scheme on +Fig. 9 since neither V2 nor V1 can be eliminated in the +first step a)-b) with the use of the rule from Fig. 4. Con- +sequently, we can take into account only those values of +l that satisfy ⌈ l +2⌉ ⩽ r2. Accordingly, consider a partition +of l into m2 = ⌈ l +2⌉+α and m1 = ⌊ l +2⌋−α for some integer +α > 0 such that ⌈ l +2⌉ + α = r2 + 1. In this case V2 cannot +be eliminated in the first step of scheme on Fig. 9. On +the other hand, the scheme can be initiated by apply- +ing the rule from Fig. 4 with respect to V1 on condition +that m1 = ⌊ l +2⌋ − α ⩽ r1. If the condition is satisfied, in +the step c)-d) of the scheme (with interchanged V1 and +V2) the reduction of PW2 to m2 parties will be maximally +mixed by Lemma 3, since m2 ⩽ l ⩽ n2 − r2 by Eq. (25). +This principle continues to work for greater values of α +(but bounded by the condition ⌈ l +2⌉ + α = m2 ⩽ n2 − r2), +as m1 gets smaller. It is clear that partitions with α < 0 +will also work, as the step a)-b) will be initiated with the +use of V2. To sum up, the maximal possible value of l +satisfies +� l +2 +� ++ α = r2 + 1, +� l +2 +� +− α = r1. +(26) +Adding these two equalities, we obtain +l = +� l +2 +� ++ +� l +2 +� += r1 + r2 + 1. +(27) +When r1 = r2 ≡ r, we can choose (odd) l such that +⌈ l +2⌉ = r + 1 and ⌊ l +2⌋ = r. For partitions with m1 = ⌊ l +2⌋ +and m2 = ⌈ l +2⌉ and, vice versa, m1 = ⌈ l +2⌉ and m2 = +⌊ l +2⌋, the scheme on Fig. 9 is initiated with the use of +V1 and V2, respectively. For all other partitions, which +can be parameterized with integer α as m1 = ⌈ l +2⌉ + α +and m2 = ⌊ l +2⌋ − α or vice versa, the scheme also works +by the analysis similar to that in the above paragraph. +Consequently, +l = +� l +2 +� ++ +� l +2 +� += 2r + 1, +(28) +which is just a special case of Eq. (27). +Immediate application of Theorem 2, with the use +of the correspondence between r-uniform states and 1- +dimensional pure quantum codes, produces +Corollary 2.1. Let ((n, K, d))D be a QMDS code with +K > 1. Then there exists a pure ((2n, 1, d′))D code with +distance +d′ = min(n − d + 2, 2d). +(29) +As an example, consider a ((4, 4, 2))2 code, which can +be the stabilizer [[4, 2, 2]]2 code obtained from the well- +known [[5, 1, 3]]2 code with the use of Theorem 20 of +Ref. [39]. Combining [[4, 2, 2]]2 with itself produces an +8-qubit 3-uniform state. It is known that ⌊ n +2 ⌋-uniform +states of n qubits (absolutely maximally entangled (AME) +states) don’t exist for n > 6 [3, 39, 41, 42], so the con- +structed state has maximal possible uniformity parame- +ter. +To give an example with heterogeneous systems, let +us combine pure codes ((4, 4, 2))2 and ((5, 4, 3))4. The +latter code can be produced by tensoring ((5, 2, 3))2 with +itself (Theorem 14 of Ref. [36]). By the construction in +the proof of Theorem 2, the two codes yield a 3-uniform +state in +� +C2�⊗4 ⊗ +� +C4�⊗5. We can then obtain r-uniform +subspaces by eliminating some parties of this state, but +in this case some produced subspaces will demonstrate +better values of r than those predicted by Theorem 1 +owing to the following observation. +Corollary +2.2. +Let +((n1, K1, d1))D1 +and +((n2, K2, d2))D2 +be +two +QMDS +codes +with +K1 = K2 +≡ K +> 1. +Denote r1 +≡ d1 − 1 and +r2 ≡ d2 − 1. +Then for any integers 0 ⩽ α ⩽ r1 and +0 ⩽ β ⩽ r2 there exists an l-uniform subspace W of +� +CD1�⊗n1−α ⊗ +� +CD2�⊗n2−β Hilbert space such that +dim(W) = D α +1 Dβ +2 , +l = min(n1 − r1 − α, n2 − r2 − β, +r1 + r2 + 1 − α − β). +(30) +Proof. By Theorem 2, we can construct a state in +� +CD1�⊗n1 ⊗ +� +CD2�⊗n2 Hilbert space with the uniformity +parameter given by Eq. (22). Next, we eliminate α + β +parties of this state by the procedure described after the +proof of Theorem 1. Let us take α orthonormal systems +of vectors { +���v(µ) +i +� +}, µ = 1, . . . , α, i = 0, . . . , D1−1, each +system being a basis for the corresponding CD1 Hilbert +FIG. 10. Construction of the states which span the l-uniform +subspace W of +� +CD1�⊗n1−α ⊗ +� +CD2�⊗n2−β Hilbert space. + +Vi8 +space. Similarly, we take β orthonormal systems of vec- +tors { +���w(ν) +j +� +}, ν = 1, . . . , β, j = 0, . . . , D2 − 1, each in +its own CD2 Hilbert space. Next, we pick some specific +vectors +���v(1) +i1 +� +, . . . , +���v(α) +iα +� +, one from each system, and +eliminate α output parties of the isometry V1 by joining +them with the inputs of the chosen vectors. Similarly, +we pick β specific vectors +���w(1) +j1 +� +, . . . , +���w(β) +jβ +� +and elim- +inate β output parties of the isometry V2 (see Fig. 10, +the indices of vectors v, w are omitted). As a result, we +obtain +� +v(1) +i1 +��� . . . +� +v(α) +iα +��� +� +w(1) +j1 +��� . . . +� +w(β) +jβ +��� (V1 ⊗ V2) |φ⟩AB , (31) +one of the D α +1 Dβ +2 states that span the subspace W of +� +CD1�⊗n1−α⊗ +� +CD2�⊗n2−β Hilbert space. All such states +are hence indexed by the numbers i1, . . . , iα, j1, . . . , jβ, +which represent the correspondence between tuples of +vectors v, w and the basis states of W. +The uniformity of the state in Eq. (31) can be analyzed +with the use of Fig. 10 and the same reasoning as in the +proof of Theorem 2. The vectors v and w take up α and β +positions out of n1 and n2 output parties of the isometries +V1 and V2, respectively. The parties in these positions +cannot be traced out, and this results in modifying the +bounds on l in Eq. (25): +l ⩽ min(n1 − r1 − α, n2 − r2 − β). +(32) +Eq. (26) is also modified, with r1 and r2 replaced by +r1 − α and r2 − β, respectively. As a result, we obtain +the expression for l in Eq. (30). +Earlier a 3-uniform state in +� +C2�⊗4 ⊗ +� +C4�⊗5 was +obtained with the use of Theorem 2 from pure codes +((4, 4, 2))2 and ((5, 4, 3))4. Eliminating one party with +dimension 2 and one party with dimension 4, or, in terms +of Corollary 2.2, setting α = β = 1, we produce an +8-dimensional 2-uniform subspace of +� +C2�⊗3 ⊗ +� +C4�⊗4 +Hilbert space. We stress that the original state has spe- +cial structure and, as a result, after the elimination of 2 +parties the produced subspace has higher value l = 2 in +comparison with l = 1 predicted by Theorem 1. +C. +Comparison with mixed orthogonal arrays +method and further constructions +Mixed orthogonal arrays (MOAs) [43, 44] in its specific +form, irredundant MOAs (IrMOAs) [26], have become a +powerful tool in construction of r-uniform states in het- +erogeneous systems [26–28]. In this subsection we present +several applications of the compositional approach that +allow us to reproduce or extend some results obtained +with the use of IrMOAs (in terms of the minimal num- +ber of parties for a given uniformity parameter). Such a +comparison also reveals some weaknesses of the presented +in this paper approach. +In general it becomes more difficult to find examples +of r-uniform states in heterogeneous systems when the +number of parties gets smaller. +Let us consider some +results from Ref. [27]. +Proposition 1 (Corollary 3.2 of Ref. [27].). 2- +uniform states exist for the following configura- +tions: +1. C3 ⊗ +� +C2�⊗N for N ⩾ 8. +2. +� +C3�⊗2 ⊗ +� +C2�⊗N for N ⩾ 12. +3. +� +C3�⊗3⊗ +� +C2�⊗N for N ⩾ 11 and +� +C3�⊗4⊗ +� +C2�⊗N +for N ⩾ 10. +We can reproduce the first result for N = 8. The pro- +cedure is as follows. The pure code ((5, 2, 3))2 is com- +bined with itself by the construction of Theorem 2, which +results in a 10-qubit 3-uniform state, i. e. a ((10, 1, 4))2 +pure code (Corollary 2.1). Next, by eliminating two par- +ties, by Corollary 2.2 we obtain a 4-dimensional 8-qubit +2-uniform subspace, i. e. a pure ((8, 4, 3))2 code. Now we +have an encoding isometry which maps vectors from C4 +to the 2-uniform code space (briefly, the ”8-qubit isome- +try”). Finally, we can take a maximally entangled state +in C3⊗C3 and act on one of its parties with the obtained +isometry, and the construction here will be similar to the +one presented on Fig. 5. The resulting state, which be- +longs to C3⊗ +� +C2�⊗8, is 2-uniform. For larger values of N +we can use the same auxiliary state and various combina- +tions of isometries and, if necessary, glue them together +with the use of Lemma 2. As an example, the isometry +for N = 10, which maps C4 to 10-qubit 2-uniform sub- +space, can be obtained from glueing the subspace of the +code [[5, 1, 3]]2 with itself. In other words, 10-qubit isom- +etry is obtained from glueing 5-qubit isometry with itself. +Next, by eliminating one party of a ((8, 1, 4))2 state, we +obtain an isometry which maps vectors from C2 to the +2-uniform 7-qubit space (the ”7-qubit isometry”). +By +the same procedure, from the state ((10, 1, 4))2 we ob- +tain the 9-qubit isometry. Now, the isometry for N = 12 +can be obtained from glueing 7-qubit and 5-qubit isome- +tries, for N = 13 – from 5-qubit and 8-qubit ones, and +so forth. We haven’t found any appropriate isometries to +construct the states with N = 9 and N = 11 (those that +we’ve found have input dimension 2, which is less than +the local dimension of the second party of the auxiliary +state). To conclude, we cannot reproduce the first result +of Proposition 1 only for N = 9 and N = 11 with the +current approach. +The second result from Proposition 1 is harder to re- +produce. The reason for that is as follows: we can take +a 4-qutrit 2-uniform state, which can be, for example, +the graph state of Ref. [19] or a QMDS code [[4, 0, 3]]3 +from Corollary 3.6 of Ref. [37], but now we need to act +with an isometry on its two parties, i. e., on a compound +subsystem with local dimension 3 × 3 = 9, as shown on +Fig. 11. The 8-qubit isometry that was used before is + +9 +FIG. 11. An isometry V acting on a joint subsystem of two +parties with local dimensions 3. +not appropriate here since it has input dimension equal +to 4, which is less than the output dimension of the two +combined parties. A proper isometry can be constructed +from other error correcting codes with the use of the split- +ting property for r-uniform subspaces, which is a direct +consequence of the splitting method for r-uniform states +appeared earlier in Refs. [26, 28]. +Lemma 4. Let W be an r-uniform subspace of Hilbert +space with the set S = {d1, . . . , dn} of local dimensions. +Let di = d′ +id′′ +i for some i: 1 ⩽ i ⩽ n and some integer +d′ +i, d′′ +i > 1. Then there exists an r-uniform subspace of +Hilbert space with the set of local dimensions given by +{d′ +i, d′′ +i } ∪ [S \ {di}] and having the same dimension as +the original subspace. +Proof. The subspace in question can be obtained from +the original one by splitting the i-th subsystem of each +state in W into two smaller ones, i′ and i′′, with local +dimensions d′ +i and d′′ +i , respectively. Each newly obtained +state is r-uniform, as follows from the splitting method +described in Refs. [26, 28]. +Consequently, a subspace, +which consists of such states, is r-uniform. +Now we can return to the construction of a 2-uniform +state in +� +C3�⊗2 ⊗ +� +C2�⊗12. Consider a pure ((6, 16, 3))4 +code (Corollary 3.6 of Ref. [37]). +By splitting each +ququart into 2 qubits, by Lemma 4, the code is converted +into a pure ((12, 16, 3))2 code. Since its encoding isome- +try (the ”12-qubit isometry”) has input dimension equal +to 16, we can act with it on a compound subsystem con- +sisting of two combined parties of the state [[4, 0, 3]]3 (see +Fig. 11). The resulting state is 2-uniform. The isome- +tries for larger N can be obtained from glueing the 12- +qubit isometry with the described above isometries. As +an example, a 17-qubit isometry is obtained from glue- +ing the 12-qubit and the 5-qubit ones (it doesn’t matter +that the input dimension of the 5-qubit isometry is 2 – +the input dimension of the 12-qubit isometry is 16, and +the resulting one will have the input dimension equal to +16 × 2 = 32). +N = 16 is obtained from glueing the +8-qubit isometry with itself. All other numbers N ⩾ 18 +can be otained similarly. In addition, N = 14 can be con- +structed from splitting the code [[7, 3, 3]]4 (Corollary 3.6 +of Ref. [37]). We cannot reproduce the second result of +Proposition 1 only for N = 13 and N = 15. +As for the third result of Proposition 1, 2-uniform +states in +� +C3�⊗3⊗ +� +C2�⊗N can be obtained with action of +the described above isometries on one party of the state +[[4, 0, 3]]3. As earlier, the cases N = 9 and N = 11 are +not covered by our approach, but we can construct a state +with N = 8, which extends the proposition. The result +for uniform states in +� +C3�⊗4 ⊗ +� +C2�⊗N can be substan- +tially extended. Consider a code [[4, 0, 3]]6, for example, +from Corollary 3.6 of Ref. [37]. By Lemma 4, by split- +ting each subsystem with local dimension 6 into qubit +and qutrit subsystems, we obtain a 2-uniform state in +� +C3�⊗4 ⊗ +� +C2�⊗4. The case N ⩾ 5 is trivial: we can glue +the state [[4, 0, 3]]3 with a 2-uniform state of N qubits, +which exists for N ⩾ 5 and can be obtained, for exam- +ple, from graph states constructions. These observations +extend the proposition from N = 10 to N = 4. +Gathering the above results, we can formulate +Proposition 2 (Combination of Corollary 3.2 of Ref. [27] +with the current approach). 2-uniform states exist for the +following configurations: +1. C3 ⊗ +� +C2�⊗N for N ⩾ 8. +2. +� +C3�⊗2 ⊗ +� +C2�⊗N for N ⩾ 12. +3. +� +C3�⊗3 ⊗ +� +C2�⊗N for N = 8 and N ⩾ 10 and +� +C3�⊗4 ⊗ +� +C2�⊗N for N ⩾ 4. +Let us also analyze some results of Ref. [28]. +Proposition 3 (Theorem 9 of Ref. [28]). For any d > 2, +the following holds. +1. There exists a 2-uniform state in +� +C2�⊗2 ⊗ +� +Cd�⊗N +for any N ⩾ 7 and N ̸= 4d + 2, 4d + 3. +2. There exists a 2-uniform state in C2 ⊗ +� +Cd�⊗N for +any N ⩾ 5. +We can start with the 2-uniform subspace of the code +[[5, 1, 3]]2 and act with a proper isometry on three sub- +systems, i. e. on a joint system of dimension 8, of each +vector in the code. Therefore, in addition to having a +2-uniform subspace as its range, an appropriate isometry +must have input dimension greater or equal 8. The code +family [[N, N − 4, 3]]d, 4 ⩽ N ⩽ d2 + 1, d > 2 (Corol- +lary 3.6 of Ref. [37]) provides us with proper isometries +for 6 ⩽ N ⩽ 10. In addition, the isometry with 5 out- +put parties, which corresponds to [[5, 1, 3]]d, only works +when d ⩾ 8, since in this case its input dimension is equal +to d. Isometries for all other numbers, N > 10, can be +obtained by glueing the codes with N < 10 (Lemma 2). +As a result, we lift the constraint N ̸= 4d + 2, 4d + 3 and +obtain 2-uniform subspaces instead of just states. +We can only reproduce the second result of Proposi- +tion 3. All the described above isometries, this time in- +cluding the one with N = 5, can be used to act on one +party of a maximally entangled state in C2 ⊗ C2. +Instead of a maximally entangled state in C2 ⊗ C2 we +could use maximally entangled subspaces of C2 ⊗ Cp, + +3 +3 +2 +2 +2 +A +3 +3 +3 +310 +which have dimension equal to ⌊ p +2⌋, by Corollary 4 of +Ref. [7]. Now the isometry, which corresponds to code +[[N, N − 4, 3]]d, acts on a party with local dimension p +of each state in the maximally entangled subspace. The +input dimension of the isometry, dN−4, hence must be +greater or equal p, and we have the condition +N ⩾ 4 + logd p. +(33) +Summing the results, we can formulate the extension +of Proposition 3 +Proposition 4. The following holds. +1. For 2 < d ⩽ 8 there exists a 2-uniform subspace of +� +C2�⊗2 ⊗ +� +Cd�⊗N with dimension 2 for any N ⩾ 6. +2. For d > 8 there exists a 2-uniform subspace of +� +C2�⊗2 ⊗ +� +Cd�⊗N with dimension 2 for any N ⩾ 5. +3. for d > 2 and p ⩾ 2 there exists a 2-uniform sub- +space of C2 ⊗ +� +Cd�⊗N with dimension ⌊ p +2⌋ for any +N ⩾ 4 + logd p. +The above examples show that the presented approach +is more effective in constructing r-uniform states and +subspaces with larger local dimensions, i. e., qutrits or +higher. Indeed, there are not many qubit isometries for +a given value of the uniformity parameter, and, in repro- +ducing some results of Proposition 1, we had to resort +to splitting the codes of higher dimensionality. A simi- +lar tendency was observed in Ref. [35] where genuinely +entangled subspaces were constructed with the isometric +mapping method: when local dimension goes to infinity, +the dimension of the obtained subspaces asymptotically +approaches the maximal possible value. +Finally, let us provide some constructions with higher +values of the uniformity parameter. +Consider the pure QMDS code [[10, 4, 4]]3 from The- +orem 13 of Ref. [45]. +From Corollary 2.2 with α = +β = 1, we obtain a 5-uniform 9-dimensional subspace +of +� +C3�⊗18. The corresponding isometry V has the input +dimension equal to 9. Let us take a maximally entan- +gled subspace of C2 ⊗ C9, which has dimension equal to +⌊ 9 +2⌋ = 4 (Corollary 4 of Ref. [7]). Action of V on the sec- +ond party of each state in this subspace yields a 5-uniform +4-dimensional subspace of C2 ⊗ +� +C3�⊗18. With the same +isometry V we could act instead on the joint subsystem +of three parties of each state in the code space [[5, 1, 3]]2, +and this procedure yields a 5-uniform 2-dimensional sub- +space of +� +C2�⊗2 ⊗ +� +C3�⊗18. +Consider the [[10, 0, 6]]4 code, which can be obtained +from the classical [10, 5, 6] MDS code over GF(16) of +Ref. [46] by the correspondence between stabilizer QMDS +codes and self-dual classical MDS codes (Theorem 15 of +Ref. [47], see also Proposition 15 of Ref. [15]). By elimina- +tion of one party a code ((9, 4, 5))4 is constructed (The- +orem 20 of Ref. [39]). +By splitting the latter code we +obtain a ((18, 4, 5))2 code whose encoding isometry has +the input dimension equal to 4. Applying this isometry +to one of the parties of a maximally entangled state in +C3 ⊗ C3 produces a 4-uniform state in C3 ⊗ +� +C2�⊗18. +IV. +DISCUSSION +In this paper we’ve shown how new r-uniform states +and subspaces can be constructed from combining al- +ready known quantum error correcting codes, (maxi- +mally) entangled states and subspaces. +The isometric +mapping method played the key role here: one takes an +isometry, which, as its range, has a subspace with some +useful property, and applies it to states or subspaces, +perhaps with some other interesting property. This ap- +proach allowed us to complement some results which were +obtained with the mixed orthogonal arrays method. It +would be interesting to continue this parallel with OAs. +One example in this direction could be analyzing encod- +ing isometries of the QECCs obtained with OAs, for in- +stance, the ones from Ref. [25]. This could potentially +lead to new OA and MOA constructions. +The advantage of the presented approach is its exper- +imental accessibility: whenever one can realize encoding +isometries of QECCs as well as prepare auxiliary entan- +gled states, one can construct uniform states in accor- +dance with the described above procedures. +The dis- +advantage of the approach is that it doesn’t utilize the +internal structure of the combined objects beyond their +uniformity property. Taking more structural properties +into account could result in constructing more classes of +useful states and subspaces such as, for example, AME +states, the ones we couldn’t produce with the current +approach. +This observation suggests another direction +of further research: how to combine several QECCs in +the most efficient way, with taking their specific proper- +ties into account, to obtain a new QECC with “good” +characteristics (in the sense similar to the recent “good +quantum codes” constructions [48, 49]). We stress that +the distance of the codes composed by the procedure of +Theorem 2 doesn’t scale with the number of codes be- +ing combined: the distance of the resulting code will al- +ways be upper-bounded by the minimum of the number +in Eq. 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Augusiak, Fully non- +positive-partial-transpose genuinely entangled subspaces, +arXiv, 2203.16902 (2022). + diff --git a/FdE1T4oBgHgl3EQfXAQH/content/tmp_files/load_file.txt b/FdE1T4oBgHgl3EQfXAQH/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..a697f06d29d7c67e00d4328fc4d8c3af8b3bc64c --- /dev/null +++ b/FdE1T4oBgHgl3EQfXAQH/content/tmp_files/load_file.txt @@ -0,0 +1,975 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf,len=974 +page_content='arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='03120v1 [quant-ph] 8 Jan 2023 On generating r-uniform subspaces with the isometric mapping method K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Antipin∗ Faculty of Physics, M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Lomonosov Moscow State University, Leninskie gory, Moscow 119991, Russia (Dated: January 10, 2023) We propose a compositional approach to construct subspaces consisting entirely of r-uniform states, including the ones in heterogeneous systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The approach allows one to construct new objects from old ones: it combines encoding isometries of pure quantum error correcting codes with entangled multipartite states and subspaces.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The presented methods can be also used to construct new pure quantum error correcting codes from certain combinations of old ones.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The approach is illustrated with various examples including constructions of 2-, 3-, 4-, 5-uniform subspaces.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The results are then compared with analogous constructions obtained with the use of orthogonal arrays.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' I.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' INTRODUCTION Multipartite entanglement is crucial for realization of various protocols of quantum information processing [1– 4].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' One important manifestation of this phenomenon is genuine multipartite entanglement (GME) [5–7].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In GME states entanglement is present in every bipartite cut of a compound system, which makes them useful in communication protocols such as quantum telepor- tation and dense coding [8, 9].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Another interesting form is r-uniform (also known as maximal) entangle- ment [3, 10, 11].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Each reduction of an r-uniform state to r subsystems is maximally mixed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This property is closely related to quantum secret sharing [12, 13] and quantum error correcting codes (QECCs) [14, 15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Recently the notion of entangled subspaces has been attracting much attention owing to its potential use in quantum information science.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It was first described in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [16], where the term “completely entangled sub- spaces” was coined.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Later, depending on the form of multipartite entanglement present in each state of a subspace, several other types were introduced: gen- uinely entangled subspaces (GESs) [17], negative par- tial transpose (NPT) subspaces [18], r-uniform sub- spaces (rUSs) [15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In the present paper we concen- trate on construction of r-uniform subspaces, mostly for heterogeneous systems, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', those having differ- ent local dimensions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' There are a number of tools for constructing r-uniform states in homogeneous sys- tems: graph states [19], elements of combinatorial de- sign such as Latin squares [20], symmetric matrices [21], orthogonal arrays (OAs) [22] and their variations [23– 25].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For construction of r-uniform states in heteroge- neous systems OAs were extended to mixed orthogonal arrays (MOAs) [26].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Recent developments of this method can be found in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [27, 28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The main source for r-uniform subspaces in homogeneous systems are pure quantum error correcting codes [3, 15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Little is known about construction of r-uniform subspaces in heteroge- neous systems (the only method we could find in liter- ∗ kv.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='antipin@physics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='msu.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='ru ature was based on Proposition 12 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [28]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' De- velopment of new methods of construction of rUSs for this case is our main motivation for the present paper.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' R-uniform subspaces in heterogeneous systems have re- lation to QECCs over mixed alphabets [29] and quan- tum information masking [30].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To our knowledge, for a given system the largest possible dimension of rUSs is unknown, so building new instances of such subspaces could bring some insights in this question.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We use compositional tools of diagrammatic reason- ing [31–33], which allow us to come up with new con- structions and provide further instances of states and subspaces with important properties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Tensor diagrams are widely used in quantum information theory, in par- ticular, in theory of QECCs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Recently a framework for the construction of new stabilizer QECCs from old ones with the use of tensor networks has been presented in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [34].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The paper is organized as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In Section II nec- essary definitions and some theoretical background are given.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The main results of the current paper are provided in Section III.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In Subsection III A we give diagrammatic representation of basic properties of rUSs upon which, in Subsection III B, we derive the methods of constructing rUSs in heterogeneous systems such as glueing several subspaces together, eliminating parties, combining pure error correcting codes and maximally entangled states and subspaces.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In Subsection III C we compare our re- sults with the ones obtained with the use of the mixed orthogonal arrays method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Finally, in Section IV we con- clude with discussing possible directions of further re- search.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' II.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' PRELIMINARIES Let us first give the definition of r-uniform states of an n-partite finite-dimensional system with local dimensions d1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , dn.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Such a system is usually associated with the tensor product Hilbert space Cd1 ⊗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='⊗Cdn.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A state |ψ⟩ in Cd1 ⊗ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='⊗ Cdn is called r-uniform if all its reductions 2 FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Doubling notation for the process of action of a linear operator V on a pure state ψ FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Reduction of a bipartite pure state ψ to subsystem A at least to r parties are maximally mixed, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', Tr{i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', ir}c[|ψ⟩⟨ψ|] = 1 di1 · .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' · dir Ii1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', ir (1) for all r-element subsets {i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ir} of the set {1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , n}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Here {i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ir}c denotes the complement of the given set in the set of all parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is clear that r-uniform state is also l-uniform for all l < r.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By the properties of the Schmidt decomposition, the nec- essary condition for r-uniform states to exist is that di1 ·.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='·dir ⩽ dir+1 ·.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='·din is satisfied for each bipartition i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ir|ir+1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , in.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' An r-uniform subspace — a subspace of Cd1 ⊗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='⊗Cdn consisting entirely of r-uniform vectors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For homogeneous systems, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', those having equal local dimensions, the existence of r-uniform subspaces can be deduced from the existence of certain quan- tum error correcting codes (QECCs).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Recall that a QECC ((n, K, d))D is a special K-dimensional subspace of � CD�⊗n such that for each its state any error affect- ing not more than a certain number of subsystems can be corrected.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For a code with distance d = 2t + 1 the number is equal to t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition, a code with distance d can detect d − 1 errors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition to the ((n, K, d))D notation for general QECCs, we will use the designation [[n, k, d]]D for stabi- lizer QECCs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' While the symbols n and d from the latter notation have the same sense as those in the former one, the dimension of the codespace for the code [[n, k, d]]D is equal to Dk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A quantum error correcting code is called pure if ⟨i| E |j⟩ = 0 (2) for any states |i⟩ , |j⟩ from an orthonormal set spanning the code space and for any error operator E with weight strictly less than the distance of the code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is known that each pure QECC ((n, K, d))D yields a K-dimensional (d − 1)-uniform subspace of (CD)⊗n, and vice versa [15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To address the case of heterogeneous systems, in the present paper we will use encoding isometries of the exist- ing pure QECCs in combination with various states and FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Diagrammatic representation of the maximally mixed state (up to the normalization factor).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' subspaces of lower number of parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A similar approach dealing with isometric mapping to entangled subspaces proved to be effective in constructing multipartite gen- uinely entangled subspaces [35].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Throughout the paper we use tensor diagrams, in par- ticular, we use doubled-process theory notation adopted from Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [31].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The doubling notation indicates the pas- sage from pure state vectors to their associated density operators, as shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To deal also with mixed states, the discarding sym- bol (map) is used.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Applying the discarding map to a subsystem of a multipartite state is equivalent to tracing out the subsystem, as shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The adjoint of the discarding map (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 3) denotes the identity operator, which is proportional to the max- imally mixed state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' III.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' RESULTS A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Basic properties and their diagrammatic representation We start with pointing at an important basic prop- erty of subspaces under consideration.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let |φ⟩ and |χ⟩ be two mutually orthogonal normalized vectors in an r- uniform subspace W.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' An arbitrary (normalized) linear combination |ψ⟩ = α |φ⟩ + β |χ⟩ is also in W, and hence its reduction to some r-element subset S of the set of all parties yields TrSc[|ψ⟩⟨ψ|] = N IS = N IS + αβ∗ TrSc[|φ⟩⟨χ|] + βα∗ TrSc[|χ⟩⟨φ|], (3) where N = �� i∈S di �−1, the normalization factor.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Con- sequently, the last two terms sum up to zero: αβ∗ TrSc[|φ⟩⟨χ|] + βα∗ TrSc[|χ⟩⟨φ|] = 0, ∀ α, β ∈ C, |α|2 + |β|2 = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (4) Setting first α real and β imaginary and then both of them real, one can deduce that TrSc[|φ⟩⟨χ|] = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (5) Now we can formulate this property as Lemma 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For any orthonormal set {|ψ⟩i} spanning r- uniform subspace it follows that TrSc[|ψi⟩⟨ψj|] ∼ δij IS (6) for any r-element subset S of the set of all parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 1TrB|)V A)A3 FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Action of V together with tracing out subsystems Sc results in a channel ΦS which discards its input and returns the maximally mixed state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (6) is known to hold for codewords of pure QECCs of distance r + 1, which correspond to r-uniform sub- spaces for homogeneous systems, but it is worth stress- ing that it is valid for more general case of heterogeneous systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us think of r-uniform subspaces in terms of isome- tries and quantum channels.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To each such subspace W with dimension K one can relate an isometry V : CK → Cd1 ⊗ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' ⊗ Cdn, which maps an orthonormal basis {|i⟩} of CK to some orthonormal set {|ψ⟩i} spanning W: V |i⟩ = |ψi⟩ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (7) Hence, the range of the isometry V coincides with the subspace W.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As before, let us choose an r-element subset S of the set of n parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Applying the isometry to a state in CK with subsequent tracing out n − r subsystems in Sc results in action of a quantum channel on the state: TrSc[V |φ⟩⟨φ| V †] = ΦS(|φ⟩⟨φ|), |φ⟩ ∈ CK.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (8) We thus obtain a family of quantum channels ΦS : L(CK) → L(Cdi1 ⊗.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='⊗Cdir ), where {i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ir} = S;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' one channel for each choice of S.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Since subspace W is r-uniform, a channel ΦS maps all states of CK to the identity on S: ΦS(|φ⟩⟨φ|) = 1 di1 · .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' · dir Ii1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', ir, |φ⟩ ∈ CK.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (9) In other words, the channels discard the input and map everything to the maximally mixed state: ΦS(X) = Tr[X] di1 · .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' · dir IS, X ∈ L(CK).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (10) By setting X = |i⟩⟨j| in this expression, with the use of Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (7), (8), we recover Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (6).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It should be stressed that the above property of map- ping to the maximally mixed state holds when the in- put dimension of the isometry (and of the corresponding channel) is not greater than the dimension of the range of the isometry, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', the dimension of the r-uniform sub- space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In fact, the input dimension can be strictly less than that dimension, in which case the isometry takes the input states to some subspace of the r-uniform space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Construction of a 2-uniform state from an encod- ing isometry V of the ((5, 3, 3))3 pure code and a maximally entangled state |ψ⟩ in C2 ⊗ C3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Diagrammatic representation of Eqs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (8) and (10) is shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4, where the symbol ”∼” means that the two diagrams are equal up to a scalar factor (the normal- ization constant for the maximally mixed state).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This construction will be crucial in further considerations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now we can choose V to be an encoding isometry of some pure quantum error correcting code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us try to combine this isometry with some states.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Example: 2-uniform state in heterogeneous systems Consider the ((5, 3, 3))3 pure code [36] and its encod- ing isometry V .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Application of V to one of the parties of a bipartite pure state |ψ⟩ in C2 ⊗ C3 yields a 6-partite pure state in C2 ⊗ � C3�⊗5, as shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The code has distance 3, so the code subspace is 2-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition, the code subspace has dimension equal to 3, which matches the local dimension of the second party of the state |ψ⟩.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Therefore, the property of Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 holds in this case with r = 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' If the bipartite state |ψ⟩ is maximally entangled, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' its reduction to the party with local dimension 2 is max- imally mixed, then the resulting state in C2 ⊗ � C3�⊗5 will be 2-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This can be shown diagrammatically.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' One needs to consider the two cases of producing the two-party reduction of the state in question: a) all par- ties are traced out except some two output subsystems of V ;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' b) all parties are traced out except the first party of |ψ⟩ (with dimension 2) and some output subsystem of V .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The state |ψ⟩ is completely traced out - the part of the diagram on the bottom right is a scalar equal to 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2 3 3 J 2 3 2 32 3 3 3 3 3 V 2 3S S l1 n V 24 FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 7.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By the property on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 and the maximal entangle- ment of |ψ⟩ the resulting state is proportional to I2 ⊗ I3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The case a) is presented on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 6: the property on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 being used, the state |ψ⟩ gets completely traced out and the resulting state is proportional to I3 ⊗ I3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The case b) is analyzed on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 7: on the first step the property on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 is used;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' the second step is due to the fact that |ψ⟩ is maximally entangled.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is interesting to note that C2⊗ � C3�⊗5 was the small- est possible Hilbert space for which a 2-uniform state could be constructed with the methods of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [26].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Construction of r-uniform subspaces in heterogeneous systems The simplest method to produce an r-uniform sub- space in heterogeneous systems is to ”glue” together two r-uniform subspaces in homogeneous systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By ”glue- ing” we mean taking tensor product of the two subspaces: this can be done by taking all possible tensor products of the vectors spanning the two subspaces, the resulting subspace will be spanned by such combinations.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Lemma 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Tensor product of an r-uniform subspace and a k-uniform subspace is an l-uniform subspace, where l = min(r, k).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let W1 be an r-uniform subspace with n parties and let W2 be a k-uniform subspace with m parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Con- sider two isometries V1 : HA → HC1 ⊗ · · · ⊗ HCn and V2 : HB → HD1 ⊗· · ·⊗HDm, where dim(HA) = dim(W1) and dim(HB) = dim(W2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The first one, V1, maps the basis states {|i⟩}A of HA to an orthonormal system of vectors spanning W1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Similarly, V2 maps the basis states {|j⟩}B of HB to vectors spanning W2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Tensor product W1 ⊗ W2 is then spanned by the vectors (V1 ⊗ V2) (|i⟩A ⊗ |j⟩B) , (11) as shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now the property from Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 can be applied when one traces out any n + m − l of the parties C1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , Cn, D1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , Dm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As a result, a general state |φ⟩ ∈ HA ⊗HB gets completely traced out, and the l-party maximally mixed state is produced.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' On the left: action of the isometry V1 ⊗ V2 on a particular basis state |i⟩A ⊗ |j⟩B of HA ⊗ HB.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' On the right: action of the isometry V1 ⊗V2 on a general state φ from HA ⊗ HB, which is equal to a linear combination of basis states {|i⟩A ⊗ |j⟩B}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Action of V1 ⊗ V2 on each state in HA ⊗ HB generates W1 ⊗ W2, which is l-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' R-uniform subspaces can be used for r-uniform quan- tum information masking [30].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' An operation V is said to r-uniformly mask quantum information contained in states {|i⟩} if it maps them to multipartite states {|ψi⟩} whose all reductions to r parties are identical.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In the proof of Lemma 2 an instance of masking has been pro- vided: on the right part of Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 8 it is shown how each state φ from HA ⊗HB is “masked” by the two isometries V1 and V2 as an l-uniform state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As an example, combining encoding isometries of ((5, 2, 3))2 and ((5, 3, 3))3 pure codes, by Lemma 2 we obtain a 6-dimensional 2-uniform subspace of the � C2�⊗5 ⊗ � C3�⊗5 Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Can we reduce the number of parties?' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A structure similar to the one on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 5 can be used.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us take the encoding isometry V of the [[6, 2, 3]]3 (stabilizer) pure code (Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37], Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The range of the isome- try is a 2-uniform subspace of the � C3�⊗6 Hilbert space, which has dimension equal to 32 = 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider a sub- space of C2 ⊗ C9, which consists entirely of states max- imally entangled with respect to the first party.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Such a subspace can be easily constructed with the use of Propo- sition 3 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [38].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The dimension of the subspace is equal to ⌊ 9 2⌋ = 4 (Corollary 4 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [38]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now let us act with V on the second party (the one with dimension 9) of each state in the subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This procedure will gen- erate a 4-dimensional subspace of the C2⊗ � C3�⊗6 Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The analysis, which is similar to that on Figs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 6 and 7, shows that the resulting subspace is 2-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The above construction can be viewed as an illustra- tion of subspace masking: only states that belong to a specific subspace of C2⊗C9 are masked by V as 2-uniform states in C2 ⊗ � C3�⊗6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The next property provides an important way of gen- erating r-uniform subspaces from those of larger number of parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It can be seen as the extension of Theorem 20 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [39] to the case of heterogeneous systems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let W be an r-uniform subspace of Hilbert space with the set S = {d1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , dn} of local dimensions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let r ⩾ 1 and dim(W) = K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then, for any di ∈ S, there exists an r − 1-uniform subspace of Hilbert space with local dimensions S \\ {di}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The dimension of this m A B2 35 subspace is equal to diK.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider an orthonormal set of vectors {|ψk⟩} which span W.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Each vector |ψk⟩ is r-uniform, and so, in particular, its reduction to party i is proportional to the maximally mixed operator I{i}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Accordingly, the Schmidt decomposition of |ψk⟩ with respect to the bi- partition ”party i|the rest” reads |ψk⟩ = 1 √di di−1 � j=0 ���φ(k) j � P ⊗ ���χ(k) j � P , (12) where { ���φ(k) j � P } and { ���χ(k) j � P }, with j = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , di − 1 and k fixed, are two orthonormal sets of vectors in r − 1- partite and 1-partite Hilbert spaces with local parties P = {1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , n} \\ {i} and P = {i}, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In the right part of Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (12) vectors with the same upper index satisfy the orthonormality condition, for example, � χ(k) m ���χ(k) n � P = δmn.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (13) Now consider an r − 1-element subset J ⊂ P and, for some numbers k, s ∈ {1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , K}, take the reduction of |ψk⟩⟨ψs| to the set J ∪ {i}: TrP \\J [|ψk⟩⟨ψs|] = 1 di di−1 � j, l=0 TrP \\J ����φ(k) j �� φ(s) l ��� P � ⊗ ���χ(k) j �� χ(s) l ��� P .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (14) By Lemma 1, this reduction is proportional to δks IJ∪{i} = δks IJ ⊗ I{i}, and hence 1 di di−1 � j, l=0 TrP \\J ����φ(k) j �� φ(s) l ��� P � ⊗ ���χ(k) j �� χ(s) l ��� P = δks 1 dJ IJ ⊗ 1 di I{i}, (15) where dJ is the product of local dimensions of the parties in J.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Multiplying both parts of this equality by � χ(k) m ��� and ���χ(s) n � , with the use of condition (13), we obtain TrP \\J ����φ(k) m �� φ(s) n ��� P � = δksδmn 1 dJ IJ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (16) Taking trace over subsystem J in the last equation, one can see that the set of diK vectors { ���φ(t) j � P }, j = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , di − 1, t = 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , K is an orthonormal system.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Since Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (16) holds for any choice of an r − 1-element subset J ⊂ P, the states { ���φ(t) j � P } are r − 1-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition, from the same equation one can see that any lin- ear combination of these vectors is an r−1-uniform state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Therefore, the system { ���φ(t) j � P } spans a diK-dimensional r − 1-uniform subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' From Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (12) it follows that diTr{i} � K � s=1 |ψs⟩⟨ψs| � (17) is the orthogonal projector on the subspace in question.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A practical way to obtain an orthonormal system of vectors spanning the subspace defined by the projector in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (17) is as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us suppose that party i with local dimension di is being eliminated, just as in the condition of Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider an orthonormal system of one party vectors {|vj⟩}, j = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , di−1, which spans Cdi and such that each partial scalar product ���µ(s) j � ≡ ⟨vj|ψs⟩ , j = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , di − 1, s = 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , K, (18) is a non-null vector, where the only input of the (co)vector ⟨vj| is joined with the i-th output of the vec- tor |ψs⟩ in each partial scalar product.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then diK vectors { ���µ(s) j � } span the subspace in question.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Indeed, the vec- tors are mutually orthogonal: � µ(t) l ���µ(s) j � = ⟨ψt|vl⟩ ⟨vj|ψs⟩ = ⟨vj| TrP [|ψs⟩⟨ψt|] |vl⟩ = 1 di δts ⟨vj|vl⟩ = 1 di δtsδlj, (19) where the third equality follows from r-uniformity of the original vectors {|ψs⟩} and Lemma 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consequently, {√di ���µ(s) j � } is an orthonormal system, and the corre- sponding projector � j, s � di ���µ(s) j �� µ(s) j ��� � di = di � j, s ⟨vj|ψs⟩ ⟨ψs|vj⟩ = diTr{i} �� s |ψs⟩⟨ψs| � (20) coincides with the one in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (17).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As an example, from the obtained above 4-dimensional 2-uniform subspace of C2 ⊗ � C3�⊗6 Hilbert space one can produce a 12-dimensional 1-uniform subspace of C2 ⊗ � C3�⊗5 Hilbert space by eliminating one of the parties with local dimension 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' When an initial r-uniform subspace is spanned just by 1 vector, the described above practical method becomes similar to Proposition 12 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As we have seen from Lemma 2, glueing two uniform subspaces together doesn’t increase the uniformity pa- rameter of the resulting subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This is in accordance 6 with the general principle that local operations cannot produce any entanglement over that present in origi- nal states.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us show that making use of additional resources such as maximally entangled states can lead to larger uniformity parameters of the produced states and subspaces in comparison with original ones.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' At first we consider uniform subspaces in homogeneous systems, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', those corresponding to pure quantum error correct- ing codes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Recall that the parameters of a ((n, K, d))D code sat- isfy the inequality [36, 40] K ⩽ Dn−2(d−1), (21) which is called the quantum Singleton bound.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' If pa- rameters of a code saturate the bound in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (21), the code is called quantum maximum distance separable code (QMDS) [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is known that all QMDS codes are pure [36].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [15] an important observation about QMDS codes was made.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We reformulate it here in a more general form and provide the proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Lemma 3 (An observation in the proof of Proposition 7 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [15]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let ((n, K, d)) be a QMDS code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Con- sider the projector P = �K s=1 |ψs⟩⟨ψs| on the codespace, where {|ψs⟩} is an orthonormal set of vectors that span the codespace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then each reduction of P to n − (d − 1) parties is proportional to the maximally mixed operator In−(d−1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' According to Theorem 20 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [39] (or The- orem 1 here), tracing out one party yields a projector on a KD-dimensional subspace of � CD�⊗n−1, hence af- ter d − 1 such steps of tracing out we have a projec- tor on a subspace of � CD�⊗(n−(d−1)) with dimension KDd−1 = Dn−(d−1), i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' the projector on the whole space � CD�⊗(n−(d−1)), the identity operator.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We stress that this holds only for QMDS codes - those with K = Dn−2(d−1), and not for other pure codes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' With the use of QMDS codes we can now formulate the following property.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Theorem 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let ((n1, K1, d1))D1 and ((n2, K2, d2))D2 be two QMDS codes with K1 = K2 ≡ K > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Denote r1 ≡ d1 − 1 and r2 ≡ d2 − 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then there exists an l-uniform state in � CD1�⊗n1 ⊗ � CD2�⊗n2 Hilbert space with l = min (n1 − r1, n2 − r2, r1 + r2 + 1) .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (22) Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Since the two codes are pure, there are two sub- spaces related to them: an r1-uniform subspace W1 of � CD1�⊗n1 and an r2-uniform subspace W2 of � CD2�⊗n2 such that dim(W1) = dim(W2) = K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider two isometries V1 : CK → � CD1�⊗n1 and V2 : CK → � CD2�⊗n2 whose ranges coincide with W1 and FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Steps to prove l-uniformity of the state |ψ⟩S1S2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' W2, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now let us take any bipartite maxi- mally entangled state |φ⟩AB in CK ⊗ CK and construct the state |ψ⟩S1S2 = (V1 ⊗ V2) |φ⟩AB , (23) which belongs to � CD1�⊗n1 ⊗ � CD2�⊗n2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Here S1 and S2 denote the sets of the output parties of the isometries V1 and V2, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We claim that the state |ψ⟩S1S2 is l-uniform, with l as in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (22).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The underlying principle is shown on Fig 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us as- sume that all subsystems of |ψ⟩S1S2 are traced out except some m1 output subsystems of isometry V1 and some m2 output subsystems of isometry V2 , as shown on Fig 9, a).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' If, for example, m2 ⩽ r2, the rule from Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 can be applied and we arrive at the situation shown on Fig 9, b), where isometry V2 is eliminated and the state |φ⟩AB gets partially traced out.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Next, the state |φ⟩AB is maximally entangled, and so its reduction to A is the maximally mixed operator 1 K IA.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As a result, isometry V1 acts on the identity operator IA, as shown on Fig 9, c).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The steps b − c), without taking into account the trace over output parties of V1, can be written as V1TrB{|φ⟩⟨φ|AB}V † 1 = 1 K V1V † 1 = 1 K PW1, (24) where PW1 – the orthogonal projector on subspace W1, the first equality follows from maximal entanglement of |φ⟩AB, the second one – from the fact that the isometry V1 has subspace W1 as its range.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now if m1 ⩽ n1 − r1 then, by Lemma 3, performing the trace over n1 − m1 output subsystems of V1 (Fig 9, c)) produces the maxi- mally mixed state of m1 parties (Fig 9, d)) in addition to the maximally mixed state of m2 parties obtained earlier in the first step.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We conclude that if m1 ⩽ n1 − r1 and m2 ⩽ r2, the reduced state of m1 + m2 parties is maxi- mally mixed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The roles of V1 and V2 can be interchanged, and we obtain that if m1 ⩽ r1 and m2 ⩽ n2 − r2, the reduced state is maximally mixed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now we need to determine the maximal number l such that any partition of l = m1 +m2 into m1 output parties m2 m1 m2 元.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='元 元.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='元 元.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='元 Vi V2 Vi A B A B a) 6) m1 m2 m1 m2 V1 A c) d)7 of V1 and m2 output parties of V2 yields, after perform- ing the trace over the rest n1 + n2 − l subsystems, the maximally mixed state of l parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us first consider partitions in which m2 = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In this case the maximal value of m1, for which the scheme on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 9 can still be applied, is n1 − r1, as it was shown above.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This number is then an upper bound on l.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Interchanging the roles of V1 and V2 and setting m1 = 0, we obtain another bound, n2 − r2, and hence l ⩽ min(n1 − r1, n2 − r2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (25) Next, let us assume that r2 > r1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let ⌈x⌉ denote the ceiling of x and ⌊x⌋ denote the floor of x.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider a par- tition of l into m1 = ⌊ l 2⌋ and m2 = ⌈ l 2⌉.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' If ⌈ l 2⌉ > r2 then ⌊ l 2⌋ > r1 also holds, and one cannot apply the scheme on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 9 since neither V2 nor V1 can be eliminated in the first step a)-b) with the use of the rule from Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Con- sequently, we can take into account only those values of l that satisfy ⌈ l 2⌉ ⩽ r2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Accordingly, consider a partition of l into m2 = ⌈ l 2⌉+α and m1 = ⌊ l 2⌋−α for some integer α > 0 such that ⌈ l 2⌉ + α = r2 + 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In this case V2 cannot be eliminated in the first step of scheme on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' On the other hand, the scheme can be initiated by apply- ing the rule from Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 4 with respect to V1 on condition that m1 = ⌊ l 2⌋ − α ⩽ r1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' If the condition is satisfied, in the step c)-d) of the scheme (with interchanged V1 and V2) the reduction of PW2 to m2 parties will be maximally mixed by Lemma 3, since m2 ⩽ l ⩽ n2 − r2 by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (25).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This principle continues to work for greater values of α (but bounded by the condition ⌈ l 2⌉ + α = m2 ⩽ n2 − r2), as m1 gets smaller.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is clear that partitions with α < 0 will also work, as the step a)-b) will be initiated with the use of V2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To sum up, the maximal possible value of l satisfies � l 2 � + α = r2 + 1, � l 2 � − α = r1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (26) Adding these two equalities, we obtain l = � l 2 � + � l 2 � = r1 + r2 + 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (27) When r1 = r2 ≡ r, we can choose (odd) l such that ⌈ l 2⌉ = r + 1 and ⌊ l 2⌋ = r.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For partitions with m1 = ⌊ l 2⌋ and m2 = ⌈ l 2⌉ and, vice versa, m1 = ⌈ l 2⌉ and m2 = ⌊ l 2⌋, the scheme on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 9 is initiated with the use of V1 and V2, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For all other partitions, which can be parameterized with integer α as m1 = ⌈ l 2⌉ + α and m2 = ⌊ l 2⌋ − α or vice versa, the scheme also works by the analysis similar to that in the above paragraph.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consequently, l = � l 2 � + � l 2 � = 2r + 1, (28) which is just a special case of Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (27).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Immediate application of Theorem 2, with the use of the correspondence between r-uniform states and 1- dimensional pure quantum codes, produces Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let ((n, K, d))D be a QMDS code with K > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then there exists a pure ((2n, 1, d′))D code with distance d′ = min(n − d + 2, 2d).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (29) As an example, consider a ((4, 4, 2))2 code, which can be the stabilizer [[4, 2, 2]]2 code obtained from the well- known [[5, 1, 3]]2 code with the use of Theorem 20 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [39].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Combining [[4, 2, 2]]2 with itself produces an 8-qubit 3-uniform state.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It is known that ⌊ n 2 ⌋-uniform states of n qubits (absolutely maximally entangled (AME) states) don’t exist for n > 6 [3, 39, 41, 42], so the con- structed state has maximal possible uniformity parame- ter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To give an example with heterogeneous systems, let us combine pure codes ((4, 4, 2))2 and ((5, 4, 3))4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The latter code can be produced by tensoring ((5, 2, 3))2 with itself (Theorem 14 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [36]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By the construction in the proof of Theorem 2, the two codes yield a 3-uniform state in � C2�⊗4 ⊗ � C4�⊗5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We can then obtain r-uniform subspaces by eliminating some parties of this state, but in this case some produced subspaces will demonstrate better values of r than those predicted by Theorem 1 owing to the following observation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let ((n1, K1, d1))D1 and ((n2, K2, d2))D2 be two QMDS codes with K1 = K2 ≡ K > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Denote r1 ≡ d1 − 1 and r2 ≡ d2 − 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then for any integers 0 ⩽ α ⩽ r1 and 0 ⩽ β ⩽ r2 there exists an l-uniform subspace W of � CD1�⊗n1−α ⊗ � CD2�⊗n2−β Hilbert space such that dim(W) = D α 1 Dβ 2 , l = min(n1 − r1 − α, n2 − r2 − β, r1 + r2 + 1 − α − β).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (30) Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By Theorem 2, we can construct a state in � CD1�⊗n1 ⊗ � CD2�⊗n2 Hilbert space with the uniformity parameter given by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (22).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Next, we eliminate α + β parties of this state by the procedure described after the proof of Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us take α orthonormal systems of vectors { ���v(µ) i � }, µ = 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , α, i = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , D1−1, each system being a basis for the corresponding CD1 Hilbert FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 10.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Construction of the states which span the l-uniform subspace W of � CD1�⊗n1−α ⊗ � CD2�⊗n2−β Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Vi8 space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Similarly, we take β orthonormal systems of vec- tors { ���w(ν) j � }, ν = 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , β, j = 0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , D2 − 1, each in its own CD2 Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Next, we pick some specific vectors ���v(1) i1 � , .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ���v(α) iα � , one from each system, and eliminate α output parties of the isometry V1 by joining them with the inputs of the chosen vectors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Similarly, we pick β specific vectors ���w(1) j1 � , .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , ���w(β) jβ � and elim- inate β output parties of the isometry V2 (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 10, the indices of vectors v, w are omitted).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As a result, we obtain � v(1) i1 ��� .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � v(α) iα ��� � w(1) j1 ��� .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � w(β) jβ ��� (V1 ⊗ V2) |φ⟩AB , (31) one of the D α 1 Dβ 2 states that span the subspace W of � CD1�⊗n1−α⊗ � CD2�⊗n2−β Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' All such states are hence indexed by the numbers i1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , iα, j1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , jβ, which represent the correspondence between tuples of vectors v, w and the basis states of W.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The uniformity of the state in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (31) can be analyzed with the use of Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 10 and the same reasoning as in the proof of Theorem 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The vectors v and w take up α and β positions out of n1 and n2 output parties of the isometries V1 and V2, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The parties in these positions cannot be traced out, and this results in modifying the bounds on l in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (25): l ⩽ min(n1 − r1 − α, n2 − r2 − β).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (32) Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (26) is also modified, with r1 and r2 replaced by r1 − α and r2 − β, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As a result, we obtain the expression for l in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (30).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Earlier a 3-uniform state in � C2�⊗4 ⊗ � C4�⊗5 was obtained with the use of Theorem 2 from pure codes ((4, 4, 2))2 and ((5, 4, 3))4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Eliminating one party with dimension 2 and one party with dimension 4, or, in terms of Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2, setting α = β = 1, we produce an 8-dimensional 2-uniform subspace of � C2�⊗3 ⊗ � C4�⊗4 Hilbert space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We stress that the original state has spe- cial structure and, as a result, after the elimination of 2 parties the produced subspace has higher value l = 2 in comparison with l = 1 predicted by Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Comparison with mixed orthogonal arrays method and further constructions Mixed orthogonal arrays (MOAs) [43, 44] in its specific form, irredundant MOAs (IrMOAs) [26], have become a powerful tool in construction of r-uniform states in het- erogeneous systems [26–28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In this subsection we present several applications of the compositional approach that allow us to reproduce or extend some results obtained with the use of IrMOAs (in terms of the minimal num- ber of parties for a given uniformity parameter).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Such a comparison also reveals some weaknesses of the presented in this paper approach.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In general it becomes more difficult to find examples of r-uniform states in heterogeneous systems when the number of parties gets smaller.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us consider some results from Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [27].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proposition 1 (Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [27].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=').' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2- uniform states exist for the following configura- tions: 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' C3 ⊗ � C2�⊗N for N ⩾ 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � C3�⊗2 ⊗ � C2�⊗N for N ⩾ 12.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � C3�⊗3⊗ � C2�⊗N for N ⩾ 11 and � C3�⊗4⊗ � C2�⊗N for N ⩾ 10.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We can reproduce the first result for N = 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The pro- cedure is as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The pure code ((5, 2, 3))2 is com- bined with itself by the construction of Theorem 2, which results in a 10-qubit 3-uniform state, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' a ((10, 1, 4))2 pure code (Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Next, by eliminating two par- ties, by Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2 we obtain a 4-dimensional 8-qubit 2-uniform subspace, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' a pure ((8, 4, 3))2 code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now we have an encoding isometry which maps vectors from C4 to the 2-uniform code space (briefly, the ”8-qubit isome- try”).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Finally, we can take a maximally entangled state in C3⊗C3 and act on one of its parties with the obtained isometry, and the construction here will be similar to the one presented on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The resulting state, which be- longs to C3⊗ � C2�⊗8, is 2-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For larger values of N we can use the same auxiliary state and various combina- tions of isometries and, if necessary, glue them together with the use of Lemma 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As an example, the isometry for N = 10, which maps C4 to 10-qubit 2-uniform sub- space, can be obtained from glueing the subspace of the code [[5, 1, 3]]2 with itself.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In other words, 10-qubit isom- etry is obtained from glueing 5-qubit isometry with itself.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Next, by eliminating one party of a ((8, 1, 4))2 state, we obtain an isometry which maps vectors from C2 to the 2-uniform 7-qubit space (the ”7-qubit isometry”).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By the same procedure, from the state ((10, 1, 4))2 we ob- tain the 9-qubit isometry.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now, the isometry for N = 12 can be obtained from glueing 7-qubit and 5-qubit isome- tries, for N = 13 – from 5-qubit and 8-qubit ones, and so forth.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We haven’t found any appropriate isometries to construct the states with N = 9 and N = 11 (those that we’ve found have input dimension 2, which is less than the local dimension of the second party of the auxiliary state).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' To conclude, we cannot reproduce the first result of Proposition 1 only for N = 9 and N = 11 with the current approach.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The second result from Proposition 1 is harder to re- produce.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The reason for that is as follows: we can take a 4-qutrit 2-uniform state, which can be, for example, the graph state of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [19] or a QMDS code [[4, 0, 3]]3 from Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37], but now we need to act with an isometry on its two parties, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', on a compound subsystem with local dimension 3 × 3 = 9, as shown on Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 11.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The 8-qubit isometry that was used before is 9 FIG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 11.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' An isometry V acting on a joint subsystem of two parties with local dimensions 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' not appropriate here since it has input dimension equal to 4, which is less than the output dimension of the two combined parties.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A proper isometry can be constructed from other error correcting codes with the use of the split- ting property for r-uniform subspaces, which is a direct consequence of the splitting method for r-uniform states appeared earlier in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [26, 28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let W be an r-uniform subspace of Hilbert space with the set S = {d1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' , dn} of local dimensions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let di = d′ id′′ i for some i: 1 ⩽ i ⩽ n and some integer d′ i, d′′ i > 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Then there exists an r-uniform subspace of Hilbert space with the set of local dimensions given by {d′ i, d′′ i } ∪ [S \\ {di}] and having the same dimension as the original subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The subspace in question can be obtained from the original one by splitting the i-th subsystem of each state in W into two smaller ones, i′ and i′′, with local dimensions d′ i and d′′ i , respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Each newly obtained state is r-uniform, as follows from the splitting method described in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [26, 28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consequently, a subspace, which consists of such states, is r-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now we can return to the construction of a 2-uniform state in � C3�⊗2 ⊗ � C2�⊗12.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider a pure ((6, 16, 3))4 code (Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By splitting each ququart into 2 qubits, by Lemma 4, the code is converted into a pure ((12, 16, 3))2 code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Since its encoding isome- try (the ”12-qubit isometry”) has input dimension equal to 16, we can act with it on a compound subsystem con- sisting of two combined parties of the state [[4, 0, 3]]3 (see Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 11).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The resulting state is 2-uniform.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The isome- tries for larger N can be obtained from glueing the 12- qubit isometry with the described above isometries.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As an example, a 17-qubit isometry is obtained from glue- ing the 12-qubit and the 5-qubit ones (it doesn’t matter that the input dimension of the 5-qubit isometry is 2 – the input dimension of the 12-qubit isometry is 16, and the resulting one will have the input dimension equal to 16 × 2 = 32).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' N = 16 is obtained from glueing the 8-qubit isometry with itself.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' All other numbers N ⩾ 18 can be otained similarly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition, N = 14 can be con- structed from splitting the code [[7, 3, 3]]4 (Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We cannot reproduce the second result of Proposition 1 only for N = 13 and N = 15.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As for the third result of Proposition 1, 2-uniform states in � C3�⊗3⊗ � C2�⊗N can be obtained with action of the described above isometries on one party of the state [[4, 0, 3]]3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As earlier, the cases N = 9 and N = 11 are not covered by our approach, but we can construct a state with N = 8, which extends the proposition.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The result for uniform states in � C3�⊗4 ⊗ � C2�⊗N can be substan- tially extended.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider a code [[4, 0, 3]]6, for example, from Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By Lemma 4, by split- ting each subsystem with local dimension 6 into qubit and qutrit subsystems, we obtain a 2-uniform state in � C3�⊗4 ⊗ � C2�⊗4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The case N ⩾ 5 is trivial: we can glue the state [[4, 0, 3]]3 with a 2-uniform state of N qubits, which exists for N ⩾ 5 and can be obtained, for exam- ple, from graph states constructions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' These observations extend the proposition from N = 10 to N = 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Gathering the above results, we can formulate Proposition 2 (Combination of Corollary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [27] with the current approach).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2-uniform states exist for the following configurations: 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' C3 ⊗ � C2�⊗N for N ⩾ 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � C3�⊗2 ⊗ � C2�⊗N for N ⩾ 12.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' � C3�⊗3 ⊗ � C2�⊗N for N = 8 and N ⩾ 10 and � C3�⊗4 ⊗ � C2�⊗N for N ⩾ 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us also analyze some results of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [28].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Proposition 3 (Theorem 9 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [28]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For any d > 2, the following holds.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' There exists a 2-uniform state in � C2�⊗2 ⊗ � Cd�⊗N for any N ⩾ 7 and N ̸= 4d + 2, 4d + 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' There exists a 2-uniform state in C2 ⊗ � Cd�⊗N for any N ⩾ 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We can start with the 2-uniform subspace of the code [[5, 1, 3]]2 and act with a proper isometry on three sub- systems, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' on a joint system of dimension 8, of each vector in the code.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Therefore, in addition to having a 2-uniform subspace as its range, an appropriate isometry must have input dimension greater or equal 8.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The code family [[N, N − 4, 3]]d, 4 ⩽ N ⩽ d2 + 1, d > 2 (Corol- lary 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='6 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [37]) provides us with proper isometries for 6 ⩽ N ⩽ 10.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' In addition, the isometry with 5 out- put parties, which corresponds to [[5, 1, 3]]d, only works when d ⩾ 8, since in this case its input dimension is equal to d.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Isometries for all other numbers, N > 10, can be obtained by glueing the codes with N < 10 (Lemma 2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' As a result, we lift the constraint N ̸= 4d + 2, 4d + 3 and obtain 2-uniform subspaces instead of just states.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We can only reproduce the second result of Proposi- tion 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' All the described above isometries, this time in- cluding the one with N = 5, can be used to act on one party of a maximally entangled state in C2 ⊗ C2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Instead of a maximally entangled state in C2 ⊗ C2 we could use maximally entangled subspaces of C2 ⊗ Cp, 3 3 2 2 2 A 3 3 3 310 which have dimension equal to ⌊ p 2⌋, by Corollary 4 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [7].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Now the isometry, which corresponds to code [[N, N − 4, 3]]d, acts on a party with local dimension p of each state in the maximally entangled subspace.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The input dimension of the isometry, dN−4, hence must be greater or equal p, and we have the condition N ⩾ 4 + logd p.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (33) Summing the results, we can formulate the extension of Proposition 3 Proposition 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The following holds.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For 2 < d ⩽ 8 there exists a 2-uniform subspace of � C2�⊗2 ⊗ � Cd�⊗N with dimension 2 for any N ⩾ 6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' For d > 8 there exists a 2-uniform subspace of � C2�⊗2 ⊗ � Cd�⊗N with dimension 2 for any N ⩾ 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' for d > 2 and p ⩾ 2 there exists a 2-uniform sub- space of C2 ⊗ � Cd�⊗N with dimension ⌊ p 2⌋ for any N ⩾ 4 + logd p.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The above examples show that the presented approach is more effective in constructing r-uniform states and subspaces with larger local dimensions, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=', qutrits or higher.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Indeed, there are not many qubit isometries for a given value of the uniformity parameter, and, in repro- ducing some results of Proposition 1, we had to resort to splitting the codes of higher dimensionality.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' A simi- lar tendency was observed in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [35] where genuinely entangled subspaces were constructed with the isometric mapping method: when local dimension goes to infinity, the dimension of the obtained subspaces asymptotically approaches the maximal possible value.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Finally, let us provide some constructions with higher values of the uniformity parameter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider the pure QMDS code [[10, 4, 4]]3 from The- orem 13 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [45].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' From Corollary 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content='2 with α = β = 1, we obtain a 5-uniform 9-dimensional subspace of � C3�⊗18.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The corresponding isometry V has the input dimension equal to 9.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Let us take a maximally entan- gled subspace of C2 ⊗ C9, which has dimension equal to ⌊ 9 2⌋ = 4 (Corollary 4 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [7]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Action of V on the sec- ond party of each state in this subspace yields a 5-uniform 4-dimensional subspace of C2 ⊗ � C3�⊗18.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' With the same isometry V we could act instead on the joint subsystem of three parties of each state in the code space [[5, 1, 3]]2, and this procedure yields a 5-uniform 2-dimensional sub- space of � C2�⊗2 ⊗ � C3�⊗18.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Consider the [[10, 0, 6]]4 code, which can be obtained from the classical [10, 5, 6] MDS code over GF(16) of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [46] by the correspondence between stabilizer QMDS codes and self-dual classical MDS codes (Theorem 15 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [47], see also Proposition 15 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [15]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By elimina- tion of one party a code ((9, 4, 5))4 is constructed (The- orem 20 of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [39]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' By splitting the latter code we obtain a ((18, 4, 5))2 code whose encoding isometry has the input dimension equal to 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Applying this isometry to one of the parties of a maximally entangled state in C3 ⊗ C3 produces a 4-uniform state in C3 ⊗ � C2�⊗18.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' IV.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' DISCUSSION In this paper we’ve shown how new r-uniform states and subspaces can be constructed from combining al- ready known quantum error correcting codes, (maxi- mally) entangled states and subspaces.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The isometric mapping method played the key role here: one takes an isometry, which, as its range, has a subspace with some useful property, and applies it to states or subspaces, perhaps with some other interesting property.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This ap- proach allowed us to complement some results which were obtained with the mixed orthogonal arrays method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It would be interesting to continue this parallel with OAs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' One example in this direction could be analyzing encod- ing isometries of the QECCs obtained with OAs, for in- stance, the ones from Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [25].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This could potentially lead to new OA and MOA constructions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The advantage of the presented approach is its exper- imental accessibility: whenever one can realize encoding isometries of QECCs as well as prepare auxiliary entan- gled states, one can construct uniform states in accor- dance with the described above procedures.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' The dis- advantage of the approach is that it doesn’t utilize the internal structure of the combined objects beyond their uniformity property.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Taking more structural properties into account could result in constructing more classes of useful states and subspaces such as, for example, AME states, the ones we couldn’t produce with the current approach.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This observation suggests another direction of further research: how to combine several QECCs in the most efficient way, with taking their specific proper- ties into account, to obtain a new QECC with “good” characteristics (in the sense similar to the recent “good quantum codes” constructions [48, 49]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' We stress that the distance of the codes composed by the procedure of Theorem 2 doesn’t scale with the number of codes be- ing combined: the distance of the resulting code will al- ways be upper-bounded by the minimum of the number in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' (25) taken over all the codes being combined.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' It also would be interesting to apply the isometric map- ping method to construction of multipartite subspaces with another useful property – distillability and closely related to it non-positivity of partial transpose across each bipartition (distillable and NPT subspaces).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' This direction of research could complement the results ob- tained in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' [18, 50–52].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' ACKNOWLEDGMENTS The author thanks M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Lomonosov Moscow State University for supporting this work.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' 11 [1] R.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Jozsa and N.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' Linden, Proc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/FdE1T4oBgHgl3EQfXAQH/content/2301.03120v1.pdf'} +page_content=' R.' metadata={'source': 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0000000000000000000000000000000000000000..b409528d17f15ba03756824a9b90196267555a8f --- /dev/null +++ b/GtAyT4oBgHgl3EQffPh0/content/tmp_files/2301.00336v1.pdf.txt @@ -0,0 +1,1681 @@ +From discrete to continuous: Monochromatic +3-term arithmetic progressions +Torin Greenwood∗, Jonathan Kariv†, Noah Williams‡ +December 31, 2022 +Abstract +We prove a known 2-coloring of the integers [N] := {1, 2, 3, ..., N} +minimizes the number of monochromatic arithmetic 3-progressions under +certain restrictions. A monochromatic arithmetic progression is a set of +equally-spaced integers that are all the same color. +Previous work by +Parrilo, Robertson and Saracino conjectured an optimal coloring for large +N that involves 12 colored blocks. Here, we prove that the conjecture is +optimal among anti-symmetric colorings with 12 or fewer colored blocks. +We leverage a connection to the coloring of the continuous interval [0, 1] +used by Parrilo, Robertson, and Saracino as well as by Butler, Costello +and Graham. Our proof identifies classes of colorings with permutations, +then counts the permutations using mixed integer linear programming. +1 +Introduction +Consider coloring each of the integers in [N] with one of r colors. A κ-term +arithmetic progression is any subset of κ equally-spaced integers, denoted a κ- +AP. An arithmetic progression is monochromatic if every term is colored the +same color. Can we color [N] in a way that avoids all monochromatic κ-APs? +A classic result is van der Waerden’s Theorem: +Theorem 1.1 (van der Waerden, [17]). For any integers r, κ ≥ 1, there exists +a number N such that every r-coloring of [N] has a monochromatic κ-AP. +Given that monochromatic κ-APs are guaranteed to exist when enough num- +bers are colored, we ask a refined question: what is the minimum number of +monochromatic κ-APs that could exist? To be more precise, define Cr(N) to +be the set of r-colorings of [N]. For any c ∈ Cr(N), let mκ(c) be the number of +∗Department +of +Mathematics, +North +Dakota +State +University, +Fargo, +ND +USA, +torin.greenwood@ndsu.edu +†Isazi Consulting, Johannesburg, South Africa, jkariv@isaziconsulting.co.za +‡Department of Mathematical Sciences, Appalachian State University, Boone, NC USA, +williamsnn@appstate.edu +1 +arXiv:2301.00336v1 [math.CO] 1 Jan 2023 + +monochromatic κ-APs induced by c. Finally, let APκ(N) be the total number +of κ-APs in [N], regardless of whether they are monochromatic or not. Then, +we look at +Pr,κ(N) := +min +c∈Cr(N) +mκ(c) +APκ(N). +The focus of this paper is to examine the minimum for monochromatic 3-APs +within 2-colorings, P(N) := P2,3(N). +In 1999, Ron Graham proposed that +limn→∞ P(n) = β for some constant, β, and offered a $100 prize for finding +β. +Originally, it was not clear whether colorings could perform better than +random in the long run: for large values of N, is it possible to color [N] so +the probability that a randomly selected 3-AP is monochromatic is less than +(1/2)3 + (1/2)3 = 1/4? It is notable that the analogous question for 2-colorings +of Zp is answered negatively for p prime. Indeed, Lu and Peng [12] show that for +a given 2-coloring of Zp, the fraction of 3-APs that are monochromatic depends +only on the fraction of each color present in the coloring. +For our question concerning 2-colorings of [N], Parrilo et al. [14] and Butler +et al. [2] verified independently but nearly simultaneously that it is possible +to do better than random, and they found upper and lower bounds for the +minimum monochromatic APs. The upper bound was attained through simu- +lating good colorings and finding one that performed well. They landed on the +following 12-block coloring: +Explicitly, when coloring [N], the blocks would be approximately of the following +sizes: +�28N +548 , 6N +548, 28N +548 , 37N +548 , 59N +548 , 116N +548 , 116N +548 , 59N +548 , 37N +548 , 28N +548 , 6N +548, 28N +548 +� +(1) +Due to this coloring, P(N) ≤ +117 +548 + o(1). +Note that this coloring is anti- +symmetric: the left half of the coloring is a mirror image of the right half +but uses opposite colors. In [2], Butler et al. performed many computer sim- +ulations using genetic algorithms to find the optimal coloring, and noted that +this same 12-block coloring consistently appeared regardless of the seed coloring +with which they started. They noted that a remaining challenge would be to +analyze the case of rapidly alternating colorings. +The goal of this paper is to show that as N → ∞, the 2-coloring of [N] that +has alternating color blocks with sizes given in Equation (1) is globally optimal +among anti-symmetric colorings with at most 12 blocks. As far as the authors +are aware, this is the first result of optimality under any restrictions. Here, we +let ˜C2(N) be the 2-colorings of [N] that are anti-symmetric and have at most +12 contiguous segments of red or blue. Then, define +˜P(N) = +min +c∈ ˜C2(N) +m3(c) +AP3(N). +Our main result is as follows: +2 + +Theorem 1.2. Consider coloring each integer in [N] with either red or blue +such that the coloring is anti-symmetric and has at most 12 contiguous blocks. +Then, as N increases the minimum possible fraction of arithmetic progressions +approaches 117 +548. That is, limN→∞ ˜P(N) = 117 +548. +Below, we provide a proof sketch that outlines the sections in the paper. +Sketch of proof. First, we will convert from discrete colorings of [N] to continu- +ous colorings of [0, 1] with at most 12 contiguous segments, referred to as block +colorings. After restricting the number of color changes that can occur within +a coloring, it turns out that optimizing the discrete colorings is the same as +optimizing the continuous colorings, as described rigorously in Lemma 3.6. +When switching to the continuous realm, we let a continuous coloring be a +function c : [0, 1] → {0, 1}, where 0 and 1 (in the range) represent red and blue, +respectively. Then, we let f[0,1](c) be the fraction of arithmetic progressions in +the coloring c that are monochromatic. We can represent this fraction geomet- +rically by a BCG diagram, described by Butler, Costello, and Graham in [2] and +illustrated in Figure 1 below. When c consists of 12 contiguous segments, we +label the endpoints of the coloring as (x0 = 0, x1, . . . , x12 = 1). As we allow the +coloring c to vary, f[0,1](c) is a piecewise quadratic function in the xi. Moreover, +each piece of f[0,1](c) is determined completely by the relative ordering of the +pairs of sums {xi + xj}, as described in Lemma 4.1. +Next, we aim to identify every piece of the quadratic function over all color- +ings c of [0, 1] with 12 intervals. Using the GNU Linear Programming Kit [9], +we count 371, 219 possible arrangements of {xi + xj} that could give distinct +quadratics in f[0,1], as proved in Lemma 4.2 with the help of our code available +online at https://cocalc.com/TorinGreenwood/MonochromeSequences/Mo +nochromaticProgressions. +Finally, once we have identified the 371, 219 possible pieces in the quadratic +function, we search for the global minimum of f[0,1] among all these pieces. +Fortunately, from Lemma 4.3, it turns out that f[0,1] is a continuous function +with continuous partial derivatives. Thus, we can minimize f[0,1] by search- +ing for all critical points within each piece of the quadratic. Because f[0,1] is +piecewise quadratic, its critical points are determined by systems of linear in- +equalities (defining the domain of a piece of f[0,1]) and equalities (setting the +partial derivatives of f[0,1] to zero), allowing us again to use linear programming +to identify the critical points. We describe our search for these critical points +in Lemma 4.4, completing the proof. +A byproduct of our proof structure is that among colorings with a fixed +number of contiguous blocks, there exist optimal colorings with rational end- +points, as described in Corollary 4.5. In Section 5, we show that with respect +to 2-colorings of the continuous unit circle S1, the fraction of monochromatic +APs depends only on the measure of points colored red. This is analogous to +the results in [5, 12] that concern colorings of Zp for p prime. +3 + +2 +Background +When searching for bounds on the number of monochromatic arithmetic pro- +gressions in [N], Frankl, Graham, and R¨odl developed the following theorem: +Theorem 2.1 (Frankl, Graham, R¨odl, [7]). For fixed r and κ, there exists ℓ > 0 +so that the number of monochromatic κ-APs in any r-coloring of {1, 2, . . . , N} +is at least ℓN 2 + o(N 2). +This proved that a positive fraction of APs must be monochromatic in the +long run, but gave no indication of how small ℓ could be. +Datskovsky made progress on a related problem in [5], analyzing the minimal +number of monochromatic Schur triples in [N]. A Schur triple (a, b, c) from +[N] is any triple of integers where a + b = c. +Datskovsky investigated the +minimum possible number of monochromatic Schur triples when coloring each +integer red or blue, and proved that asymptotically, the minimum is N 2/11. The +proof relied on using a discrete Fourier transform, which yielded a combinatorial +identity that broke down counts of Schur triples into a few easier to analyze +sets. Although our proof does not use the discrete Fourier transform, it also +will transform a discrete problem into a continuous space. +In [14], Parrilo et al. applied some of the tools from Datskovsky’s work +to arithmetic progressions. Again, the authors found a combinatorial identity +breaking down sets of arithmetic progressions into simpler sets, but it was no +longer possible to enumerate these sets exactly. Instead, the authors ended up +with bounds on the minimum number of monochromatic progressions possible in +[N]. They also identified the coloring shown in Equation (1) in the introduction +above, and verified it was locally optimal among colorings with 12 intervals +that are antisymmetric. Our paper aims to prove that this coloring is optimal +globally among the same set of colorings. +Constellations are a generalization of APs studied in [2], where instead of +all points being equally spaced like in an AP, the consecutive differences of +terms must satisfy some fixed proportions. Butler et al. analyzed constellations +by representing sets of monochromatic constellations using integrals of indicator +functions. This led them to represent monochromatic regions in two-dimensional +diagrams which we refer to as BCG diagrams, as illustrated in Figure 1. Visu- +alizing progressions via these diagrams is crucial to our proof, and provides the +connection we need between discrete and continuous realms. +One important aspect of our proof is enumerating the number of ways +pairwise sums {xi + xj} can be ordered for a list of positive real numbers +x0 ≤ x1 ≤ . . . ≤ xn with n even and xi + xn−i = 1. +This problem could +be framed as counting the number of chambers in a hyperplane arrangement, +and there already exists a rich set of tools for counting chambers, as seen for ex- +ample in [16]. However, in this paper, we use mixed integer linear programming, +which is well-suited to determining whether a system of linear inequalities has +a solution. This coding approach was also employed by Miller and Peterson in +[13] when they counted more sums than differences sets, and also by Laaksonen +4 + +in [10] when he counted closely-related arrangements of sums of pairs. More +details on this approach are given in Section 4.2 below. +The current best known bounds on the minimum number of monochromatic +κ-APs in the general (non-antisymmetric) case for κ > 3 are found using an +“unrolling” strategy, described in [12] and [3]. +Here, an optimal coloring of +some interval {1, . . . , ℓ} for ℓ ≪ N is found explicitly, and then repeated to fill +the interval [N]. Although this strategy works well for κ > 3, when κ = 3, the +colorings do no better than random in the long run. +3 +Relationship between discrete and continuous +case +In this section, we define a precise connection between discrete 2-colorings of +[N], and a natural continuous analogue of 2-coloring [0, 1]. First, we pause to +define a 3-AP in [N] formally: a 3-AP is any set of 3 terms (a, a+d, a+2d) each +in [N] where d is any integer including negative values or zero. It is convenient +for us to include the case where d ≤ 0 in our arguments, although this choice +ultimately does not change which colorings minimize monochromatic APs nor +the minimum they attain. +For the interval [0, 1], we identify any 3-AP (a, a + d, a + 2d) by its first and +last term (a, a + 2d) in [0, 1] × [0, 1], now allowing d to be any real number. +We obtain a measure on the set of 3-APs in [0, 1] by choosing the starting and +ending point of the progressions uniformly. A coloring of the interval is defined +to be a function c : [0, 1] → {0, 1}. +In this section, we begin by discussing measurable colorings of [0, 1], which +can be approximated in a standard way by bead colorings, defined below. Then, +we show that minimizing monochromatic APs over all measurable colorings of +[0, 1] is the same as minimizing all APs over just bead colorings, as formalized +in Lemmas 3.1, 3.2, and 3.3 below. +Next, we justify that every discrete coloring of [N] has a corresponding con- +tinuous coloring of [0, 1], and that the fraction of monochromatic APs in the +continuous coloring is a function of both the monochromatic APs and monochro- +matic off-by-1 APs in the discrete coloring, as explained above and in Lemma +3.4. Using this connection, we find that when the number of blocks of contiguous +runs of colors in a coloring is bounded by n, the fraction of APs in a continuous +coloring versus its discrete analogue is small as N grows large, formalized in +Lemma 3.5. Finally, this allows us to prove our main result of the section: that +minimizing over discrete colorings with a fixed number of blocks is the same as +minimizing over continuous colorings with the same number of blocks, stated +rigorously in Lemma 3.6. +Now, we begin stating our results formally, starting with the definition of a +Lebesgue-measurable coloring. +Definition 1. A coloring of [0, 1] is Lebesgue-measurable if c−1(0) is Lebesgue- +measurable (or equivalently c−1(1) is Lebesgue-measurable). +5 + +Definition 2. A bead coloring of [0, 1] is a coloring where for some ℓ, each +of the intervals ( i +ℓ, i+1 +ℓ ) is monochrome for i = 0, 1, . . . , ℓ − 1. Each interval +( i +ℓ, i+1 +ℓ ) is called a bead, and we sometimes refer to such a coloring as an ℓ-bead +coloring. +We introduce bead colorings because they are the continuous analogue of +coloring the integers [N] obtained by fattening each integer into an interval. +Our goal is to show that when optimizing colorings over the interval [0, 1], we +may restrict our attention to bead colorings. We call the set of bead colorings B +and the set of Lebesgue-measurable colorings M. Observe that B ⊂ M. Finally +we define a difference between two colorings as follows. +Definition 3. For two colorings ca ∈ M and cb ∈ M we define d(ca, cb) := +µ({x | ca(x) ̸= cb(x)}), where µ is the usual Lebesgue measure on R. +Recall that we identify an arithmetic progression in [0, 1] by the pair of +starting and ending points in [0, 1]. For a coloring c on [N], we define f[N](c) to +be the fraction of arithmetic progressions that are monochromatic. Analogously, +when c is a coloring of [0, 1], we have the following definition: +Definition 4. For a coloring c : [0, 1] → {0, 1}, let f[0,1](c) be the Lebesgue +measure of the set of monochromatic arithmetic 3-term progressions (viewed as +a subset of [0, 1]2) induced by the coloring c. +We justify our restriction to bead colorings with the following standard +measure-theoretic lemmas (proved for completeness momentarily): +Lemma 3.1. For any two measurable colorings c1 and c2 of [0, 1], if d(c1, c2) < +ϵ, then |f[0,1](c1) − f[0,1](c2)| < 4ϵ. +Lemma 3.2. For any measurable coloring cm of [0, 1] and any ϵ > 0 there exists +a bead coloring cb such that cm and cb disagree on a set of measure at most ϵ. +As B ⊂ M, Lemma 3.2 immediately implies the following: +Lemma 3.3. Optimizing monochromatic 3-APs over bead colorings is the same +as optimizing over all measurable colorings in the following sense: +inf +cb∈B f[0,1](cb) = +inf +cm∈M f[0,1](cm). +We begin with the proof of Lemma 3.1. +Proof of Lemma 3.1. Let A ⊂ [0, 1] be a set of measure ϵ, and consider flipping +the colors of all elements in A. There are three classes of monochromatic 3-APs +that could be created or destroyed: the APs where the first, middle or last +element is flipped (where some APs may belong to more than one class). We +consider the measure of each of these three classes. As the first and last elements +of a progression are chosen uniformly, the corresponding classes have measure +ϵ. The middle element is the average of two uniform random variables, and so +6 + +has a triangular distribution on [0, 1] with maximum density 2. Therefore the +set of monochrome progressions whose middle term is in A would have measure +at most 2ϵ. Summing the measures of these three classes yields an upper bound +for their union of 4ϵ. +We now justify Lemma 3.2, whose proof is a standard measure-theoretic +argument. +Proof of Lemma 3.2. By hypothesis, the set Xbl := c−1 +m (0) of blue-colored el- +ements of [0, 1] is measurable with finite measure. So, a standard result from +measure theory (e.g. +[15, Theorem 12]) establishes the existence of a finite +disjoint collection of open intervals I1, . . . , Iℓ ⊂ [0, 1] satisfying +µ +�� ℓ� +i=1 +Ii +� +\ Xbl +� ++ µ +� +Xbl \ +ℓ� +i=1 +Ii +� +< ϵ +2. +Since the rationals are dense in [0, 1], we can perturb the 2ℓ endpoints of the +intervals {Ii}, each by some amount less than +ϵ +4ℓ, to find a disjoint collection +I′ +1, I′ +2, . . . , I′ +ℓ of open intervals with rational endpoints. Let Ubl be the union of +these intervals. Then, Ubl and Xbl have a symmetric difference of measure at +most ϵ. It follows that the coloring cb defined by coloring each interval of Ubl +blue is a bead coloring for which d(cb, cm) < ϵ. +Call a progression an off-by-1 AP if it is of the form (a, a + d, a + 2d ± 1). +We will show that we can easily compute f[0,1](cb) for a bead coloring cb with N +beads by considering the colored beads as an integer coloring of [N], computing +the number of 3-term APs in this sequence, and adding half of the off-by-1 APs. +Recall that for a discrete coloring c, m3(c) is the number of monochromatic +3-APs induced by c. Let m′ +3(c) be the number of monochromatic off-by-1 APs. +Then, we have the following comparison between colorings of [0, 1] with exactly +N beads (of not necessarily alternating colors) and corresponding colorings of +[N]. +Lemma 3.4. Let cb be an N-bead coloring of [0, 1], and let c∗ +b be the discrete +coloring of [N] corresponding to cb, where the number i is colored blue if and +only if the ith bead in cb is colored blue. Then, +f[0,1](cb) = m3(c∗ +b) + m′ +3(c∗ +b)/2 +N 2 +. +Proof. Consider a randomly chosen progression in [0, 1] identified by its end- +points (a, b), and a fixed N-bead coloring cb. We use a probabilistic proof, so +we rewrite +(µ × µ)((a, b) ∈ [0, 1]2 : (a, b) is monochromatic) =: P((a, b) monochromatic), +where µ × µ is the usual Lebesgue measure on R2. We will condition on which +beads S and E contain a and b. Let M be the bead containing the middle +7 + +element of the progression. Given a bead coloring of [0, 1], it is useful to define +the distance between two beads A and B, db(A, B) as 0 when A = B and as one +more than the number of other beads strictly between A and B otherwise. Note +that when db(S, E) is even, then S, M, and E must form a 3-AP of beads. On the +other hand, when db(S, E) is odd, S, M, and E form an off-by-one progression +and M could be two possible beads depending on the internal positioning of a +and b within S and E. Formally, letting {Bi}N +i=1 be the set of beads, +f[0,1](cb) = +� +i,j +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) += +� +d(Bi,Bj) even +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) ++ +� +d(Bi,Bj) odd +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) +(2) +Now, P(a ∈ Bi, b ∈ Bj) = 1/N 2 for each i and j since a and b are indepen- +dently and uniformly distributed among the beads. Also, because our coloring +is fixed, when db(Bi, Bj) is even P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) is 0 or +1 depending on whether or not the beads S, M, and E form a monochromatic +3-term AP. Thus, +� +d(Bi,Bj) even +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) += m3(c∗ +b) · 1 +N 2 . +(3) +When db(Bi, Bj) is odd, there are two choices for M: B(i+j−1)/2 or B(i+j+1)/2. +Thus, we can condition on these two choices: +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) += P((a, b) mono.|a ∈ Bi, b ∈ Bj, M = B(i+j−1)/2) · P(M = B(i+j−1)/2|a ∈ Bi, b ∈ Bj) ++ P((a, b) mono.|a ∈ Bi, b ∈ Bj, M = B(i+j+1)/2) · P(M = B(i+j+1)/2|a ∈ Bi, b ∈ Bj) +Here, P(M = B(i+j−1)/2|a ∈ Bi, b ∈ Bj) = P(M = B(i+j+1)/2|a ∈ Bi, b ∈ Bj) = +1/2 because a and b are positioned uniformly within S and E. Additionally, +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj, M = B(i+j−1)/2) +is 0 or 1 depending on whether the off-by-1 progression in c∗ +b is monochromatic +or not. Hence, these two terms combined simplify to +� +d(Bi,Bj) odd +P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) += +1 +2N 2 m′ +3(c∗ +b). +(4) +8 + +Plugging in Equations (3) and (4) into Equation (2) completes the proof. +Much of the rest of this paper will deal with a particular class of colorings +called “block colorings” which we now define. Informally, they are partitions of +I into disjoint intervals which are alternately colored red and blue. +Definition 5. For a finite collection of endpoints {xi} such that 0 = x0 < +x1 < x2 < · · · < xn−1 < xn = 1, we define the associated “block” coloring as +the coloring where the n intervals Ji = (xi−1, xi) (for i ∈ {1, 2, . . . , n}) are all +monochrome and alternate in color. +Note that the colors assigned to the endpoints {xi} (or indeed to any points +within a measure zero set) do not matter. With these definitions, we can now +compare the performance of discrete colorings with their continuous analogues. +Lemma 3.5. Let C(N, n) be the set of 2-colorings of [N] with at most n contigu- +ous blocks of colors. For any coloring c ∈ C(N, n), let c∗ be the corresponding +block coloring of [0, 1] where the interval [(i − 1)/N, i/N) is colored blue by c∗ if +and only if i ∈ [N] is colored blue by c. Then, +max +c∈C(N,n) +��f[0,1](c∗) − f[N](c) +�� = O +� n +N +� +. +Here, there exists a C > 0 independent of N and n such that |O(n/N)| < Cn/N +for all positive integers n and N. +Proof. Our proof will use Lemma 3.4 to rewrite f[0,1](c∗) in terms of f[N](c). +Before proceeding with this, we will interpret the number of off-by-1 monochro- +matic APs induced by c, m′ +3(c), in terms of the regular monochromatic APs, +m3(c). We claim the following: +m′ +3(c) = 2m3(c) + O(nN). +(5) +To verify this, note that each AP (a, a + d, a + 2d) in [N] corresponds almost +bijectively to a pair of off-by-1 APs by moving the first or last endpoint inwards +by one: (a + 1, a + d, a + 2d) or (a, a + d, a + 2d − 1). (When N is odd, this +misses exactly two off-by-1 APs: (1, (N −1)/2, N) and (1, (N +1)/2, N). When +N is even, this is truly a bijection.) +Using this near bijection, we now compare when APs and off-by-1 APs are +monochromatic. Under this contraction action, the only time an AP (a, a + +d, a + 2d) is monochromatic while one of its corresponding off-by-1 APs is not +monochromatic is when a or a + 2d is adjacent to a number of the opposite +color, and the same could be said if the original AP is not monochromatic but +the off-by-1 AP is. If our coloring only has n intervals total, there are only n−1 +ways to position a immediately before a color change, and similarly only n − 1 +ways to position a + 2d immediately after a color change. Since d can still be +chosen freely, there are O(nN) possible off-by-1 APs that disagree with their +corresponding APs on being monochromatic, verifying our claim. +9 + +Now, in the notation of Lemma 3.4, we see that (c∗)∗ = c. Thus, +f[0,1](c∗) = m3(c) +N 2 ++ m′ +3(c)/2 +N 2 += 2m3(c) + O(nN) +N 2 += m3(c) +N 2/2 + O +� n +N +� +. +The proof of the lemma will be complete if we can verify the following: +m3(c) +N 2/2 = f[N](c) + O +� 1 +N +� +. +To see this, recall that by definition f[N](c) = m3(c)/ AP3(N), so that +m3(c) +N 2/2 − f[N](c) = +m3(c) +AP3(N) · AP3(N) − N 2/2 +N 2/2 +. +(6) +We have m3(c) ≤ AP3(N), so that the first fraction on the right in Equation (6) +is at most 1. Next, note that AP3(N) = N 2/2+O(N): it is easy to compute this +explicitly for when N is even or odd. But, intuitively, if we pick two numbers x +and y from [N] at random, there are N 2 ways to do this, and about half the time +x − y is even and these correspond to the start and end of a 3-AP. Therefore, +AP3(N) − N 2/2 = O(N), and plugging this into Equation (6) completes the +proof with +m3(c) +N 2/2 − f[N](c) = O +� 1 +N +� +. +Finally, we end this section with the result rigorously justifying our conver- +sion between discrete and continuous colorings. +Lemma 3.6. Let Sn be the block 2-colorings of [0, 1] with at most n blocks, and +let C(N, n) be the 2-colorings of [N] with at most n contiguous blocks, where +n = o(N) as N approaches infinity. +Then, minimizing monochromatic APs +over Sn is the same as minimizing monochromatic APs over C(N, n) in the +following sense: +lim +N→∞ +���� inf +c∈Sn f[0,1](c) − +min +c∈C(N,n) f[N](c) +���� = 0. +Here, we consider block colorings of [0, 1] where the edge of a block is at a +possibly irrational number. However, as we will see later, all optimal colorings +of [0, 1] with a fixed number of blocks must have rational endpoints. +10 + +Proof. This is mostly a standard ϵ argument, so let ϵ > 0 be given. We aim to +show for all N sufficiently large, +���� inf +c∈Sn f[0,1](c) − +min +c∈C(N,n) f[N](c) +���� ≤ ϵ. +We prove this in two halves, first proving the infimum is nearly bounded above +by the minimum, and then arguing the reverse. Consider any coloring ˜c ∈ Sn. +Then, by Lemma 3.1, for every N sufficiently large, we can find a n-block +coloring ˜cN of [0, 1] with endpoints of the form r/N for r an integer such that +��f[0,1](˜c) − f[0,1](˜cN) +�� < ϵ/4. +(7) +This is true because we can round each endpoint to the nearest 1/N. Then, +we define ˜c∗ +N to be the coloring of [N] where i is colored blue if and only if the +ith block of ˜cN is blue. Note that ˜c∗ +N still only has at most n blocks, and that +using the notation from Lemma 3.5, (˜c∗ +N)∗ = ˜cN. So, from Lemma 3.5, for N +sufficiently large (independent of the colorings ˜c, ˜cN, ˜c∗ +N), +|f[0,1](˜cN) − f[N](˜c∗ +N)| = O(n/N). +(8) +By choosing N sufficiently large (independent of the colorings ˜c, ˜cN, ˜c∗ +N), Equa- +tions (7) and (8) imply +min +c∈C(N,n) f[N](c) ≤ f[N](˜c∗ +N) < f[0,1](˜c) + ϵ +where this bound holds for all N sufficiently large and for all ˜c ∈ Sn. Therefore, +for all N sufficiently large, +min +c∈C(N,n) f[N](c) ≤ inf +c∈Sn f[0,1](c) + ϵ. +Now, we prove the reverse inequality: consider any coloring ˆc of [N], and +let ˆc∗ be the coloring of [0, 1] induced by ˆc. Again, from Lemma 3.5, for N +sufficiently large, +��f[N](ˆc) − f[0,1](ˆc∗) +�� < ϵ, +and since this is true for any coloring ˆc ∈ C(N, n), this proves that for N +sufficiently large, +inf +c∈Sn f[0,1](c) ≤ +min +c∈C(N,n) f[N](c) + ϵ. +Combining this with the complementary inequality above completes the proof. +At this point, we have justified that once bounding the number of blocks +in our coloring, optimizing colorings of [N] is the same as optimizing colorings +of [0, 1]. We only make use of this result when the number of blocks n = 12 +because that is the conjectured global optimal number of blocks. But, the same +proof shows that switching to the continuous realm works whenever n = o(N) +as N → ∞. +11 + +first term in progression +third term in progression +0 +0.2 +0.4 +0.6 +0.8 +1 +0 +0.2 +0.4 +0.6 +0.8 +1 +coloring +of [0, 1] +Figure 1: Below the horizontal axis a coloring, c, is depicted. The horizontal +axis represents the first term a in an arithmetic progression, and the vertical +axis represents the third term a+2d in the progression. Whenever a point in the +diagram is colored red (blue), this corresponds to the progression (a, a+d, a+2d) +being colored red (blue) by c. +4 +Proofs for the continuous case +4.1 +Colorings can be represented by BCG diagrams +Consider any block coloring c : [0, 1] → {0, 1} of the interval with endpoints +of the blocks given by {x0, x1, . . . , xn} with x0 = 0 and xn = 1. Without loss +of generality, assume that the first block (x0, x1) is colored blue, and alternate +colors for each remaining interval. Recall that the colors of the endpoints of the +blocks can be assigned in any way, since this does not change the probability of +selecting a monochromatic progression. +In [2], Butler, Costello, and Graham proposed a method of visualizing the +monochromatic arithmetic progressions associated to a coloring in terms of di- +agrams like in Figure 1. Any arithmetic progression (a, a + d, a + 2d) can be +identified uniquely by its first and last coordinates, which are represented by +the horizontal and vertical axes of such a diagram. Note that the diagram is +divided into vertical strips, horizontal strips, and northwest/southeast diagonal +strips. Consider any region identified as the intersection of one horizontal, one +vertical, and one diagonal strip. For a block coloring, this region corresponds +12 + +0.8 +0.6 +0.4 +0.2 +0 +0 +0.2 +0.4 +0.6 +0.8 +xto a collection of monochromatic arithmetic progressions if and only if the in- +dices of the vertical, horizontal, and diagonal strips defining the region all have +matching parities. +Because the total area of the square in any diagram like Figure 1 is one, the +measure of the set of monochromatic sequences is equal to the sum of the areas +of the red and blue regions. In Theorem 2.1 of [2], Butler et al. express the +total colored area as the sum of two integrals involving an indicator function. +Their work applied to constellations, a generalization of arithmetic progressions. +Here, we instead derive explicit polynomial equations for the areas. Consider +any one colored region in such a diagram. As the endpoints xi are perturbed +slightly, the region remains the same type of polygon although its dimensions +may change. +This implies that the area of each region can be represented +locally as a quadratic in the variables {xi}. Denote a block coloring c by its list +of endpoints x := (x0, . . . , xn). Then, summing over all monochromatic regions +shows that the measure of the monochromatic progressions, f[0,1](x), is locally +quadratic in the {xi}, too. We now denote f(x) := f[0,1](x). When we restrict +f to act on colorings with exactly n blocks, we will write f(xn). +As x varies, the regions in the diagram change polygon type. Thus, for each +n, f(xn) is a piecewise function that is locally quadratic. In order to minimize +f globally, we wish to identify the boundaries of these pieces in terms of x. The +following lemma describes how to identify the polygons in such a diagram. +Lemma 4.1. The region that is the intersection of the ith vertical strip, jth +horizontal strip, and kth diagonal strip of a diagram is empty or forms a closed +polygon. The type of polygon is determined by testing whether each of the four +values {xi + xj, xi + xj+1, xi+1 + xj, xi+1 + xj+1} is greater than or less than +the two values {2xk, 2xk+1}. +If this ordering is known, the area of the cor- +responding region can be expressed as a quadratic polynomial in the variables +{xi, xi+1, xj, xj+1, xk, xk+1}. +Proof. In the diagrams like in Figure 1, the horizontal lines all are given by +{y = xi}n +i=0 and the vertical lines by {x = xi}n +i=0. +At any point (x, y) in +the diagram, the middle value in the corresponding arithmetic progression is +(x+y)/2, and setting this equal to any endpoint in our coloring implies that the +diagonal lines are given by {y = 2xi − x}n +i=0. As described above, for any triple +(i, j, k) where i, j, k ∈ {0, . . . , 12} all have matching parities, the intersection of +the ith vertical strip, jth horizontal strip, and kth diagonal strip corresponds +to a region of monochromatic arithmetic progressions. +To determine the shape of the region of the monochromatic progressions, +first consider the rectangle formed by the intersection of the ith vertical strip +and jth horizontal strip. The corners of this rectangle have coordinates (xi, xj), +(xi+1, xj), (xi, xj+1), and (xi+1, xj+1), as labelled in Figure 2. In order for the +intersection of this rectangle with the kth diagonal strip to be non-empty, we +need the upper diagonal line y = 2xk+1 − x to be above the lower left corner of +the rectangle, (xi, xj), and the lower diagonal line y = 2xk − x to be below the +upper right corner of the rectangle, (xi+1, xj+1). This is the same as requiring +the inequalities 2xk+1 ≥ xi + xj and 2xk ≤ xi+1 + xj+1. +13 + +ith vertical strip +jth +horizontal +strip +kth diagonal strip +(x , x ) +i+1 +j+1 +(x , x ) +i+1 +j +(x , x ) +i +j +(x , x ) +i +j+1 +y = 2x - x +k +y = 2x - x +k+1 +Figure 2: Above is the intersection of the ith vertical strip, jth horizontal +strip, and kth diagonal strip determined by a block coloring with endpoints +x = (x0, x1, . . . , xn). Whether the intersection is empty can be determined by +comparing the diagonal lines {y = 2xk − x, y = 2xk+1 − x} to the corners of +the box {(xi, xj), (xi+1, xj+1)}. +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi+1 + xj ≤ 2xk ≤ xi + xj+1 ≤ xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(xi+1 − xi)(xj+1 + xi/2 + xi+1/2 − 2xk) +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj, +max(xi + xj+1, xi+1 + xj) ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(xi+1 − xi)(xj+1 − xj) − (2xk+1 − xj+1 − xi+1)2/2 +Figure 3: Illustrated here are two different ways that the kth diagonal strip +can intersect with the ith horizontal and jth vertical strip in a coloring. The +resulting monochromatic region is shaded in gray, and the area of the region is +given as a quadratic in x below the diagram. The type of polygon is determined +by the partial permutation given below each diagram. The other 18 possibilities +are enumerated in Appendix A. +14 + +Additionally, the type of polygon formed by the intersection of the strips is +determined by whether the two diagonal lines y = 2xk − x and y = 2xk+1 − x +are above or below each of the four corners of the box. For any specific relation- +ship between the lines and the four corners, some basic geometric arguments +allow us to find the area of the polygon enclosed by the strips in terms of +{xi, xi+1, xj, xj+1, xk, xk+1}. It turns out that there are 20 possible arrange- +ments of the lines that yield distinct polygons. In Figure 3, two possibilities are +given, along with the corresponding quadratic equations for their areas. The +full list of 20 polygons is given in Appendix A. +4.2 +Enumerating BCG diagrams +Now that we have identified criteria that allow us to determine the shape of each +monochromatic region in a diagram, we wish to compute how many collections +of shapes are possible between all diagrams. +In other words, we now know +that for each fixed n the function f(xn) is a piecewise quadratic function in +the endpoints xn, but we would like to identify how many pieces it has. From +Lemma 4.1, we have that the ordering of the pairwise sums {xi + xj}0≤i 0 is found, the set of inequalities is feasible. +Generally, linear programming implementations work with floating point +arithmetic, leading to rounding errors. Because there is no way to bound how +small a feasible region could be, we used the version of GLPK that works using +rational arithmetic. +Even still, GLPK returns its solutions as floating point +numbers, occasionally with roundoff errors. Thus, we set the threshold for ϵ to +be near the limits of floating point arithmetic at 5 × 10−15. We found that the +smallest ϵ value above this threshold was on the order of 10−3, illustrating that +any value below 5 × 10−15 was due to precision error. +Unfortunately, rational solvers tend to be much slower than their floating +18 + +point counterparts. To address this, we needed to optimize our code. One factor +that impacted runtime significantly was the order in which pairs (i, j) were +checked in the for loop in Line 9 of the pseudocode above. After experimenting +with different orderings, we found that checking the pairs in decreasing order of +j − i was several times faster than checking the pairs in lexicographic order. +Additionally, the rational solver became stuck in an infinite loop for 26 of +the millions of feasibility checks it ran on systems of inequalities for the n = 12 +case. This issue was resolved by changing the order of the inequalities within +these problematic systems of inequalities before they were input into GLPK. We +did not find a single ordering that avoided infinite loops for all of the feasibility +checks. Instead, we found that for any specific set of inequalities, there always +existed some ordering where GLPK would halt rapidly. +4.3 +Optimizing over all BCG diagrams +Now that we have found the number of possible BCG diagrams for f(xn) for +each n ≤ 12 and xn that are antisymmetric, we can finally leverage the power +of calculus. +Despite being a piecewise function, we soon find that f(xn) is +continuous with continuous partial derivatives. +This implies that its global +maximum happens either at a critical point, or at a boundary point of the +domain of the function. In Lemma 4.3, we prove that f(xn) has continuous +partial derivatives for any fixed n, after which we can finish the proof of Theorem +1.2. +Lemma 4.3. Consider all block colorings with n blocks and endpoints x = +(x0, x1, . . . , xn). +In the region 0 = x0 < x1 < . . . < xn = 1, f(xn) is a +continuous function with continuous partial derivatives in each variable xj. +Proof. From the diagram representation in Figure 1, it is clear that f is a +continuous function of the endpoints, xn. To verify that the partial derivatives +are continuous, we give a geometric argument: consider a single region R in the +diagram, like those drawn in Figure 3. Let fR(xn) be the area of this single +region as a function of the endpoints. The region has up to 6 sides, and each +side is a line whose position is determined by some single endpoint xi. Thus, +∂ +∂xi fR(xn) is equal to the total length of the boundaries of R determined by the +variable xi. (Indeed, moving a single xi by a small ∆xi changes the area of the +polygon R by ∆xi · ℓi + O(∆xi)2 as ∆xi → 0, where ℓi is the total length of the +boundaries of R determined by xi.) +Now, we consider several cases. As xn varies, R may do any of the following: +stay the same type of polygon, change polygon types, or enter or leave the +diagram altogether. It is clear that when R stays the same type of polygon, its +side lengths change continuously in xn, so fR(xn) has continuous partials in this +case. When R changes polygon type, the change must occur when a diagonal +line crosses over a corner of the box formed by the horizontal and vertical strips +shown in Figure 3. This means that any time a region changes polygon type, the +side that enters or leaves the region does so with initial length 0, again implying +that the partials are continuous. Finally, we consider when R enters or leaves +19 + +the diagram. There are two ways this can happen: either a horizontal, vertical, +or diagonal strip collapses to width 0, or a diagonal line crosses over the corner +of the box described above. When a strip collapses to width 0, this means that +there are two consecutive endpoints xi and xi+1 where (xi+1 −xi) tends to zero. +Thus, although the partial derivative is not continuous in this case, it is on the +boundary of the region of xn values we consider. On the other hand, when a +diagonal line crosses over the corner of a box, all the side lengths of the polygon +approach zero, so the partials are again continuous. +The diagram representation of f(xn) makes it clear that f(xn) has a bounded +number of regions: at most one for each intersection of a horizontal, vertical, and +diagonal strip. Since fR(xn) is continuous with continuous partial derivatives +for every region R, f(xn) is too. +Now that we have shown that f(xn) is continuous with continuous partial +derivatives for a fixed n, we are ready to complete the proof of Theorem 1.2 +with the following lemma. +Lemma 4.4. Let x12 = (x0, . . . , x12) with 0 ≤ x0 ≤ · · · ≤ x12 = 1 and x12 +antisymmetric. The global minimum of f(x12) over all such x12 is 117/548, +occurring uniquely at the coloring from Equation 1. +Proof. Because f(x12) is a C1 function on the polytope 0 = x0 < x1 < . . . < +x12 = 1, its global minimum occurs on the boundary of the polytope or at a +critical point within the interior of the polytope. The boundary of this polytope +is the union of polytopes of the same form with fewer variables. For this reason, +we find the critical points for f(xn) for each even value of n between 0 and 12. +Lemma 4.1 implies that f(xn) is a piecewise-quadratic function for each +n. Fix n, and consider any piece of this function, which can be extended to a +function f ∗(xn) on all of Rn/2−1 (since x1 through xn/2−1 determine the coloring +because it is anti-symmetric). The partial derivatives of f ∗(xn) are piecewise +linear functions. The critical points of this everywhere-defined quadratic are the +solution to a linear system of equations. Therefore, there are either no critical +points, or a vector space of critical points. In the case that the vector space +has positive dimension, the value of f ∗(xn) must be constant among all of its +critical points. Thus, when f ∗(xn) has critical points, it suffices to check the +value of f ∗(xn) at a single critical point when checking for the values of local +optima. +This leads us to the following pseudocode to search for the global minimum +of f(x12) on the polytope 0 = x0 ≤ x1 ≤ · · · ≤ x12 = 1. (The full version of the +code is posted at https://cocalc.com/TorinGreenwood/MonochromeSequen +ces/MonochromaticProgressions.) +Pseudocode to find the minimum value of f(x12) +18 +\\ We search the interior of f(xn) for n = 2, 4, 6, 8, 10, and 12. +19 +>> for n from 0 to 12 by twos: +20 +20 + +21 +>> for each piece f ∗(xn) of the piecewise function f(xn) +22 +(identified by Lemma 4.2): +23 +24 +>> calculate the quadratic polynomial corresponding to +25 +f ∗(xn) (by using Lemma 4.1) +26 +27 +\\In the next line, we can feed into GLPK all of the +28 +inequalities defining the configuration for f ∗(xn) plus +29 +the equalities that set each of the partial derivatives +30 +of f ∗(xn) to zero. +31 +>> use GLPK to check the existence of a critical point +32 +of f ∗(xn) within the region of xn-values where +33 +f(xn) ≡ f ∗(xn) +34 +35 +>> if critical points exist: +36 +>> evaluate f ∗(xn) at any critical point cn +37 +>> store cn and f ∗(cn) if this is a new record minimum +38 +39 +>> return the minimum cn and f ∗(cn) values +This code verifies that the global minimum of f(xn) when n is at most 12 is +117/548, which is attained only at the coloring with endpoints given in Equation +(1) (without the N in each coordinate). +The number of pieces of the function f(xn) for n ≥ 14 grows very rapidly, +making an analysis of its critical points increasingly challenging. However, we +can guarantee that the optimal is always rational: +Corollary 4.5. For each n ∈ Z+, the minimum value of f(xn) is rational, +regardless of whether xn is restricted to be anti-symmetric or not. +Proof. This is nearly immediate from our proof structure: the minimum of +f(xn) occurs at some critical point of f(xℓ) with xℓ in the interior of where +f(xℓ) is defined, for an ℓ ≤ n. These critical points are defined by a system +of linear equations with rational coefficients. Whenever there are only finitely +many critical points, they all must have rational coordinates. On the other hand, +if there is a piece f ∗(xℓ) of the piecewise function f(xℓ) that has infinitely many +critical points, all of the critical points of f ∗(xℓ) attain the same constant value. +This implies that there still exists a critical point with rational coordinates where +the minimum is attained. Finally, because each piece of f(xℓ) is a quadratic +with rational coefficients, the minimum is thus also rational. +5 +Circle colorings +As a variation on the theme of enumerating monochromatic progressions within +colorings of [N], some authors have also investigated properties of arithmetic +21 + +progressions within colorings of the cyclic group ZN. For example, given a fixed +red and blue 2-coloring of Zp for p prime, the fraction of monochromatic 3-term +progressions that are red or blue depends only on the proportion of elements +colored red, and not on the exact positioning of the red and blue elements, [5, 12]. +Even when N is not prime, the fraction of monochromatic 3-term progressions +in ZN is bounded below by the quantity given if N were prime, [12]. +Inspired by these results, we now explore a continuous analogue to the enu- +meration of monochromatic progressions within 2-colorings of ZN. Color each of +the numbers in the unit circle S1 = {e2πiθ : θ ∈ [0, 1)} with red or blue, and con- +sider 3-term arithmetic progressions of the form (e2πix1, e2πi(x1+d), e2πi(x1+2d)) +for x1, d ∈ [0, 1). To properly discuss the “fraction” of these that are monochro- +matic for a given coloring, we introduce the uniform probability measure µ on +[0, 1) and randomly sample arithmetic progressions by independently choosing +x1, d ∈ [0, 1) according to µ. Using this framework, the probability of selecting a +monochromatic progression depends only on the Lebesgue measure of the set of +points colored red (i.e. the likelihood that, say, e2πix1 is red) and not on which +points were colored red, which is an analogous result to the one for 2-colorings +of the discrete group Zp. +Lemma 5.1. Let C : S1 → {0, 1} be any measurable coloring of S1 with +p := µ +�� +θ ∈ [0, 1) : C +� +e2πiθ� += 0 +�� +defined as the proportion of points colored red, and let m(C) be the set containing +all pairs (x1, d) ∈ [0, 1) × [0, 1) such that (e2πix1, e2πi(x1+d), e2πi(x1+2d)) are +monochromatic. Then, +(µ × µ)(m(C)) = 1 − 3p + 3p2. +In particular, if we randomly select a starting point x1 and an increment d +independently from each other according to the uniform distribution on S1, then +the probability that the associated 3-AP is monochrome depends only on the +proportion p of red points and not on how these points are distributed around +S1. +Proof. We take a probabilistic approach that follows the proof structure of The- +orem 6 from [12]. To that end, let x1 and d be independent draws from µ and +for i = 1, 2, 3 let Ai (respectively, Bi) be the event that the ith term in the +progression (e2πix1, e2πi(x1+d), e2πi(x1+2d)) is red (respectively, blue). Then, via +inclusion/exclusion, we have +P(A1 ∪ A2 ∪ A3) = +� 3 +� +i=1 +P(Ai) +� +− +� +� +� +1≤i 12 is the +same as the optimal coloring for n = 12. One possibility is to prove that the +colorings are no better for n = 14, and then argue that adding arbitrarily more +intervals is no better than adding just two more intervals. +Besides investigating how colorings of [N], ZN, [0, 1], and S1 affect the preva- +lence of monochromatic arithmetic progressions of length 3, there are other re- +lated problems that have yet to be explored. Perhaps the most natural question +to ask is how the analysis changes if we consider longer arithmetic progressions, +and the articles [18, 2, 12, 3] make partial progress in this direction for several +different lengths of progressions. A slightly less obvious question is to ask what +happens when we consider arithmetic progressions of color-dependent lengths. +For example, we could attempt to color [0, 1] or [N] in a way that simultane- +ously minimizes the fractions of monochromatic blue progressions of length 3 +and monochromatic red progressions of length 4. +Another natural generalization is to add more colors. What do the 3- and 4- +colorings of [0, 1] that minimize monochrome arithmetic progressions of length +3 look like? +Can anything be said about the rate at which the fraction of +monochrome progressions decays as the number of colors increases? All of these +questions have natural analogues in the setting of Ramsey theory as applied +to graphs, and of course these generalizations might interact in any number of +ways. +When the problems studied in this paper were first posed, it was unclear +whether or not colorings could perform better than random. Although they +can perform better than random in the cases we present in detail above, is this +also true for related problems? Recent work in [4] gives interesting insights into +some classes of problems where solutions must be better than random. +In addition to changing the number of colors or length of the progressions +we study, we could also consider colorings in other geometries. For example, +we wonder how to color an interval that has a gap in the middle in order +to minimize monochromatic APs therein. By varying the length of the gap, +we might gain insight into why antisymmetry is seemingly important in the +23 + +optimal block colorings of [0, 1] that we discuss above. Furthermore, we have +already seen that in the contexts of Zp for p prime and the continuous circle, the +performance of colorings with respect to 3-term progressions depends only on the +ratios of the colors present. What other algebraic and geometric settings exhibit +similar behavior? Alternatively, what would happen if we were to consider S1 +as in Section 5 but sample 3-APs by choosing the start point and increment +according to a different distribution than uniform? +7 +Acknowledgments +Computations were performed using High Performance Computing infrastruc- +ture provided by the Mathematical Sciences Support unit at the University of +the Witwatersrand, and for this the authors are thankful. +Additionally, the +authors are grateful for invaluable tips from Professor Antti Laaksonen on how +to optimize the code in Lemma 4.2. +References +[1] +David M. Bressoud. Proofs and Confirmations. Cambridge University Press, +Aug. 1999. isbn: 9780511613449. doi: 10.1017/cbo9780511613449. url: +http://dx.doi.org/10.1017/CBO9780511613449. +[2] +Steve Butler, Kevin P. Costello, and Ron Graham. “Finding Patterns +Avoiding Many Monochromatic Constellations”. 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Soc. 1.issue 1, +154 (1975), pp. vii+102. issn: 0065-9266. doi: 10.1090/memo/0154. url: +https://doi.org/10.1090/memo/0154. +A +Appendix: 20 Polygonal Regions +The 20 possible regions from Lemma 4.1 are given below. +1 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj ≤ xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(xi+1 − xi)(xj+1 − xj) +2 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj ≤ 2xk ≤ min(xi + xj+1, xi+1 + xj), +xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(xi+1 − xi)(xj+1 − xj) − (2xk − xi − xj)2/2 +3 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi+1 + xj ≤ 2xk ≤ xi + xj+1 ≤ xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(xi+1 − xi)(xj+1 + xi/2 + xi+1/2 − 2xk) +4 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj+1 ≤ 2xk ≤ xi+1 + xj ≤ xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(xj+1 − xj)(xi+1 + xj/2 + xj+1/2 − 2xk) +26 + +5 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +max(xi + xj+1, xi+1 + xj) ≤ 2xk ≤ xi+1 + xj+1 ≤ 2xk+1 +Region Area: +(2xk − xi+1 − xj+1)2/2 +6 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj, +max(xi + xj+1, xi+1 + xj) ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(xi+1 − xi)(xj+1 − xj) − (2xk+1 − xj+1 − xi+1)2/2 +7 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj ≤ 2xk ≤ min(xi + xj+1, xi+1 + xj), +max(xi + xj+1, xi+1 + xj) ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(xi+1 − xi)(xj+1 − xj) − (2xk − xi − xj)2/2 +− (2xk+1 − xi+1 − xj+1)2/2 +8 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi+1 + xj ≤ 2xk ≤ xi + xj+1 ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(xi2 − xi1)(xj2 + xi1/2 + xi2/2 − 2xk1) +− (2xk2 − xi2 − xj2)2/2 +9 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj+1 ≤ 2xk ≤ xi+1 + xj ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(xj+1 − xj) · (xi+1 + xj/2 + xj+1/2 − 2xk) +− (2xk+1 − xi+1 − xj+1)2/2 +10 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +max(xi + xj+1, xi+1 + xj) ≤ 2xk ≤ 2xk+1 ≤ xi+1 + xj+1 +Region Area: +(2xk − xi+1 − xj+1)2/2 − (2xk+1 − xi+1 − xj+1)2/2 +27 + +11 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj ≤ xi+1 + xj ≤ 2xk+1 ≤ xi + xj+1 +Region Area: +(xi+1 − xi)(2xk+1 − xj − xi/2 − xi+1/2) +12 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj ≤ 2xk ≤ xi+1 + xj ≤ 2xk+1 ≤ xi + xj+1 +Region Area: +(xi+1 − xi)(2xk+1 − xj − xi/2 − xi+1/2) +− (2xk − xi − xj)2/2 +13 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi+1 + xj ≤ 2xk ≤ 2xk+1 ≤ xi + xj+1 +Region Area: +(xi+1 − xi)(2xk+1 − 2xk) +14 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj ≤ xi + xj+1 ≤ 2xk+1 ≤ xi+1 + xj +Region Area: +(xj+1 − xj)(2xk+1 − xj/2 − xj+1/2 − xi) +15 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj ≤ 2xk ≤ xi + xj+1 ≤ 2xk+1 ≤ xi+1 + xj +Region Area: +(xj+1 − xj)(2xk+1 − xj/2 − xj+1/2 − xi) +− (2xk − xi − xj)2/2 +16 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj+1 ≤ 2xk ≤ 2xk+1 ≤ xi+1 + xj +Region Area: +(xj+1 − xj)(2xk+1 − 2xk) +28 + +17 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk ≤ xi + xj ≤ 2xk+1 ≤ min(xi + xj+1, xi+1 + xj) +Region Area: +(2xk+1 − xi − xj)2/2 +18 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi + xj ≤ 2xk ≤ 2xk+1 ≤ min(xi + xj+1, xi+1 + xj) +Region Area: +(2xk+1 − xi − xj)2/2 − (2xk − xi − xj)2/2 +19 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +2xk+1 ≤ xi + xj +Region Area: +0 +20 +xi +i+1 +j +j+1 +x +x +x +k+1 +x +k +x +Characterizing Inequalities: +xi+1 + xj+1 ≤ 2xk +Region Area: +0 +29 + diff --git a/GtAyT4oBgHgl3EQffPh0/content/tmp_files/load_file.txt b/GtAyT4oBgHgl3EQffPh0/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..626bfda84602930b60ef421772dcc1302caa6993 --- /dev/null +++ b/GtAyT4oBgHgl3EQffPh0/content/tmp_files/load_file.txt @@ -0,0 +1,1061 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf,len=1060 +page_content='From discrete to continuous: Monochromatic 3-term arithmetic progressions Torin Greenwood∗, Jonathan Kariv†, Noah Williams‡ December 31, 2022 Abstract We prove a known 2-coloring of the integers [N] := {1, 2, 3, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=', N} minimizes the number of monochromatic arithmetic 3-progressions under certain restrictions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A monochromatic arithmetic progression is a set of equally-spaced integers that are all the same color.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Previous work by Parrilo, Robertson and Saracino conjectured an optimal coloring for large N that involves 12 colored blocks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, we prove that the conjecture is optimal among anti-symmetric colorings with 12 or fewer colored blocks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We leverage a connection to the coloring of the continuous interval [0, 1] used by Parrilo, Robertson, and Saracino as well as by Butler, Costello and Graham.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Our proof identifies classes of colorings with permutations, then counts the permutations using mixed integer linear programming.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 1 Introduction Consider coloring each of the integers in [N] with one of r colors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A κ-term arithmetic progression is any subset of κ equally-spaced integers, denoted a κ- AP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' An arithmetic progression is monochromatic if every term is colored the same color.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Can we color [N] in a way that avoids all monochromatic κ-APs?' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A classic result is van der Waerden’s Theorem: Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1 (van der Waerden, [17]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any integers r, κ ≥ 1, there exists a number N such that every r-coloring of [N] has a monochromatic κ-AP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Given that monochromatic κ-APs are guaranteed to exist when enough num- bers are colored, we ask a refined question: what is the minimum number of monochromatic κ-APs that could exist?' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' To be more precise, define Cr(N) to be the set of r-colorings of [N].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any c ∈ Cr(N), let mκ(c) be the number of ∗Department of Mathematics, North Dakota State University, Fargo, ND USA, torin.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='greenwood@ndsu.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='edu †Isazi Consulting, Johannesburg, South Africa, jkariv@isaziconsulting.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='co.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='za ‡Department of Mathematical Sciences, Appalachian State University, Boone, NC USA, williamsnn@appstate.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='edu 1 arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='00336v1 [math.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='CO] 1 Jan 2023 monochromatic κ-APs induced by c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Finally, let APκ(N) be the total number of κ-APs in [N], regardless of whether they are monochromatic or not.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, we look at Pr,κ(N) := min c∈Cr(N) mκ(c) APκ(N).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The focus of this paper is to examine the minimum for monochromatic 3-APs within 2-colorings, P(N) := P2,3(N).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In 1999, Ron Graham proposed that limn→∞ P(n) = β for some constant, β, and offered a $100 prize for finding β.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Originally, it was not clear whether colorings could perform better than random in the long run: for large values of N, is it possible to color [N] so the probability that a randomly selected 3-AP is monochromatic is less than (1/2)3 + (1/2)3 = 1/4?' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' It is notable that the analogous question for 2-colorings of Zp is answered negatively for p prime.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Indeed, Lu and Peng [12] show that for a given 2-coloring of Zp, the fraction of 3-APs that are monochromatic depends only on the fraction of each color present in the coloring.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For our question concerning 2-colorings of [N], Parrilo et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' [14] and Butler et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' [2] verified independently but nearly simultaneously that it is possible to do better than random, and they found upper and lower bounds for the minimum monochromatic APs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The upper bound was attained through simu- lating good colorings and finding one that performed well.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' They landed on the following 12-block coloring: Explicitly, when coloring [N], the blocks would be approximately of the following sizes: �28N 548 , 6N 548, 28N 548 , 37N 548 , 59N 548 , 116N 548 , 116N 548 , 59N 548 , 37N 548 , 28N 548 , 6N 548, 28N 548 � (1) Due to this coloring, P(N) ≤ 117 548 + o(1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Note that this coloring is anti- symmetric: the left half of the coloring is a mirror image of the right half but uses opposite colors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In [2], Butler et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' performed many computer sim- ulations using genetic algorithms to find the optimal coloring, and noted that this same 12-block coloring consistently appeared regardless of the seed coloring with which they started.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' They noted that a remaining challenge would be to analyze the case of rapidly alternating colorings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The goal of this paper is to show that as N → ∞, the 2-coloring of [N] that has alternating color blocks with sizes given in Equation (1) is globally optimal among anti-symmetric colorings with at most 12 blocks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As far as the authors are aware, this is the first result of optimality under any restrictions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, we let ˜C2(N) be the 2-colorings of [N] that are anti-symmetric and have at most 12 contiguous segments of red or blue.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, define ˜P(N) = min c∈ ˜C2(N) m3(c) AP3(N).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Our main result is as follows: 2 Theorem 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Consider coloring each integer in [N] with either red or blue such that the coloring is anti-symmetric and has at most 12 contiguous blocks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, as N increases the minimum possible fraction of arithmetic progressions approaches 117 548.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' That is, limN→∞ ˜P(N) = 117 548.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Below, we provide a proof sketch that outlines the sections in the paper.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Sketch of proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' First, we will convert from discrete colorings of [N] to continu- ous colorings of [0, 1] with at most 12 contiguous segments, referred to as block colorings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' After restricting the number of color changes that can occur within a coloring, it turns out that optimizing the discrete colorings is the same as optimizing the continuous colorings, as described rigorously in Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' When switching to the continuous realm, we let a continuous coloring be a function c : [0, 1] → {0, 1}, where 0 and 1 (in the range) represent red and blue, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, we let f[0,1](c) be the fraction of arithmetic progressions in the coloring c that are monochromatic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We can represent this fraction geomet- rically by a BCG diagram, described by Butler, Costello, and Graham in [2] and illustrated in Figure 1 below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' When c consists of 12 contiguous segments, we label the endpoints of the coloring as (x0 = 0, x1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , x12 = 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As we allow the coloring c to vary, f[0,1](c) is a piecewise quadratic function in the xi.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Moreover, each piece of f[0,1](c) is determined completely by the relative ordering of the pairs of sums {xi + xj}, as described in Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Next, we aim to identify every piece of the quadratic function over all color- ings c of [0, 1] with 12 intervals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Using the GNU Linear Programming Kit [9], we count 371, 219 possible arrangements of {xi + xj} that could give distinct quadratics in f[0,1], as proved in Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 with the help of our code available online at https://cocalc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='com/TorinGreenwood/MonochromeSequences/Mo nochromaticProgressions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Finally, once we have identified the 371, 219 possible pieces in the quadratic function, we search for the global minimum of f[0,1] among all these pieces.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Fortunately, from Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='3, it turns out that f[0,1] is a continuous function with continuous partial derivatives.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Thus, we can minimize f[0,1] by search- ing for all critical points within each piece of the quadratic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Because f[0,1] is piecewise quadratic, its critical points are determined by systems of linear in- equalities (defining the domain of a piece of f[0,1]) and equalities (setting the partial derivatives of f[0,1] to zero), allowing us again to use linear programming to identify the critical points.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We describe our search for these critical points in Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4, completing the proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A byproduct of our proof structure is that among colorings with a fixed number of contiguous blocks, there exist optimal colorings with rational end- points, as described in Corollary 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In Section 5, we show that with respect to 2-colorings of the continuous unit circle S1, the fraction of monochromatic APs depends only on the measure of points colored red.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This is analogous to the results in [5, 12] that concern colorings of Zp for p prime.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 3 2 Background When searching for bounds on the number of monochromatic arithmetic pro- gressions in [N], Frankl, Graham, and R¨odl developed the following theorem: Theorem 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1 (Frankl, Graham, R¨odl, [7]).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For fixed r and κ, there exists ℓ > 0 so that the number of monochromatic κ-APs in any r-coloring of {1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , N} is at least ℓN 2 + o(N 2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This proved that a positive fraction of APs must be monochromatic in the long run, but gave no indication of how small ℓ could be.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Datskovsky made progress on a related problem in [5], analyzing the minimal number of monochromatic Schur triples in [N].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A Schur triple (a, b, c) from [N] is any triple of integers where a + b = c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Datskovsky investigated the minimum possible number of monochromatic Schur triples when coloring each integer red or blue, and proved that asymptotically, the minimum is N 2/11.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The proof relied on using a discrete Fourier transform, which yielded a combinatorial identity that broke down counts of Schur triples into a few easier to analyze sets.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Although our proof does not use the discrete Fourier transform, it also will transform a discrete problem into a continuous space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In [14], Parrilo et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' applied some of the tools from Datskovsky’s work to arithmetic progressions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Again, the authors found a combinatorial identity breaking down sets of arithmetic progressions into simpler sets, but it was no longer possible to enumerate these sets exactly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Instead, the authors ended up with bounds on the minimum number of monochromatic progressions possible in [N].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' They also identified the coloring shown in Equation (1) in the introduction above, and verified it was locally optimal among colorings with 12 intervals that are antisymmetric.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Our paper aims to prove that this coloring is optimal globally among the same set of colorings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Constellations are a generalization of APs studied in [2], where instead of all points being equally spaced like in an AP, the consecutive differences of terms must satisfy some fixed proportions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Butler et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' analyzed constellations by representing sets of monochromatic constellations using integrals of indicator functions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This led them to represent monochromatic regions in two-dimensional diagrams which we refer to as BCG diagrams, as illustrated in Figure 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Visu- alizing progressions via these diagrams is crucial to our proof, and provides the connection we need between discrete and continuous realms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' One important aspect of our proof is enumerating the number of ways pairwise sums {xi + xj} can be ordered for a list of positive real numbers x0 ≤ x1 ≤ .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' ≤ xn with n even and xi + xn−i = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This problem could be framed as counting the number of chambers in a hyperplane arrangement, and there already exists a rich set of tools for counting chambers, as seen for ex- ample in [16].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' However, in this paper, we use mixed integer linear programming, which is well-suited to determining whether a system of linear inequalities has a solution.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This coding approach was also employed by Miller and Peterson in [13] when they counted more sums than differences sets, and also by Laaksonen 4 in [10] when he counted closely-related arrangements of sums of pairs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' More details on this approach are given in Section 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The current best known bounds on the minimum number of monochromatic κ-APs in the general (non-antisymmetric) case for κ > 3 are found using an “unrolling” strategy, described in [12] and [3].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, an optimal coloring of some interval {1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , ℓ} for ℓ ≪ N is found explicitly, and then repeated to fill the interval [N].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Although this strategy works well for κ > 3, when κ = 3, the colorings do no better than random in the long run.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 3 Relationship between discrete and continuous case In this section, we define a precise connection between discrete 2-colorings of [N], and a natural continuous analogue of 2-coloring [0, 1].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' First, we pause to define a 3-AP in [N] formally: a 3-AP is any set of 3 terms (a, a+d, a+2d) each in [N] where d is any integer including negative values or zero.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' It is convenient for us to include the case where d ≤ 0 in our arguments, although this choice ultimately does not change which colorings minimize monochromatic APs nor the minimum they attain.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For the interval [0, 1], we identify any 3-AP (a, a + d, a + 2d) by its first and last term (a, a + 2d) in [0, 1] × [0, 1], now allowing d to be any real number.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We obtain a measure on the set of 3-APs in [0, 1] by choosing the starting and ending point of the progressions uniformly.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A coloring of the interval is defined to be a function c : [0, 1] → {0, 1}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In this section, we begin by discussing measurable colorings of [0, 1], which can be approximated in a standard way by bead colorings, defined below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, we show that minimizing monochromatic APs over all measurable colorings of [0, 1] is the same as minimizing all APs over just bead colorings, as formalized in Lemmas 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1, 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2, and 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='3 below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Next, we justify that every discrete coloring of [N] has a corresponding con- tinuous coloring of [0, 1], and that the fraction of monochromatic APs in the continuous coloring is a function of both the monochromatic APs and monochro- matic off-by-1 APs in the discrete coloring, as explained above and in Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Using this connection, we find that when the number of blocks of contiguous runs of colors in a coloring is bounded by n, the fraction of APs in a continuous coloring versus its discrete analogue is small as N grows large, formalized in Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Finally, this allows us to prove our main result of the section: that minimizing over discrete colorings with a fixed number of blocks is the same as minimizing over continuous colorings with the same number of blocks, stated rigorously in Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Now, we begin stating our results formally, starting with the definition of a Lebesgue-measurable coloring.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Definition 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A coloring of [0, 1] is Lebesgue-measurable if c−1(0) is Lebesgue- measurable (or equivalently c−1(1) is Lebesgue-measurable).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 5 Definition 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' A bead coloring of [0, 1] is a coloring where for some ℓ, each of the intervals ( i ℓ, i+1 ℓ ) is monochrome for i = 0, 1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , ℓ − 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Each interval ( i ℓ, i+1 ℓ ) is called a bead, and we sometimes refer to such a coloring as an ℓ-bead coloring.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We introduce bead colorings because they are the continuous analogue of coloring the integers [N] obtained by fattening each integer into an interval.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Our goal is to show that when optimizing colorings over the interval [0, 1], we may restrict our attention to bead colorings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We call the set of bead colorings B and the set of Lebesgue-measurable colorings M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Observe that B ⊂ M.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Finally we define a difference between two colorings as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Definition 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For two colorings ca ∈ M and cb ∈ M we define d(ca, cb) := µ({x | ca(x) ̸= cb(x)}), where µ is the usual Lebesgue measure on R.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Recall that we identify an arithmetic progression in [0, 1] by the pair of starting and ending points in [0, 1].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For a coloring c on [N], we define f[N](c) to be the fraction of arithmetic progressions that are monochromatic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Analogously, when c is a coloring of [0, 1], we have the following definition: Definition 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For a coloring c : [0, 1] → {0, 1}, let f[0,1](c) be the Lebesgue measure of the set of monochromatic arithmetic 3-term progressions (viewed as a subset of [0, 1]2) induced by the coloring c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We justify our restriction to bead colorings with the following standard measure-theoretic lemmas (proved for completeness momentarily): Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any two measurable colorings c1 and c2 of [0, 1], if d(c1, c2) < ϵ, then |f[0,1](c1) − f[0,1](c2)| < 4ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any measurable coloring cm of [0, 1] and any ϵ > 0 there exists a bead coloring cb such that cm and cb disagree on a set of measure at most ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As B ⊂ M, Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 immediately implies the following: Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Optimizing monochromatic 3-APs over bead colorings is the same as optimizing over all measurable colorings in the following sense: inf cb∈B f[0,1](cb) = inf cm∈M f[0,1](cm).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We begin with the proof of Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Proof of Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let A ⊂ [0, 1] be a set of measure ϵ, and consider flipping the colors of all elements in A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' There are three classes of monochromatic 3-APs that could be created or destroyed: the APs where the first, middle or last element is flipped (where some APs may belong to more than one class).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We consider the measure of each of these three classes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As the first and last elements of a progression are chosen uniformly, the corresponding classes have measure ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The middle element is the average of two uniform random variables, and so 6 has a triangular distribution on [0, 1] with maximum density 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Therefore the set of monochrome progressions whose middle term is in A would have measure at most 2ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Summing the measures of these three classes yields an upper bound for their union of 4ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We now justify Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2, whose proof is a standard measure-theoretic argument.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Proof of Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' By hypothesis, the set Xbl := c−1 m (0) of blue-colored el- ements of [0, 1] is measurable with finite measure.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' So, a standard result from measure theory (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' [15, Theorem 12]) establishes the existence of a finite disjoint collection of open intervals I1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , Iℓ ⊂ [0, 1] satisfying µ �� ℓ� i=1 Ii � \\ Xbl � + µ � Xbl \\ ℓ� i=1 Ii � < ϵ 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Since the rationals are dense in [0, 1], we can perturb the 2ℓ endpoints of the intervals {Ii}, each by some amount less than ϵ 4ℓ, to find a disjoint collection I′ 1, I′ 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , I′ ℓ of open intervals with rational endpoints.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let Ubl be the union of these intervals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, Ubl and Xbl have a symmetric difference of measure at most ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' It follows that the coloring cb defined by coloring each interval of Ubl blue is a bead coloring for which d(cb, cm) < ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Call a progression an off-by-1 AP if it is of the form (a, a + d, a + 2d ± 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We will show that we can easily compute f[0,1](cb) for a bead coloring cb with N beads by considering the colored beads as an integer coloring of [N], computing the number of 3-term APs in this sequence, and adding half of the off-by-1 APs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Recall that for a discrete coloring c, m3(c) is the number of monochromatic 3-APs induced by c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let m′ 3(c) be the number of monochromatic off-by-1 APs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, we have the following comparison between colorings of [0, 1] with exactly N beads (of not necessarily alternating colors) and corresponding colorings of [N].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let cb be an N-bead coloring of [0, 1], and let c∗ b be the discrete coloring of [N] corresponding to cb, where the number i is colored blue if and only if the ith bead in cb is colored blue.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, f[0,1](cb) = m3(c∗ b) + m′ 3(c∗ b)/2 N 2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Consider a randomly chosen progression in [0, 1] identified by its end- points (a, b), and a fixed N-bead coloring cb.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We use a probabilistic proof, so we rewrite (µ × µ)((a, b) ∈ [0, 1]2 : (a, b) is monochromatic) =: P((a, b) monochromatic), where µ × µ is the usual Lebesgue measure on R2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We will condition on which beads S and E contain a and b.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let M be the bead containing the middle 7 element of the progression.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Given a bead coloring of [0, 1], it is useful to define the distance between two beads A and B, db(A, B) as 0 when A = B and as one more than the number of other beads strictly between A and B otherwise.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Note that when db(S, E) is even, then S, M, and E must form a 3-AP of beads.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' On the other hand, when db(S, E) is odd, S, M, and E form an off-by-one progression and M could be two possible beads depending on the internal positioning of a and b within S and E.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Formally, letting {Bi}N i=1 be the set of beads, f[0,1](cb) = � i,j P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) = � d(Bi,Bj) even P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) + � d(Bi,Bj) odd P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) (2) Now, P(a ∈ Bi, b ∈ Bj) = 1/N 2 for each i and j since a and b are indepen- dently and uniformly distributed among the beads.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Also, because our coloring is fixed, when db(Bi, Bj) is even P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) is 0 or 1 depending on whether or not the beads S, M, and E form a monochromatic 3-term AP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Thus, � d(Bi,Bj) even P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) = m3(c∗ b) · 1 N 2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (3) When db(Bi, Bj) is odd, there are two choices for M: B(i+j−1)/2 or B(i+j+1)/2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Thus, we can condition on these two choices: P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) = P((a, b) mono.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='|a ∈ Bi, b ∈ Bj, M = B(i+j−1)/2) · P(M = B(i+j−1)/2|a ∈ Bi, b ∈ Bj) + P((a, b) mono.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='|a ∈ Bi, b ∈ Bj, M = B(i+j+1)/2) · P(M = B(i+j+1)/2|a ∈ Bi, b ∈ Bj) Here, P(M = B(i+j−1)/2|a ∈ Bi, b ∈ Bj) = P(M = B(i+j+1)/2|a ∈ Bi, b ∈ Bj) = 1/2 because a and b are positioned uniformly within S and E.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Additionally, P((a, b) monochromatic|a ∈ Bi, b ∈ Bj, M = B(i+j−1)/2) is 0 or 1 depending on whether the off-by-1 progression in c∗ b is monochromatic or not.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Hence, these two terms combined simplify to � d(Bi,Bj) odd P((a, b) monochromatic|a ∈ Bi, b ∈ Bj) · P(a ∈ Bi, b ∈ Bj) = 1 2N 2 m′ 3(c∗ b).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (4) 8 Plugging in Equations (3) and (4) into Equation (2) completes the proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Much of the rest of this paper will deal with a particular class of colorings called “block colorings” which we now define.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Informally, they are partitions of I into disjoint intervals which are alternately colored red and blue.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Definition 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For a finite collection of endpoints {xi} such that 0 = x0 < x1 < x2 < · · · < xn−1 < xn = 1, we define the associated “block” coloring as the coloring where the n intervals Ji = (xi−1, xi) (for i ∈ {1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , n}) are all monochrome and alternate in color.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Note that the colors assigned to the endpoints {xi} (or indeed to any points within a measure zero set) do not matter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' With these definitions, we can now compare the performance of discrete colorings with their continuous analogues.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let C(N, n) be the set of 2-colorings of [N] with at most n contigu- ous blocks of colors.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any coloring c ∈ C(N, n), let c∗ be the corresponding block coloring of [0, 1] where the interval [(i − 1)/N, i/N) is colored blue by c∗ if and only if i ∈ [N] is colored blue by c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, max c∈C(N,n) ��f[0,1](c∗) − f[N](c) �� = O � n N � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, there exists a C > 0 independent of N and n such that |O(n/N)| < Cn/N for all positive integers n and N.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Our proof will use Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4 to rewrite f[0,1](c∗) in terms of f[N](c).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Before proceeding with this, we will interpret the number of off-by-1 monochro- matic APs induced by c, m′ 3(c), in terms of the regular monochromatic APs, m3(c).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We claim the following: m′ 3(c) = 2m3(c) + O(nN).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (5) To verify this, note that each AP (a, a + d, a + 2d) in [N] corresponds almost bijectively to a pair of off-by-1 APs by moving the first or last endpoint inwards by one: (a + 1, a + d, a + 2d) or (a, a + d, a + 2d − 1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (When N is odd, this misses exactly two off-by-1 APs: (1, (N −1)/2, N) and (1, (N +1)/2, N).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' When N is even, this is truly a bijection.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=') Using this near bijection, we now compare when APs and off-by-1 APs are monochromatic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Under this contraction action, the only time an AP (a, a + d, a + 2d) is monochromatic while one of its corresponding off-by-1 APs is not monochromatic is when a or a + 2d is adjacent to a number of the opposite color, and the same could be said if the original AP is not monochromatic but the off-by-1 AP is.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' If our coloring only has n intervals total, there are only n−1 ways to position a immediately before a color change, and similarly only n − 1 ways to position a + 2d immediately after a color change.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Since d can still be chosen freely, there are O(nN) possible off-by-1 APs that disagree with their corresponding APs on being monochromatic, verifying our claim.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 9 Now, in the notation of Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4, we see that (c∗)∗ = c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Thus, f[0,1](c∗) = m3(c) N 2 + m′ 3(c)/2 N 2 = 2m3(c) + O(nN) N 2 = m3(c) N 2/2 + O � n N � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The proof of the lemma will be complete if we can verify the following: m3(c) N 2/2 = f[N](c) + O � 1 N � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' To see this, recall that by definition f[N](c) = m3(c)/ AP3(N), so that m3(c) N 2/2 − f[N](c) = m3(c) AP3(N) · AP3(N) − N 2/2 N 2/2 .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (6) We have m3(c) ≤ AP3(N), so that the first fraction on the right in Equation (6) is at most 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Next, note that AP3(N) = N 2/2+O(N): it is easy to compute this explicitly for when N is even or odd.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' But, intuitively, if we pick two numbers x and y from [N] at random, there are N 2 ways to do this, and about half the time x − y is even and these correspond to the start and end of a 3-AP.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Therefore, AP3(N) − N 2/2 = O(N), and plugging this into Equation (6) completes the proof with m3(c) N 2/2 − f[N](c) = O � 1 N � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Finally, we end this section with the result rigorously justifying our conver- sion between discrete and continuous colorings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Let Sn be the block 2-colorings of [0, 1] with at most n blocks, and let C(N, n) be the 2-colorings of [N] with at most n contiguous blocks, where n = o(N) as N approaches infinity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, minimizing monochromatic APs over Sn is the same as minimizing monochromatic APs over C(N, n) in the following sense: lim N→∞ ���� inf c∈Sn f[0,1](c) − min c∈C(N,n) f[N](c) ���� = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, we consider block colorings of [0, 1] where the edge of a block is at a possibly irrational number.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' However, as we will see later, all optimal colorings of [0, 1] with a fixed number of blocks must have rational endpoints.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 10 Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This is mostly a standard ϵ argument, so let ϵ > 0 be given.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We aim to show for all N sufficiently large, ���� inf c∈Sn f[0,1](c) − min c∈C(N,n) f[N](c) ���� ≤ ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We prove this in two halves, first proving the infimum is nearly bounded above by the minimum, and then arguing the reverse.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Consider any coloring ˜c ∈ Sn.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, by Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1, for every N sufficiently large, we can find a n-block coloring ˜cN of [0, 1] with endpoints of the form r/N for r an integer such that ��f[0,1](˜c) − f[0,1](˜cN) �� < ϵ/4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (7) This is true because we can round each endpoint to the nearest 1/N.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, we define ˜c∗ N to be the coloring of [N] where i is colored blue if and only if the ith block of ˜cN is blue.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Note that ˜c∗ N still only has at most n blocks, and that using the notation from Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5, (˜c∗ N)∗ = ˜cN.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' So, from Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5, for N sufficiently large (independent of the colorings ˜c, ˜cN, ˜c∗ N), |f[0,1](˜cN) − f[N](˜c∗ N)| = O(n/N).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' (8) By choosing N sufficiently large (independent of the colorings ˜c, ˜cN, ˜c∗ N), Equa- tions (7) and (8) imply min c∈C(N,n) f[N](c) ≤ f[N](˜c∗ N) < f[0,1](˜c) + ϵ where this bound holds for all N sufficiently large and for all ˜c ∈ Sn.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Therefore, for all N sufficiently large, min c∈C(N,n) f[N](c) ≤ inf c∈Sn f[0,1](c) + ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Now, we prove the reverse inequality: consider any coloring ˆc of [N], and let ˆc∗ be the coloring of [0, 1] induced by ˆc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Again, from Lemma 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='5, for N sufficiently large, ��f[N](ˆc) − f[0,1](ˆc∗) �� < ϵ, and since this is true for any coloring ˆc ∈ C(N, n), this proves that for N sufficiently large, inf c∈Sn f[0,1](c) ≤ min c∈C(N,n) f[N](c) + ϵ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Combining this with the complementary inequality above completes the proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' At this point, we have justified that once bounding the number of blocks in our coloring, optimizing colorings of [N] is the same as optimizing colorings of [0, 1].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We only make use of this result when the number of blocks n = 12 because that is the conjectured global optimal number of blocks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' But, the same proof shows that switching to the continuous realm works whenever n = o(N) as N → ∞.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 11 first term in progression third term in progression 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='8 1 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='8 1 coloring of [0, 1] Figure 1: Below the horizontal axis a coloring, c, is depicted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The horizontal axis represents the first term a in an arithmetic progression, and the vertical axis represents the third term a+2d in the progression.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Whenever a point in the diagram is colored red (blue), this corresponds to the progression (a, a+d, a+2d) being colored red (blue) by c.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 4 Proofs for the continuous case 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1 Colorings can be represented by BCG diagrams Consider any block coloring c : [0, 1] → {0, 1} of the interval with endpoints of the blocks given by {x0, x1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , xn} with x0 = 0 and xn = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Without loss of generality, assume that the first block (x0, x1) is colored blue, and alternate colors for each remaining interval.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Recall that the colors of the endpoints of the blocks can be assigned in any way, since this does not change the probability of selecting a monochromatic progression.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In [2], Butler, Costello, and Graham proposed a method of visualizing the monochromatic arithmetic progressions associated to a coloring in terms of di- agrams like in Figure 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Any arithmetic progression (a, a + d, a + 2d) can be identified uniquely by its first and last coordinates, which are represented by the horizontal and vertical axes of such a diagram.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Note that the diagram is divided into vertical strips, horizontal strips, and northwest/southeast diagonal strips.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Consider any region identified as the intersection of one horizontal, one vertical, and one diagonal strip.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For a block coloring, this region corresponds 12 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='8 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 0 0 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='4 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='6 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='8 xto a collection of monochromatic arithmetic progressions if and only if the in- dices of the vertical, horizontal, and diagonal strips defining the region all have matching parities.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Because the total area of the square in any diagram like Figure 1 is one, the measure of the set of monochromatic sequences is equal to the sum of the areas of the red and blue regions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In Theorem 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1 of [2], Butler et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' express the total colored area as the sum of two integrals involving an indicator function.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Their work applied to constellations, a generalization of arithmetic progressions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Here, we instead derive explicit polynomial equations for the areas.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Consider any one colored region in such a diagram.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As the endpoints xi are perturbed slightly, the region remains the same type of polygon although its dimensions may change.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This implies that the area of each region can be represented locally as a quadratic in the variables {xi}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Denote a block coloring c by its list of endpoints x := (x0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , xn).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Then, summing over all monochromatic regions shows that the measure of the monochromatic progressions, f[0,1](x), is locally quadratic in the {xi}, too.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' We now denote f(x) := f[0,1](x).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' When we restrict f to act on colorings with exactly n blocks, we will write f(xn).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As x varies, the regions in the diagram change polygon type.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Thus, for each n, f(xn) is a piecewise function that is locally quadratic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In order to minimize f globally, we wish to identify the boundaries of these pieces in terms of x.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The following lemma describes how to identify the polygons in such a diagram.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The region that is the intersection of the ith vertical strip, jth horizontal strip, and kth diagonal strip of a diagram is empty or forms a closed polygon.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The type of polygon is determined by testing whether each of the four values {xi + xj, xi + xj+1, xi+1 + xj, xi+1 + xj+1} is greater than or less than the two values {2xk, 2xk+1}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' If this ordering is known, the area of the cor- responding region can be expressed as a quadratic polynomial in the variables {xi, xi+1, xj, xj+1, xk, xk+1}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Proof.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In the diagrams like in Figure 1, the horizontal lines all are given by {y = xi}n i=0 and the vertical lines by {x = xi}n i=0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' At any point (x, y) in the diagram, the middle value in the corresponding arithmetic progression is (x+y)/2, and setting this equal to any endpoint in our coloring implies that the diagonal lines are given by {y = 2xi − x}n i=0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' As described above, for any triple (i, j, k) where i, j, k ∈ {0, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , 12} all have matching parities, the intersection of the ith vertical strip, jth horizontal strip, and kth diagonal strip corresponds to a region of monochromatic arithmetic progressions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' To determine the shape of the region of the monochromatic progressions, first consider the rectangle formed by the intersection of the ith vertical strip and jth horizontal strip.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The corners of this rectangle have coordinates (xi, xj), (xi+1, xj), (xi, xj+1), and (xi+1, xj+1), as labelled in Figure 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In order for the intersection of this rectangle with the kth diagonal strip to be non-empty, we need the upper diagonal line y = 2xk+1 − x to be above the lower left corner of the rectangle, (xi, xj), and the lower diagonal line y = 2xk − x to be below the upper right corner of the rectangle, (xi+1, xj+1).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' This is the same as requiring the inequalities 2xk+1 ≥ xi + xj and 2xk ≤ xi+1 + xj+1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 13 ith vertical strip jth horizontal strip kth diagonal strip (x , x ) i+1 j+1 (x , x ) i+1 j (x , x ) i j (x , x ) i j+1 y = 2x - x k y = 2x - x k+1 Figure 2: Above is the intersection of the ith vertical strip, jth horizontal strip, and kth diagonal strip determined by a block coloring with endpoints x = (x0, x1, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' , xn).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' Whether the intersection is empty can be determined by comparing the diagonal lines {y = 2xk − x, y = 2xk+1 − x} to the corners of the box {(xi, xj), (xi+1, xj+1)}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' xi i+1 j j+1 x x x k+1 x k x Characterizing Inequalities: xi+1 + xj ≤ 2xk ≤ xi + xj+1 ≤ xi+1 + xj+1 ≤ 2xk+1 Region Area: (xi+1 − xi)(xj+1 + xi/2 + xi+1/2 − 2xk) xi i+1 j j+1 x x x k+1 x k x Characterizing Inequalities: 2xk ≤ xi + xj,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' max(xi + xj+1,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' xi+1 + xj) ≤ 2xk+1 ≤ xi+1 + xj+1 Region Area: (xi+1 − xi)(xj+1 − xj) − (2xk+1 − xj+1 − xi+1)2/2 Figure 3: Illustrated here are two different ways that the kth diagonal strip can intersect with the ith horizontal and jth vertical strip in a coloring.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The resulting monochromatic region is shaded in gray, and the area of the region is given as a quadratic in x below the diagram.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The type of polygon is determined by the partial permutation given below each diagram.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The other 18 possibilities are enumerated in Appendix A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 14 Additionally, the type of polygon formed by the intersection of the strips is determined by whether the two diagonal lines y = 2xk − x and y = 2xk+1 − x are above or below each of the four corners of the box.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' For any specific relation- ship between the lines and the four corners, some basic geometric arguments allow us to find the area of the polygon enclosed by the strips in terms of {xi, xi+1, xj, xj+1, xk, xk+1}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' It turns out that there are 20 possible arrange- ments of the lines that yield distinct polygons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In Figure 3, two possibilities are given, along with the corresponding quadratic equations for their areas.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' The full list of 20 polygons is given in Appendix A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='2 Enumerating BCG diagrams Now that we have identified criteria that allow us to determine the shape of each monochromatic region in a diagram, we wish to compute how many collections of shapes are possible between all diagrams.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' In other words, we now know that for each fixed n the function f(xn) is a piecewise quadratic function in the endpoints xn, but we would like to identify how many pieces it has.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content=' From Lemma 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/GtAyT4oBgHgl3EQffPh0/content/2301.00336v1.pdf'} +page_content='1, we have that the ordering of the pairwise sums {xi + xj}0≤i 0. The resource provisioning cost is given +by Φw +p = qr +� +k∈K +� +hw +k + � +m∈M +� +ow +mbw +k,m + ow +mcw +k,m +�� +. +Slice adjustment cost: The cost component characterizes the +difference between two subsequent planning decisions, i.e., the +cost for adjusting the amount of the reserved spectrum and +computing resources. For computing resources, VM instances +can be resized via advanced virtualization techniques in prac- +tical systems, e.g., Kubernetes [14]. Here, qs represents the +unit price of adjusting a unit of reserved network resources. +Hence, the slice adjustment cost is given by +Φw +s =qs1 +� +ow−1 +k,m = 1 ∧ ow +k,m = 1 +� +· +� +k∈K +�� +hw +k − hw−1 +k +�+ ++ +� +m∈M +�� +bw +k,m − bw−1 +k,m +�+ ++ +� +cw +k,m − cw−1 +k,m +�+�� +, +(8) +where +1 {·} +is +an +indicator +function +and +1 +� +ow−1 +k,m = 1 ∧ ow +k,m = 1 +� +indicates that slice k is deployed +in the previous and current planning windows. +SLA revenue: The cost component characterizes the benefit +caused by QoS satisfaction, i.e., the achieved service delay of +each slice. The piece-wise SLA revenue function is denoted +by +Ωk (D) = +� +� +� +� +� +� +� +qb, +if D < θ +′ +k, +qb +� +D−θ +′ +k +θk−θ′ +k +� +, +if θ +′ +k ≤ D ≤ θk, +−qp, +if D > θk. +(9) +Here, qb > 0 is the highest unit revenue once a slice’s SLA +is satisfied, and qp > 0 is the unit penalty once the slice’s +SLA is violated. Obviously, qp > qb for discouraging slice’s +SLA violation. In addition, θ +′ +k < θk represents the threshold +achieving the highest revenue. For simplicity, we set θ +′ +k = +θk/2 in the simulation. The overall SLA revenue of all slices +is given by Φw +q = � +k∈K Ωk +� ¯Dw +k +� +. +Taking all cost components into account, the overall network +slicing cost in the entire slice lifecycle (i.e., all planning win- +dows) is given by Φ (ow, Bw, Cw, hw, {xt +k, yt +k}t∈T ,k∈K) = +� +w∈W +� +Φw +d + Φw +p + Φw +s − Φw +q +� +, which is adopted to evalu- +ate network slicing performance. +III. PROBLEM FORMULATION +The network slicing problem aims to minimize the network +slicing cost via determining network planning decisions at +each planning window and network operation decisions at each +operation slot for each slice, which is formulated as: +P0 : +min +{ow,Bw,Cw,hw}w∈W +{xt +k,yt +k}t∈T ,k∈K,w∈W +� +w∈W +Φ (ow, Bw, Cw, hw) +s.t. (1), (2), (3), (4), (5), and (6). (10a) +In Problem P0, the network planning and operation decision +making are coupled in two timescales, which should be jointly +optimized. To address the challenge, we first decouple the +problem into a large-timescale network planning subproblem +and multiple small-timescale network operation subproblems. +Subproblem 1: Network planning subproblem is to mini- +mize the network slicing cost across all the planning windows, +which is formulated as: +P1 : +min +{ow,Bw, +Cw,hw}w∈W +� +w∈W +Φ (ow, Bw, Cw, hw) +s.t. (1), (2), (3), and (4). +(11a) +Addressing the above subproblem requires network traffic +information of all planning windows, which is difficult to +be known a priori. To solve it, we leverage an RL method +to design a network planning algorithm, which makes online +decisions under spatial-temporally varying vehicle traffic. +Subproblem 2: Network operation subproblem is to sched- +ule network resources of each slice to active vehicles with +random task arrivals with the objective of minimizing average +service delay, which is formulated as: +P2 : min +xt +k,yt +k +Dt +k(xt +k, yt +k) +s.t. (5) and (6). +(12a) +In the above subproblem, radio spectrum resource allocation +and task dispatching decisions jointly impact the service +delay performance. To solve the problem, we analyze the +subproblem property and design an optimization algorithm to +make real-time network operation decisions. +IV. LEARNING-BASED NETWORK SLICING ALGORITHM +In this section, we solve two subproblems in Sections IV-A +and IV-B, respectively. Finally, we present the TWAS algo- +rithm for jointly optimizing planning and operation decisions +in Section IV-C. +A. Network Operation Optimization +We can observe that the radio spectrum allocation de- +cision only impacts offloading delay component, and the +task dispatching decision only impacts the computation delay +component. Moreover, both decisions are independent in each +BS. Hence, the radio spectrum allocation and task dispatching +decisions can be optimized individually at each BS. +1) Radio Spectrum Allocation Optimization: From (7), the +radio spectrum allocation optimization problem is equivalent +to minimizing the task offloading delay at each BS, i.e., +Pr +m : min +yt +k +� +n∈N tm +ξk +yt +k,nbw +k,mRtn +s.t. (5). +(13a) +The objective function can be proved to be convex since its +second-order derivative is positive. In addition, the constraint +is convex. Hence, problem Pr +m is a convex optimization +problem. Using the Karush-Kuhn-Tucker conditions [15], the +optimal radio spectrum resource allocation decision is +(yt +k,n)⋆ = +� +1/Rtn +� +i∈N tm +� +1/Rt +i +, ∀n ∈ N t +m. +(14) + +5 +2) Task Dispatching Optimization: Similarly, from (7), task +dispatching optimization is to minimize the task processing +delay, which is formulated as: +Pw +m : min +xt +k,m +dt +k,m,e +� +At +k,m − xt +k,m +� ++ dt +k,m,cxt +k,m +s.t. (6). +(15a) +The above objective function can be rewritten as +Ψ(xt +k,m) = dt +k,m,e +� +At +k,m − xt +k,m +� ++ dt +k,m,cxt +k,m += ν1ξk +2 +(xt +k,m)2 + +� +νt +2 − ν1ν3 − ξkAk,mν1 +2 +� +xt +k,m ++ ν1νt +3At +k,m. +(16) +Here, ν1 = +ηk +cw +k,mFe +> 0, νt +2 = dt +r + +ηkξk +hw +k Fc , and ν3 = +Qk,m + Ak,m+1 +2 +ξk. Since the second-order derivative of the +objective function ∂2Ψ(xt +k,m)/∂2xt +k,m = νt +1ξk > 0, the +problem is a convex optimization problem [15]. The optimal +task dispatching decision is given by +(xt +k,m)⋆ = 2νt +2 + ξkν1Ak,m − 2ν1νt +3 +2ν1ξk +, ∀m ∈ Mw. +(17) +B. Network Planing Optimization +The network planning problem is a stochastic optimization +problem to minimize the network slicing cost, which can be +transformed into a Markov decision process (MDP) [11]. The +components of the MDP are defined as follows. +1) Action, which is consistent with planning decisions, +including slice deployment, radio spectrum and computing +resource provisioning at BSs, and cloud computing resource +provisioning, i.e., Aw += +{ow, Bw, Cw, hw}. The action +dimension is Ms + 2KM + K. +2) State, which includes average vehicle traffic density in +the current planning window and the planning decisions in the +previous window due to the switching cost. The entire area is +divided into J disjoint regions, and the average vehicle traffic +density of all regions is denoted by Λw ∈ RJ×1. As such, the +state is given by Sw = {Λw, ow−1, Bw−1, Cw−1, hw−1}. The +state dimension is 2KM + M + K + J. +3) Reward, which is defined as the inverse of the net- +work slicing cost in the current planning window, i.e., +Rw (Sw, Aw) = −Φ (ow, Bw, Cw, hw) . Note that minimiz- +ing the network slicing cost is equivalent to maximizing the +cumulative reward. +Upon state Sw, the learning agent takes action Aw, and the +corresponding reward Rw (Sw, Aw) is obtained, along with +the state evolves into new state Sw+1. With the above setting, +our goal is to obtain an optimal planning policy π⋆ ∈ Π +which makes decisions based on the observed state, thereby +maximizing the expected long-term cumulative reward. As +such, problem P2 can be formulated as the following MDP: +P′ +2 : max +π∈Π E +� +lim +W →∞ +W +� +w=1 +(ϕ)wRw (Sw, Aw) |π +� +, +(18a) +where ϕ > 0 is the discount factor. Since vehicle traffic density +is continuous, the action-state space can be prohibitively large. +To address this issue, an RL algorithm can be adopted. +Algorithm 1: TAWS algorithm. +1 for training episode =1, 2, ... do +2 +for planning window w = 1, 2, ..., W do +3 +Generate planning decisions via the actor network; +4 +for each slice in parallel do +5 +for operation slot t = 1, 2, ..., T do +6 +for each BS in parallel do +7 +Make radio spectrum allocation and task +dispatching decisions by (14) and (17); +8 +Calculate the instantaneous service delay; +9 +Measure the average service delay within the +planning window; +10 +Collect vehicle traffic density of all regions, and +observe reward Rw and new state Sw+1; +11 +Store transition {Sw, Aw, Rw, Sw+1} in the +experience replay buffer; +12 +Sample a random minibatch of transitions from the +experience replay buffer; +13 +Update the weights of neural networks; +C. Proposed TAWS Algorithm +We present the TAWS algorithm to jointly solve the entire +network slicing problem P0, collaboratively integrating RL +and optimization methods. The core idea of TAWS is to adopt +an RL method for network planning decision making and an +optimization method for network operation decision making. +The service delay performance is measured at the end of each +planning window and then incorporated into the reward in +the RL framework, such that the interaction between network +planning and operation stages can be captured. The TAWS +algorithm is shown in Algorithm 1. +The RL method is based on the deep deterministic policy +gradient (DDPG) algorithm [16], [17], which consists of +four neural networks, i.e., actor evaluation network, critic +evaluation network, actor target network, and critic target +network. In the initialization phase, all neural networks and +the environment are initialized. The procedure of the TAWS +is two-step: 1) Network slicing decisions are generated and +executed. The actor network outputs the planning decisions +Aw, which is clipped to feasible decision space. The network +operation decisions are generated via the optimization method, +and the service delay performance is measured at the end +of each planning window. The reward Rw can be obtained +and the new state can be observed Sw+1. The transition tuple +{Sw, Aw, Rw, Sw+1} is stored in the experience replay buffer +for updating neural networks; and 2) Neural networks are +updated. A mini-batch of transitions are randomly sampled +from the experience replay buffer to update the weights of +neural networks. Specifically, the critic network is updated +by minimizing the loss function, and the actor network is +updated via the policy gradient method. Then, actor and critic +target networks are updated by slowly copying the weights of +evaluation networks. +V. SIMULATION RESULTS +We evaluate the performance of the proposed algorithm on +real-world vehicle traffic traces in urban vehicular networks. +We consider a 1,000×1,000 m2 simulation area, which is + +6 +Table I +SIMULATION PARAMETERS. +Parameter +Value +Parameter +Value +No +−174 dBm +I +−164 dBm +Pv +27 dBm +β +20 MHz +dr +0.15 sec +J +16 +To +1 sec +Tp +10 min +Fc +100 GHz +Fe +10 GHz +Bm +10 +Cm +10 +ξ1, ξ2 +{0.6, 2} Mbit +η1, η2 +{1000, 200} cycles/bit +θ1, θ2 +{100, 200} ms +θ +′ +1, θ +′ +2 +{50, 100} ms +0 +100 +200 +300 +400 +500 +Training Episodes +1000 +1500 +2000 +2500 +3000 +3500 +4000 +4500 +Overall System Cost +Five-Point Moving Average +(a) Convergence +1.4 +1.6 +1.8 +2 +Task Arrival Rate (Packet/sec) +0 +200 +400 +600 +800 +1000 +1200 +1400 +1600 +Overall System Cost +Proposed +Short Term Optimization +(b) Network slicing cost +Fig. 2. +Performance of the proposed TWAS algorithm. +covered by two SBSs and an MBS. Each SBS has a coverage +radius of 300 m, and the MBS located in the centre covers +the entire simulation area. The vehicle traffic density of the +simulation area is measured by a unit of a small region +of 250×250 m2, i.e., J = 16. This dataset is collected by +Didi Chuxing GAIA Initiative2 and contains vehicle traces in +the second ring road in Xi’an collected from taxis that are +equipped with GPS devices. The periods of a planning window +and an operation slot are set to 10 minutes and 1 second, +respectively. The period of the slice lifecycle is set to 4 +hours, including 24 planning windows. The task arrivals of +two services both follow Poisson processes with different task +arrival rates. We construct two slices for supporting two types +of delay-sensitive services. One is an object detect service +whose service delay requirement is 100 ms, while the other +is an in-vehicle infotainment service whose service delay +requirement is 200 ms. Regarding the TWAS algorithm, the +neuron units in hidden layers of both actor and critic networks +are set to 128 and 64. Important simulation parameters are +summarized in Table I. +As shown in Fig. 2(a), we present the overall network slicing +cost with respect to training episodes. All simulation points are +processed by a five-point moving average in order to highlight +the convergence trend of the proposed algorithm. It can be +seen that the proposed algorithm converges after 500 training +episodes. +As shown in Fig. 2(b), we compare the performance of +the proposed algorithm and a short term optimization bench- +mark. The basic idea of the benchmark is to minimize the +network slicing cost at each individual planning window. Since +planning decisions are discrete, a simple exhaustive searching +method is adopted to obtain the optimal one-shot planning +decisions. Firstly, it can be seen that the proposed algorithm +can greatly reduce the network slicing cost as compared to the +benchmark. Specifically, when the task arrival rate is 2 packets +per second, the proposed algorithm can reduce the network +slicing cost by 23%. The reason is that the proposed algorithm +takes the switching cost between two consequent planning +windows into account, while the benchmark scheme does +2Didi Chuxing Dataset: https://gaia.didichuxing.com. +not. Secondly, the overall network slicing cost increases with +the increase of the task arrival rate, because more radio and +computing resources are consumed in heavy traffic scenarios. +VI. CONCLUSION +In this paper, we have investigated a network slicing prob- +lem in edge-cloud orchestrated vehicular networks. A two- +stage network slicing algorithm, named TWAS, has been +proposed to jointly make network planning and operation +decisions in an online fashion. The TAWS can adapt to +network dynamics in different timescales, including spatial- +temporally varying vehicle traffic density and random task +arrivals. Simulation results demonstrat that the TAWS can re- +duce the network slicing cost as compared to the conventional +scheme. For the future work, we aim to determine the optimal +planning window size for minimizing the network slicing cost +under vehicular network dynamics. +REFERENCES +[1] C. Campolo, A. Molinaro, A. Iera, and F. Menichella, “5G network +slicing for vehicle-to-everything services,” IEEE Wireless Commun., +vol. 24, no. 6, pp. 38–45, 2017. +[2] A. Kaloxylos, “A survey and an analysis of network slicing in 5G +networks,” IEEE Commun. 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ICLR, 2016. + diff --git a/IdE1T4oBgHgl3EQfrwV8/content/tmp_files/load_file.txt b/IdE1T4oBgHgl3EQfrwV8/content/tmp_files/load_file.txt new file mode 100644 index 0000000000000000000000000000000000000000..ed2abae7ccd4f8caa86a51d96426ab6c1dc25c97 --- /dev/null +++ b/IdE1T4oBgHgl3EQfrwV8/content/tmp_files/load_file.txt @@ -0,0 +1,516 @@ +filepath=/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf,len=515 +page_content='1 Cost-Effective Two-Stage Network Slicing for Edge-Cloud Orchestrated Vehicular Networks Wen Wu‡,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Kaige Qu⋆,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Peng Yang∗,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Ning Zhang†,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Xuemin (Sherman) Shen⋆,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' and Weihua Zhuang⋆ Frontier Research Center,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Peng Cheng Laboratory,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Shenzhen,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' China‡ Department of Electrical and Computer Engineering,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' University of Waterloo,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Waterloo,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Canada⋆ School of Electronic Information and Communications,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Huazhong University of Science and Technology,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' China∗ Department of Electrical and Computer Engineering,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' University of Windsor,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Windsor,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Canada† Email: wuw02@pcl.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='ac.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='cn‡, {k2qu, sshen, wzhuang}@uwaterloo.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='ca⋆, yangpeng@hust.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='edu.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='cn∗, and ning.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='zhang@uwindsor.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='ca† Abstract—In this paper, we study a network slicing problem for edge-cloud orchestrated vehicular networks, in which the edge and cloud servers are orchestrated to process computation tasks for reducing network slicing cost while satisfying the quality of service requirements.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' We propose a two-stage network slicing framework, which consists of 1) network planning stage in a large timescale to perform slice deployment, edge resource provision- ing, and cloud resource provisioning, and 2) network operation stage in a small timescale to perform resource allocation and task dispatching.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Particularly, we formulate the network slicing problem as a two-timescale stochastic optimization problem to minimize the network slicing cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Since the problem is NP-hard due to coupled network planning and network operation stages, we develop a Two timescAle netWork Slicing (TAWS) algorithm by collaboratively integrating reinforcement learning (RL) and optimization methods, which can jointly make network planning and operation decisions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Specifically, by leveraging the timescale separation property of decisions, we decouple the problem into a large-timescale network planning subproblem and a small- timescale network operation subproblem.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The former is solved by an RL method, and the latter is solved by an optimization method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Simulation results based on real-world vehicle traffic traces show that the TAWS can effectively reduce the network slicing cost as compared to the benchmark scheme.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' I.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' INTRODUCTION To make autonomous driving from a mere vision to reality, future vehicular networks are required to support various Internet of vehicles (IoV) services, such as object detection, in-vehicle infotainment, and safety message dissemination [1].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Those IoV services have diversified quality of service (QoS) requirements in terms of delay, throughput, reliability, etc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Emerging network slicing is deemed as a de-facto solution to support diversified IoV services in vehicular networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Its ba- sic idea is to construct multiple isolated logical sub-networks (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', slices) for different services on top of the physical network, thereby facilitating flexible, agile, and cost-effective service provisioning.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Starting from the fifth-generation (5G) era, standardization efforts from the 3rd generation partnership project (3GPP) body, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Releases 15-17 [2]–[4], and proof- of-concept systems, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Orion [5], have fuelled the maturity of network slicing.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In the coming 6G era, advanced network slicing techniques are expected to play an increasingly impor- tant role [6]–[8].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In the literature, significant research efforts have been devoted to network slicing.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Ye et al.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' investigated a radio spectrum resource slicing problem, in which radio spectrum is sliced between macro base stations (MBSs) and small BSs (SBSs) [9].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' To achieve efficient resource allocation, a deep learning-based algorithm was proposed to jointly allo- cate radio spectrum and transmit power in a slicing-based network [10].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The previous work in [11] considered the resource provisioning problem and proposed a constrained learning algorithm to solve it.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' However, this work differs from the existing works in several important aspects.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Firstly, the existing works focus on utilizing resources on the network edge, low-cost cloud resources are yet to be considered.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As a remedy, a certain amount of computation tasks processed at the congested BSs can be dispatched to the remote cloud, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', task dispatching, such that system cost can be reduced.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Secondly, network slicing includes two stages: 1) network planning stage to provision network resources for slices in the large timescale, and 2) network operation stage to allocate the reserved resources to end users in the small timescale [3], [12].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The existing works mainly decouple network slicing into two independent stages, while the interaction between them is seldom considered.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Hence, designing a cost-effective network slicing scheme should take cloud resources and such interaction relationship into consideration.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Optimizing network slicing performance in dynamic vehic- ular networks faces the following challenges.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Firstly, network planning and operation decisions are nested.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Large-timescale network planning decisions (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', resource reservation), will condition small-timescale network operation decisions (e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', resource allocation).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Meanwhile, the performance achieved in the network operation stage will also affect the decision- making in the network planning stage, which is difficult to be solved by conventional optimization methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Secondly, since vehicle traffic density varies temporal-spatially, net- work planning decisions need to be made to optimize long- term performance in the slice lifecycle while accommodating such network dynamics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Deep reinforcement learning (RL) is considered as a plausible solution for long-term stochastic optimization.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In this paper, we first propose a cost-effective two-stage arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='03358v1 [cs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='NI] 31 Dec 2022 2 network slicing framework for edge-cloud orchestrated vehic- ular networks, by considering nested network planning and operation stages and effectively leveraging cloud resources.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' We then apply a network slicing cost model that accounts for slice deployment, resource provision, slice configuration adjustment, and QoS satisfaction.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Based on the model, we formulate the network slicing problem as a two-timescale stochastic optimization problem to minimize the network slicing cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Second, to solve the problem, we develop a learning-based algorithm, named Two timescAle netWork Slicing (TAWS).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The TAWS exploits the timescale separation structure of decision variables and decouples the problem into two subproblems in different timescales.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Regarding the large- timescale network planning subproblem, an RL algorithm is designed to minimize network slicing cost via optimizing slice deployment, edge resource provisioning, and cloud resource provisioning.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Regarding the small-timescale network operation subproblem, an optimization algorithm is designed to mini- mize average service delay via optimizing resource allocation and task dispatching.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In addition, the achieved service delay in the network operation stage is incorporated into the reward of the RL-based network planning algorithm, thereby capturing the interaction between two stages and enabling closed-loop network control.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Simulation results on real-world vehicle traces demonstrate that the proposed algorithm outperforms the benchmark scheme in terms of reducing network slicing cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The remainder of this paper is organized as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The system model and problem formulation are presented in Sec- tions II and III, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Section IV describes the proposed TAWS algorithm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Simulation results are given in Section V, along with the conclusion in Section VI.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' II.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' SYSTEM MODEL A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network Model As shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1, the network slicing framework consists of several components.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Physical network: A two-tier cellular network is deployed for serving on-road vehicles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The set of BSs is denoted by M, including the set of MBSs denoted by Mm and the set of SBSs denoted by Ms, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', M = Mm ∪Ms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Each BS has a circular coverage and is equipped with an edge server.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In the considered scenario, vehicles driving on the road generate computation tasks over time, which are offloaded to roadside BSs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Those tasks can be either processed at edge servers or dispatched to the remote cloud server via backbone networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Once completed, computation results are sent back to vehicles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network slice: Multiple network slices are constructed on top of the physical vehicular network.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' We consider K delay-sensitive services with differentiated delay requirements, denoted by set K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let θk, ∀k ∈ K denote the tolerable delay of service k.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For example, the tolerable delay of objective detection service is 100 ms [13], whereas the tolerable delay of in-vehicle infotainment can be up to several hundreds of milliseconds.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network controller: A hierarchical network control archi- tecture is adopted, including an upper-layer software defined Slice 1 Slice N Network Slices .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Physical Network SBS MBS Backbone Transmission Cloud Server Edge Server Switch Vehicle Computation Task Control Link SDN Controller Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network slicing for edge-cloud orchestrated vehicular networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' networking (SDN) controller that connects to all BSs, and lower-layer local network controllers located at BSs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Those controllers are in charge of network information collection and making network slicing decisions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Two-Stage Network Slicing Framework We present a two-stage network slicing framework for the considered network.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Firstly, a network planning stage operates in the large timescale (referred to as planning windows) to reserve resources at specific network nodes for the constructed slices.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The duration of each planning window is denoted by Tp.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' At each planning window, the SDN controller collects the average vehicle traffic density information in the considered area, based on which planning decisions are made.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Secondly, the network operation stage operates in the small timescale (referred to as operation slots) to dynamically allocate the reserved resources to vehicles according to real-time vehicles’ service requests and network conditions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The duration of each operation slot is denoted by To.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' A planning window includes multiple operation slots, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Tp/To ∈ Z+.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' At each operation slot, the local network controller at each BS collects real-time service requests and channel conditions of its associated vehi- cles, based on which operation decisions are made.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Decision structures in two stages are detailed respectively as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1) Network Planning Decision Structure: The planning window is indexed by w ∈ W = {1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', W}, and plan- ning decisions in planning window w include the following components.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Slice deployment decision, denoted by ow ∈ RMs×1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Each element is a binary variable, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', ow m ∈ {0, 1}, m ∈ Ms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (1) If SBS m is activated for slice deployment, we have ow m = 1;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' otherwise, ow m = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' When service demands are low, deploying slices at a selective subset of BSs can reduce network slicing cost as compared to deploying slices at all BSs while guaran- teeing slices’ service level agreements (SLAs).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' This is because running network slicing requires resource virtualization, which incurs network operating costs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For service continuity consid- eration, we assume that MBSs that cover the entire area are always activated.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Note that only when a BS is activated for slice deployment, edge resources at the BS can be provisioned.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Edge resource provisioning decision, including radio spec- trum and computing resource provisioning at all BSs for all slices, denoted by Bw ∈ RK×M and Cw ∈ RK×M, 3 respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The corresponding elements {bw k,m, cw k,m} ∈ Z+, ∀k ∈ K, m ∈ M, (2) represent the number of subcarriers and edge virtual machine (VM) instances provisioned for slice k at BS m, where Z+ denotes the set of positive integers.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='1 The bandwidth of a subcarrier is denoted by β, and the computing capability of an edge VM is denoted by Fe.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Due to the limitation of edge resources, the following capacity constraints are imposed: ow m � k∈K bw k,m ≤ Bm, ow m � k∈K cw k,m ≤ Cm, ∀m ∈ M, (3) where Bm and Cm represent the total numbers of subcarriers and VM instances at BS m, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Cloud resource provisioning decision, denoted by hw ∈ RK×1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Each element hw k ∈ Z+, ∀k ∈ K (4) denotes the number of cloud VM instances reserved for slice k.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The computing capability of a cloud VM is denoted by Fc.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 2) Network Operation Decision Structure: Let t ∈ T = {1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', T} denote the index of operation slots within a planning window.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' At operation slot t, the following decisions are determined for each slice k.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Radio spectrum allocation decision, denoted by yt k ∈ RN t×1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The reserved radio spectrum at each BS is allocated to active vehicles within BS’s coverage for task offloading.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Due to vehicle mobility, the number of vehicles varies across time.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let N t denote the set of active vehicles in operation slot t, and N t = |N t|.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For simplicity, each vehicle associates to the nearest BS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let N t m denote the set of active vehicles associated to BS m at operation slot t, and yt k,n ∈ R+ represents the fraction of radio spectrum allocated to vehicle n.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The total amount of the allocated bandwidth should not exceed the reserved number of subcarriers at the corresponding BS, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', � n∈N tm yt k,n ≤ bw k,m, ∀m ∈ Mw.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (5) Here, Mw denotes the set of the activated BSs in window w.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Task dispatching decision, denoted by xt k ∈ ZM w×1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The BS receives computation tasks uploaded from its as- sociated vehicles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The task arrivals of vehicles follow an arbitrary stochastic process.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let at k,n denote the number of the generated tasks of vehicle n in operation slot t, and the aggregated computation workload at BS m is given by At k,m = � n∈N tm at k,n.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Processing all tasks at BSs with limited computing resources may incur prohibitive high queuing delay, and hence a portion of computation tasks can be dispatched to the remote cloud via backbone networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let xt k,m represent the number of dispatched tasks from BS m in slice k, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', xt k,m ∈ {0, 1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', At k,m}, ∀m ∈ Mw.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (6) The operation decisions impact service delay at each oper- ation slot, which is analyzed in the following subsection.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1Memory resource is also allocated to the VM instance to enable task processing, which is matched to its allocated computing resource.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Service Delay Model The service delay includes task offloading delay and task processing delay at either the edge or the cloud.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For service k, the following delay analysis is adopted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Task offloading delay: The transmission rate of one sub- carrier from vehicle n to its associated BS is given by Rt n = β log2 � 1 + Pvgt n βNo+βI � , where Pv, gt n, No, and I repre- sent vehicle’s transmission power, instantaneous channel gain, noise spectrum density, and interference spectrum density, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' With the allocated radio spectrum yt k,nbw k,m, the task offloading delay of vehicle n is given by dt k,n,o = ξk yt k,nbw k,mRtn , ∀n ∈ N t m, where ξk (in bits) denotes the task data size of service k.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Edge processing delay: Given the task dispatching de- cision, At k,m − xt k,m tasks are processed at BS m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Let Qt k,m (in bits) denote the amount of the backlogged tasks at BS m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Taking task computation delay and queuing delay into account, edge processing delay at BS m is given by dt k,m,e = (Qt k,m+(At k,m−xt k,m+1)ξk/2)ηk cw k,mFe , ∀m ∈ Mw, where ηk (in cycles/bit) denotes task computation intensity of service k, and cw k,mFe is the computing capability of BS m with cw k,m provisioned edge VMs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The task backlog at BS m is updated by Qt+1 k,m = � Qt k,m + (At k,m − xt k,m)ξk − cw k,mFeTo/ηk �+ , where [x]+ = max {x, 0}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Cloud processing delay: For BS m, xt k,m tasks are dis- patched via backbone networks and then processed at the cloud, whose delay is given by dt k,m,c = dt r + ξkηk hw k Fc , where dt r denotes the round trip time in the backbone network.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The second term represents the task processing delay in the cloud.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Note that the queuing delay at the cloud is negligible as multi- core cloud servers can parallelly process different tasks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As such, the average delay for each computation task is given by Dt k(xt k, yt k) = � m∈Mw � n∈N tm dt k,n,o � m∈Mw N tm + � m∈Mw dt k,m,e � At k,m − xt k,m � + dt k,m,cxt k,m � m∈Mw At k,m .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (7) In the above equation, the first term represents the average task offloading delay for each task, and the second term represents the average task processing delay taking workload distribution between the edge and cloud servers into account.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' By averaging all operation slots, the average service delay is given by ¯Dw k = 1 T �T t=1 Dt k(xt k, yt k).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' D.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network Slicing Cost Model The following network slicing cost model is adopted for slicing performance evaluation, including several components.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Slice deployment cost: The cost is because running network slices at BSs incurs the overhead of resource virtualization, which is given by Φw d = qd � m∈Ms ow m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Here, qd denotes the unit cost of deploying network slices at a BS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Resource provisioning cost: The cost component character- izes resource provisioning cost of radio spectrum resources, 4 edge computing resources, and cloud computing resources.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For simplicity, we assume the unit costs of a subcarrier, an edge VM instance, and a cloud VM instance are the same, denoted by qr > 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The resource provisioning cost is given by Φw p = qr � k∈K � hw k + � m∈M � ow mbw k,m + ow mcw k,m �� .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Slice adjustment cost: The cost component characterizes the difference between two subsequent planning decisions, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', the cost for adjusting the amount of the reserved spectrum and computing resources.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For computing resources, VM instances can be resized via advanced virtualization techniques in prac- tical systems, e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='g.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Kubernetes [14].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Here, qs represents the unit price of adjusting a unit of reserved network resources.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Hence, the slice adjustment cost is given by Φw s =qs1 � ow−1 k,m = 1 ∧ ow k,m = 1 � � k∈K �� hw k − hw−1 k �+ + � m∈M �� bw k,m − bw−1 k,m �+ + � cw k,m − cw−1 k,m �+�� , (8) where 1 {·} is an indicator function and 1 � ow−1 k,m = 1 ∧ ow k,m = 1 � indicates that slice k is deployed in the previous and current planning windows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' SLA revenue: The cost component characterizes the benefit caused by QoS satisfaction, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', the achieved service delay of each slice.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The piece-wise SLA revenue function is denoted by Ωk (D) = � � � � � � � qb, if D < θ ′ k, qb � D−θ ′ k θk−θ′ k � , if θ ′ k ≤ D ≤ θk, −qp, if D > θk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (9) Here, qb > 0 is the highest unit revenue once a slice’s SLA is satisfied, and qp > 0 is the unit penalty once the slice’s SLA is violated.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Obviously, qp > qb for discouraging slice’s SLA violation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In addition, θ ′ k < θk represents the threshold achieving the highest revenue.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For simplicity, we set θ ′ k = θk/2 in the simulation.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The overall SLA revenue of all slices is given by Φw q = � k∈K Ωk � ¯Dw k � .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Taking all cost components into account, the overall network slicing cost in the entire slice lifecycle (i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', all planning win- dows) is given by Φ (ow, Bw, Cw, hw, {xt k, yt k}t∈T ,k∈K) = � w∈W � Φw d + Φw p + Φw s − Φw q � , which is adopted to evalu- ate network slicing performance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' III.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' PROBLEM FORMULATION The network slicing problem aims to minimize the network slicing cost via determining network planning decisions at each planning window and network operation decisions at each operation slot for each slice, which is formulated as: P0 : min {ow,Bw,Cw,hw}w∈W {xt k,yt k}t∈T ,k∈K,w∈W � w∈W Φ (ow, Bw, Cw, hw) s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (1), (2), (3), (4), (5), and (6).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (10a) In Problem P0, the network planning and operation decision making are coupled in two timescales, which should be jointly optimized.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' To address the challenge, we first decouple the problem into a large-timescale network planning subproblem and multiple small-timescale network operation subproblems.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Subproblem 1: Network planning subproblem is to mini- mize the network slicing cost across all the planning windows, which is formulated as: P1 : min {ow,Bw, Cw,hw}w∈W � w∈W Φ (ow, Bw, Cw, hw) s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (1), (2), (3), and (4).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (11a) Addressing the above subproblem requires network traffic information of all planning windows, which is difficult to be known a priori.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' To solve it, we leverage an RL method to design a network planning algorithm, which makes online decisions under spatial-temporally varying vehicle traffic.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Subproblem 2: Network operation subproblem is to sched- ule network resources of each slice to active vehicles with random task arrivals with the objective of minimizing average service delay, which is formulated as: P2 : min xt k,yt k Dt k(xt k, yt k) s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (5) and (6).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (12a) In the above subproblem, radio spectrum resource allocation and task dispatching decisions jointly impact the service delay performance.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' To solve the problem, we analyze the subproblem property and design an optimization algorithm to make real-time network operation decisions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' IV.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' LEARNING-BASED NETWORK SLICING ALGORITHM In this section, we solve two subproblems in Sections IV-A and IV-B, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Finally, we present the TWAS algo- rithm for jointly optimizing planning and operation decisions in Section IV-C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network Operation Optimization We can observe that the radio spectrum allocation de- cision only impacts offloading delay component, and the task dispatching decision only impacts the computation delay component.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Moreover, both decisions are independent in each BS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Hence, the radio spectrum allocation and task dispatching decisions can be optimized individually at each BS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1) Radio Spectrum Allocation Optimization: From (7), the radio spectrum allocation optimization problem is equivalent to minimizing the task offloading delay at each BS, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Pr m : min yt k � n∈N tm ξk yt k,nbw k,mRtn s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (5).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (13a) The objective function can be proved to be convex since its second-order derivative is positive.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In addition, the constraint is convex.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Hence, problem Pr m is a convex optimization problem.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Using the Karush-Kuhn-Tucker conditions [15], the optimal radio spectrum resource allocation decision is (yt k,n)⋆ = � 1/Rtn � i∈N tm � 1/Rt i , ∀n ∈ N t m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (14) 5 2) Task Dispatching Optimization: Similarly, from (7), task dispatching optimization is to minimize the task processing delay, which is formulated as: Pw m : min xt k,m dt k,m,e � At k,m − xt k,m � + dt k,m,cxt k,m s.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='t.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (6).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (15a) The above objective function can be rewritten as Ψ(xt k,m) = dt k,m,e � At k,m − xt k,m � + dt k,m,cxt k,m = ν1ξk 2 (xt k,m)2 + � νt 2 − ν1ν3 − ξkAk,mν1 2 � xt k,m + ν1νt 3At k,m.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (16) Here, ν1 = ηk cw k,mFe > 0, νt 2 = dt r + ηkξk hw k Fc , and ν3 = Qk,m + Ak,m+1 2 ξk.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Since the second-order derivative of the objective function ∂2Ψ(xt k,m)/∂2xt k,m = νt 1ξk > 0, the problem is a convex optimization problem [15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The optimal task dispatching decision is given by (xt k,m)⋆ = 2νt 2 + ξkν1Ak,m − 2ν1νt 3 2ν1ξk , ∀m ∈ Mw.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' (17) B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Network Planing Optimization The network planning problem is a stochastic optimization problem to minimize the network slicing cost, which can be transformed into a Markov decision process (MDP) [11].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The components of the MDP are defined as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1) Action, which is consistent with planning decisions, including slice deployment, radio spectrum and computing resource provisioning at BSs, and cloud computing resource provisioning, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Aw = {ow, Bw, Cw, hw}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The action dimension is Ms + 2KM + K.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 2) State, which includes average vehicle traffic density in the current planning window and the planning decisions in the previous window due to the switching cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The entire area is divided into J disjoint regions, and the average vehicle traffic density of all regions is denoted by Λw ∈ RJ×1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As such, the state is given by Sw = {Λw, ow−1, Bw−1, Cw−1, hw−1}.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The state dimension is 2KM + M + K + J.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 3) Reward, which is defined as the inverse of the net- work slicing cost in the current planning window, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', Rw (Sw, Aw) = −Φ (ow, Bw, Cw, hw) .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Note that minimiz- ing the network slicing cost is equivalent to maximizing the cumulative reward.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Upon state Sw, the learning agent takes action Aw, and the corresponding reward Rw (Sw, Aw) is obtained, along with the state evolves into new state Sw+1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' With the above setting, our goal is to obtain an optimal planning policy π⋆ ∈ Π which makes decisions based on the observed state, thereby maximizing the expected long-term cumulative reward.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As such, problem P2 can be formulated as the following MDP: P′ 2 : max π∈Π E � lim W →∞ W � w=1 (ϕ)wRw (Sw, Aw) |π � , (18a) where ϕ > 0 is the discount factor.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Since vehicle traffic density is continuous, the action-state space can be prohibitively large.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' To address this issue, an RL algorithm can be adopted.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Algorithm 1: TAWS algorithm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 1 for training episode =1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' do 2 for planning window w = 1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', W do 3 Generate planning decisions via the actor network;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 4 for each slice in parallel do 5 for operation slot t = 1, 2, .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='..' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', T do 6 for each BS in parallel do 7 Make radio spectrum allocation and task dispatching decisions by (14) and (17);' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 8 Calculate the instantaneous service delay;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 9 Measure the average service delay within the planning window;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 10 Collect vehicle traffic density of all regions, and observe reward Rw and new state Sw+1;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 11 Store transition {Sw, Aw, Rw, Sw+1} in the experience replay buffer;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 12 Sample a random minibatch of transitions from the experience replay buffer;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 13 Update the weights of neural networks;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Proposed TAWS Algorithm We present the TAWS algorithm to jointly solve the entire network slicing problem P0, collaboratively integrating RL and optimization methods.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The core idea of TAWS is to adopt an RL method for network planning decision making and an optimization method for network operation decision making.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The service delay performance is measured at the end of each planning window and then incorporated into the reward in the RL framework, such that the interaction between network planning and operation stages can be captured.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The TAWS algorithm is shown in Algorithm 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The RL method is based on the deep deterministic policy gradient (DDPG) algorithm [16], [17], which consists of four neural networks, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', actor evaluation network, critic evaluation network, actor target network, and critic target network.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' In the initialization phase, all neural networks and the environment are initialized.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The procedure of the TAWS is two-step: 1) Network slicing decisions are generated and executed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The actor network outputs the planning decisions Aw, which is clipped to feasible decision space.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The network operation decisions are generated via the optimization method, and the service delay performance is measured at the end of each planning window.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The reward Rw can be obtained and the new state can be observed Sw+1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The transition tuple {Sw, Aw, Rw, Sw+1} is stored in the experience replay buffer for updating neural networks;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' and 2) Neural networks are updated.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' A mini-batch of transitions are randomly sampled from the experience replay buffer to update the weights of neural networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Specifically, the critic network is updated by minimizing the loss function, and the actor network is updated via the policy gradient method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Then, actor and critic target networks are updated by slowly copying the weights of evaluation networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' V.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' SIMULATION RESULTS We evaluate the performance of the proposed algorithm on real-world vehicle traffic traces in urban vehicular networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' We consider a 1,000×1,000 m2 simulation area, which is 6 Table I SIMULATION PARAMETERS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Parameter Value Parameter Value No −174 dBm I −164 dBm Pv 27 dBm β 20 MHz dr 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='15 sec J 16 To 1 sec Tp 10 min Fc 100 GHz Fe 10 GHz Bm 10 Cm 10 ξ1, ξ2 {0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='6, 2} Mbit η1, η2 {1000, 200} cycles/bit θ1, θ2 {100, 200} ms θ ′ 1, θ ′ 2 {50, 100} ms 0 100 200 300 400 500 Training Episodes 1000 1500 2000 2500 3000 3500 4000 4500 Overall System Cost Five-Point Moving Average (a) Convergence 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='4 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='6 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='8 2 Task Arrival Rate (Packet/sec) 0 200 400 600 800 1000 1200 1400 1600 Overall System Cost Proposed Short Term Optimization (b) Network slicing cost Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Performance of the proposed TWAS algorithm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' covered by two SBSs and an MBS.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Each SBS has a coverage radius of 300 m, and the MBS located in the centre covers the entire simulation area.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The vehicle traffic density of the simulation area is measured by a unit of a small region of 250×250 m2, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=', J = 16.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' This dataset is collected by Didi Chuxing GAIA Initiative2 and contains vehicle traces in the second ring road in Xi’an collected from taxis that are equipped with GPS devices.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The periods of a planning window and an operation slot are set to 10 minutes and 1 second, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The period of the slice lifecycle is set to 4 hours, including 24 planning windows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The task arrivals of two services both follow Poisson processes with different task arrival rates.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' We construct two slices for supporting two types of delay-sensitive services.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' One is an object detect service whose service delay requirement is 100 ms, while the other is an in-vehicle infotainment service whose service delay requirement is 200 ms.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Regarding the TWAS algorithm, the neuron units in hidden layers of both actor and critic networks are set to 128 and 64.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Important simulation parameters are summarized in Table I.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 2(a), we present the overall network slicing cost with respect to training episodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' All simulation points are processed by a five-point moving average in order to highlight the convergence trend of the proposed algorithm.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' It can be seen that the proposed algorithm converges after 500 training episodes.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' As shown in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' 2(b), we compare the performance of the proposed algorithm and a short term optimization bench- mark.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The basic idea of the benchmark is to minimize the network slicing cost at each individual planning window.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Since planning decisions are discrete, a simple exhaustive searching method is adopted to obtain the optimal one-shot planning decisions.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Firstly, it can be seen that the proposed algorithm can greatly reduce the network slicing cost as compared to the benchmark.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Specifically, when the task arrival rate is 2 packets per second, the proposed algorithm can reduce the network slicing cost by 23%.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The reason is that the proposed algorithm takes the switching cost between two consequent planning windows into account, while the benchmark scheme does 2Didi Chuxing Dataset: https://gaia.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='didichuxing.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content='com.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' not.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Secondly, the overall network slicing cost increases with the increase of the task arrival rate, because more radio and computing resources are consumed in heavy traffic scenarios.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' VI.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' CONCLUSION In this paper, we have investigated a network slicing prob- lem in edge-cloud orchestrated vehicular networks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' A two- stage network slicing algorithm, named TWAS, has been proposed to jointly make network planning and operation decisions in an online fashion.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' The TAWS can adapt to network dynamics in different timescales, including spatial- temporally varying vehicle traffic density and random task arrivals.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Simulation results demonstrat that the TAWS can re- duce the network slicing cost as compared to the conventional scheme.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' For the future work, we aim to determine the optimal planning window size for minimizing the network slicing cost under vehicular network dynamics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' REFERENCES [1] C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Campolo, A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Molinaro, A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Iera, and F.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/IdE1T4oBgHgl3EQfrwV8/content/2301.03358v1.pdf'} +page_content=' Menichella, “5G network slicing for vehicle-to-everything services,” IEEE Wireless Commun.' metadata={'source': 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240–8501, Japan +(c) Institute for Theoretical Physics, ELTE E¨otv¨os Lor´and University, +Budapest H-1117, Hungary +(d) Department of Physics, LEPP, Cornell University, Ithaca, NY 14853, USA +(e) Radiation Science Center, High Energy Accelerator Research Organization (KEK), +Ibaraki 305–0801, Japan +(f) The Graduate University for Advanced Studies (SOKENDAI), +Hayama 240–0193, Japan +(g) Theory Center, High Energy Accelerator Research Organization (KEK), +1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan +(h) Center for High Energy Physics, Peking University, Beijing 100871, China +Abstract +Light dark matter particles may be produced in electron and positron beam dumps +of the International Linear Collider (ILC). We propose an experimental setup to +search for such events, the Beam-Dump eXperiment at the ILC (ILC-BDX). The +setup consists of a muon shield placed behind the beam dump, followed by a multi- +layer tracker and an electromagnetic calorimeter. The calorimeter can detect electron +recoils due to elastic scattering of dark matter particles produced in the dump, while +the tracker is sensitive to decays of excited dark-sector states into the dark matter +particle. We study the production, decay and scattering of sub-GeV dark matter +particles in this setup in several models with a dark photon mediator. Taking into +account beam-related backgrounds due to neutrinos produced in the beam dump as +well as the cosmic-ray background, we evaluate the sensitivity reach of the ILC-BDX +experiment. We find that the ILC-BDX will be able to probe interesting regions of +the model parameter space and, in many cases, reach well below the relic target. +arXiv:2301.03816v1 [hep-ph] 10 Jan 2023 + +Contents +1 +Introduction +1 +2 +Beam dump experiment +4 +3 +Expected backgrounds +7 +3.1 +Beam-induced background . . . . . . . . . . . . . . . . . . . . . . . . . . . +7 +3.2 +Cosmic-ray background . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +10 +4 +Examples of detectable DM models +11 +4.1 +Pseudo-Dirac DM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +12 +4.1.1 +Small mass-splitting +. . . . . . . . . . . . . . . . . . . . . . . . . . +13 +4.1.2 +Large mass-splitting +. . . . . . . . . . . . . . . . . . . . . . . . . . +15 +4.2 +Scalar elastic DM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +16 +4.3 +Scalar inelastic DM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +17 +4.4 +Majorana DM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +17 +4.5 +Existing constraints and projected sensitivities at other experiments . . . . +18 +5 +Summary +19 +A Dark photon production cross sections +21 +A.1 Pair-annihilation production . . . . . . . . . . . . . . . . . . . . . . . . . . +21 +A.2 Bremsstrahlung production +. . . . . . . . . . . . . . . . . . . . . . . . . . +22 +B DM-electron recoil cross sections +22 +C Neutrino-induced background +23 +C.1 Irreducible background . . . . . . . . . . . . . . . . . . . . . . . . . . . . . +24 +C.2 Reducible background +. . . . . . . . . . . . . . . . . . . . . . . . . . . . . +25 +1 +Introduction +The International Linear Collider (ILC) has been proposed as the next energy-frontier +facility in particle physics. The physics program of the ILC is well established [1–3]: it in- +cludes measurements of the Higgs boson couplings with unprecedented precision, searches +1 + +for new physics in rare Higgs decays and other channels, and precise top-mass determina- +tion, among other topics. Most studies of the physics potential of the ILC to date focus on +experiments with the detector situated at the main interaction point, where the electron +and positron beams collide head-on, yielding the maximum collision energy. +Recently, it was suggested that, in parallel with the experiments at the main interaction +point, the ILC can pursue a complementary physics program using its beam dumps [4–10]. +Particle collisions within the beam dumps occur in fixed-target kinematics, with typical +effective energies of O(10) GeV or below. At the same time, since every beam-electron +and beam-positron interacts with the dump, the beam-dump experiments can accumulate +enormous integrated luminosity. This makes the beam dump the ideal place to search for +relatively light new particles with very small couplings to the Standard Model (SM). +The new physics targeted by the beam-dump experimental program is very well mo- +tivated theoretically [11, 12]. Previously studied examples include visibly-decaying dark +photons, axion-like particles, vector bosons associated with gauged lepton flavor symme- +tries, and heavy neutral leptons. In all these cases, it was demonstrated that beam-dump +experiments at the ILC can probe model parameters well beyond the reach of the currently +available experiments and are competitive with proposed future dedicated facilities. +In this paper, we propose a new search for light dark matter using the ILC beam dumps. +It is well known that a stable particle with mass in the MeV–GeV range, interacting with +the SM via a dark photon mediator, is an attractive dark matter (DM) candidate. With +reasonable model parameters, its thermal relic density matches the observed DM abundance +and it is consistent with all astrophysical and experimental constraints. The DM particles +can be pair-produced at the ILC beam dump via virtual dark-photon exchanges or in decays +of dark photons. An electromagnetic calorimeter placed ∼ 100 m downstream of the beam +dump, behind a lead shield is designed to search for the DM by detecting elastic scattering +of the DM particles on the electrons in the detector material. In addition, in many models +such as inelastic DM [13], the DM particle is the lowest-lying state of a multiplet with small +mass splittings. A long-lived excited state in the same multiplet as the DM, produced at +the beam dump, may propagate through the lead shield and decay into the DM and charged +SM particles. The charged particles can then be detected by a tracker, providing a “visible +decay” signature of the DM. We will estimate the experimental reach in both electron-recoil +and visible-decay signal. +The proposed experimental setup is illustrated in Fig. 1. The concept of this experiment +is the same as the Beam-Dump eXperiment (BDX) proposed at JLab [14], and we, therefore, +call our proposal “ILC-BDX.” The advantage of the ILC, compared to the original BDX +proposal, is the higher beam energy as well as availability of both electron and positron +beams.#1 We also note that the experimental setup used here is essentially identical to +#1An additional advantage is the availability of polarized beams at the ILC. We will not explore conse- +2 + +ldec +Beam dump +Muon shield +lsh +ldump +rdet +Detector +z +Lead +Concrete +Water +e± +ldet +Decay volume (Multi-layer tracker) +rdec +e+ +e− +χ +χ +e± +Nucleus +e± +χ +χ +γ* +A′ +A′ +e− +e− +A′ * +χ +χ +A′ * +e− +e+ +χ2 +χ1 +Figure 1: The ILC-BDX experimental setup consists of the main beam dump, a muon +shield, a decay volume, and a detector. A multi-layer tracker is placed in the decay volume +to measure the charged tracks. The DM particles may be produced at electron and positron +beam dumps via pair-annihilation of positron on an atomic electron, or via bremsstrahlung. +The resulting DM particles can scatter off electrons in the detector and yield observable +electron-recoil events. In models where the DM particle is part of a multiplet, an excited +DM state may be produced. It can then decay into a lighter DM state and SM particles in +the decay volume, producing a visible signature in the tracker. +that proposed previously for searches for visible dark photons and axion-like particles. +(Detailed design of the detector may be different to optimize the sensitivity for various +searches, but this is outside the scope of this study.) The ILC-BDX can be pursued in +parallel to the previously discussed searches, adding to the rich physics program at the ILC +beam dumps. It is important to emphasize that this program can be pursued in parallel +with the exploration of the Higgs and electroweak physics at the main IP, and can broaden +the capabilities of the ILC to search for physics beyond the Standard Model (BSM) at a +modest additional cost. +The rest of the paper is organized as follows. In Section 2, we introduce the setup +of our proposed experiment for sub-GeV DM search at the ILC beam dumps, and list +formulae used to calculate the number of expected signal events. In Section 3, we discuss +the two types of background (BG) events that occur in this setup, i.e., beam-induced and +cosmic-ray backgrounds, and estimate the number of events expected from each BG. In +Section 4, we introduce five DM models used as benchmarks, i.e., pseudo-Dirac DM with +small and large mass-splitting, scalar elastic and inelastic DM, and Majorana DM. We +then present our estimates of the ILC-BDX sensitivity reach for each model. The main +findings of our analysis are summarized in Section 5. The Appendix contains the formulae +for cross sections of the relevant dark-photon production processes (Appendix A) and the +quences of polarization in this paper, but note that it can be particularly useful in characterizing the new +physics if a non-SM signal is observed. +3 + +DM-electron elastic scattering (Appendix B), as well as some details of our estimates of +neutrino-induced BG rates (Appendix C). +2 +Beam dump experiment +We adopt the same experimental setup as that of Ref. [9], which is illustrated in Fig. 1. +For both electron and positron beams, the ILC main beam dumps are planned as absorbers +consisting of water cylinders along the beam axes with the length of ldump = 11 m [15]. +The proposed setup consists of a muon shield with the length of lsh = 70 m made of lead, a +cylindrical decay volume with ldec = 50 m and radius of rdec = 3 m with a multi-layer tracker +installed, and a cylindrical detector with the radius of rdet = 2 m and the length of ldet = +0.64 m, behind either of the beam dumps. The multi-layer tracker is designed to detect +the visible-decay signal, while the cylindrical detector is assumed to be an electromagnetic +(EM) calorimeter made of CsI(Tl) scintillating crystals (n(det) +e− += 1.1 × 1024 cm−3) designed +to detect recoil electrons caused by incoming boosted DM particles (electron-recoil signals). +We focus on the 250 GeV ILC (ILC-250) with the beam energy of Ebeam = 125 GeV in +the lab frame, and the number of incident electrons and positrons into the beam dump of +Ne± = 4×1021/year [1,16–19]. As studied comprehensively in Refs. [5,6,9,20], this setup was +found very sensitive to long-lived BSM particles decaying into visible SM particles thanks +to its thick shield. We will see that, with the calorimeter as a recoil-electron detector, it is +also sensitive to DM particle production. +We study two types of signal events associated with different production mechanisms of +DM particles. If the DM particles are produced in the water beam dump by a BSM interac- +tion (such as dark photons), they are highly boosted and, passing through the muon shield, +scatter off electrons in the calorimeter. Such electron recoils, detected by the calorimeter, +are a typical signal of DM production. On the other hand, the DM particles may also be +produced in in-flight decays of heavier DM-sector particles if, for example, the DM is the +lowest-lying state of a multiplet. The heavier particle, which we denote by χ2, can pass +through the muon shield and then eventually decay into a DM particle χ1 and SM particles. +If the decay happens in the decay volume, charged tracks may be observed in the tracker. +This visible-decay signature is used as an additional signal of DM production. +In this work, we focus on five DM models with the dark photon mediator to provide a +benchmark study. They are pseudo-Dirac-fermion DM with small or large mass-splitting, +scalar elastic DM, scalar inelastic DM, and Majorana-fermion DM. The details of each +model are discussed in Section 4. Among the models, the pseudo-Dirac DM with small +mass-splitting, scalar DM, and Majorana DM can be observed as electron-recoil events. +Meanwhile, the pseudo-Dirac DM with large mass-splitting can produce visible-decay events +in addition to electron-recoil signature; specifically, due to the pseudo-Dirac nature, a +4 + +produced dark photon A′ decays mainly into χ2 ¯χ1 (or χ1 ¯χ2) and the heavier DM-sector +particle χ2 may decay visibly in the decay volume. +The number of signal events is schematically given by +Nsignal = Ne± × li × nj × σij→A′→DM × Acc, +(2.1) +where we consider a particle i in the shower interacting with a particle j in the material +of the beam dump to produce DM particles through an on-shell dark photon A′ as the +mediator. The track length le± of a shower electron and positron is provided in Ref. [6], +nj is the number density of j, and Acc denotes the detector acceptance discussed below. +More specifically#2, +N pair +signal = Ne± +� +dEe+ dle+ +dEe+ · ne− · σ(e+e− → A′) · Br(A′ → χ¯χ) · Acc, +(2.2) +N brems +signal = Ne± +� +i=e−,e+ +� +dEi +dli +dEi +· nN +� +dEA′ +� π +0 +dθA′ d2σ(iN → iA′N) +dEA′dθA′ +· Br(A′ → χ¯χ) · Acc +(2.3) +for pair-annihilation e+e− → A′ and bremsstrahlung e±N → e±A′N with a target nucleus +N, respectively. The cross sections σ on the right-hand side are provided in Appendix A. +Here θA′ is the emission angle of A′ with respect to the direction of the e± beam in the lab +frame. In all the models we consider, it is assumed that dark photons decay exclusively +into the DM-sector particles, i.e., Br(A′ → χ¯χ) = 1, with χ being a DM sector particle +(χ1 and/or χ2). This is justified since decays to SM final states are suppressed by a small +mixing parameter ϵ2. +Let us estimate the acceptance for each type of signal. For a visible-decay event to be +observed, the visible decay of χ2 must occur in the decay volume. Noting that A′ mainly +decays into a χ1-χ2 pair in the models we consider, we approximate the acceptance by +Acc(decay) = +� rdec/(ldump+lsh) +0 +dθχ +� ldec +0 +dzdPang +dθχ +· dPdec +dz +· Θ(rdec − rdec +⊥ ). +(2.4) +Here, we assume that the decay A′ → χ2 ¯χ1 (or χ1 ¯χ2) is immediate and χ2 exclusively +decays into electrons because of the small mass difference ∆ ≡ mχ2 − mχ1 < 2mµ. The lab +frame distribution of the χ2 emission angle θχ is approximated by#3 +dPang +dθχ += sin θχ · 1 +2 +� +mA′ +EA′ − pA′ cos θχ +�2 +, +(2.5) +#2In Ref. [9], this calculation scheme is referred to as the coarse-grained integration method. +#3The angular distribution in the CM-frame is given by dPang/d cos θCM +χ += 1/2 when the polarization of +the dark photon is averaged. +5 + +and dPdec/dz denotes the probability of χ2 to decay at the position z (the horizontal axis +in Fig. 1), i.e., +dPdec +dz += +1 +l(lab) +χ2 +exp +� +−ldump + lsh + z +l(lab) +χ2 +� +, +l(lab) +χ2 += pχ2 +mχ2 +1 +Γχ2 +(2.6) +with l(lab) +χ2 +denoting the lab frame decay length of χ2. The lab-frame momentum of χ2 is +approximated by pχ2 ≈ (EA′ + pA′ cos θχ)/2, where the mass-splitting is neglected. The +momentum of A′ is obtained by pA′ = +� +E2 +A′ − m2 +A′, and Γχ2 (mχ2) is the total decay width +(the mass) of χ2. The Heaviside function Θ in Eq. (2.4) governs the radial requirement on +the decay position of χ2, i.e., the radial deviation +rdec +⊥ +≈ +� +θ2 +e + θ2 +A′ + θ2 +χ · (ldump + lsh + z) +(2.7) +must be smaller than the radius rdec of the multi-layer tracker. In Eq. (2.7), θe is the angle +of the beam-oriented e± with respect to the beam axis, θA′ is the production angle of A′ +and is equal to 0 for pair-annihilation, and θχ is the emission angle of χ2 at the decay of +A′. We estimate θe by Monte Carlo simulations [6] and use the mean value +θe = 16 mrad · GeV/Ee±. +(2.8) +Similarly, we estimate the acceptance for electron-recoil signal as +Acc(recoil) = +� rdet/(ldump+lsh+ldec) +0 +dθχ +dPang +dθχ +· Θ(rdet − rrec +⊥ ) · Precoil, +(2.9) +where the radial deviation is approximately given by +rrec +⊥ = +� +θ2 +e + θ2 +A′ + θ2 +χ · (ldump + lsh + ldec), +(2.10) +and Precoil is the probability of electron recoil +Precoil = n(det) +e− ldet +� E+ +e +E− +e +dER +dσrecoil +dER +· Θ(ER − Emin) +(2.11) +given by the electron number density n(det) +e− +of the detector, the length ldet of detector, +kinematically allowed maximum (minimum) recoil energy E+ +e (E− +e ) given by Eq. (B.4), +and the effective recoil cross section approximated by +dσrecoil +dER +≈ dσ(χ1e− → χ2e−) +dER ++ dσ(χ2e− → χ1e−) +dER +exp +� +−ldump + lsh + ldec +l(lab) +χ2 +� +(2.12) +for models with χ2 and +dσrecoil +dER +≈ 2 × dσ(χe− → χe−) +dER +(2.13) +for the other models. The analytical formulae for the differential cross section of the DM- +electron scattering are shown in Appendix B. Here, the electron recoil energy ER is required +to be larger than the threshold Emin = 1 GeV to reduce BG events. +6 + +E d� +dE +[1/cm2/incident-e] +ACSHicbVBNT9 +tAEF2HAmn4aKDHXlaNkLgQbCiC3CIhJI6p1ABSHKL1e +kxW7NrW7hgRWeZn8SP4B0i9cIBzb1Vv3ThuxdeTVnr75 +s3M7gtSKQy67r1Tm/swv7BY/9hYWl5Z/dRcWz8xSaY5 +9HkiE30WMANSxNBHgRLOUg1MBRJOg8vDaf30CrQRSfwD +JykMFbuIRSQ4QyuNmr0jP9KM57mvFQ0LPx2L4t/lqKA +3Nw1fBtZwSb3tUuaqON/Z9hGuMRcxFyHEuAUF9XVpa4y +aLbftlqBviVeRFqnQGzUf/DhmbJzuGTGDopDnOmUXA +JRcPDKR2MLuAgaUxU2CGefnxgm5YJaRou2JkZbq84 +6cKWMmKrBOxXBsXtem4nu1QYbRwdD+L80QYj5bFGWSYk +KnKdJQaOAoJ5YwroV9K+VjZgNAm/WLYEqZpl0StAZ2 +f9WkY73P5OTnba3297ra6XpVOnXwhX8km8cg+6ZJj0 +iN9wskt+UkeyZNz5/xyfjt/ZtaU/V8Ji9Qq/0Fs+z +ig= +⌫e +AB+3i +cbZDLSgMxFIbP1Fut6pLN8EiuCozXqjdFdy4r +ODUQjuUTJpQ5PMkGSEMvQZ3Oranbj1YVz6JqbT +Qaz6Q+DjP+dwTv4w4Uwb1/1wSiura+sb5c3K1vb +O7l51/6Cj41QR6pOYx6obYk05k9Q3zHDaTRTFIu +T0Ppxcz+v3D1RpFs7M01oIPBIsogRbKzl92U6 +oINqza27udBf8AqoQaH2oPrZH8YkFVQawrHWvWZ +igwrwins0o/1TBZIJHtGdRYkF1kOW3ztCJdY 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fluxes at the end of the muon shield (left) and at the +EM calorimeter location (right). +3 +Expected backgrounds +Background (BG) events in this experiment are classified into two types: beam-induced +and beam-unrelated. The beam-induced BG events arise from the SM particles produced +by the injected beam at the main beam dump, while the beam-unrelated ones are mainly +due to cosmic-ray muons. +3.1 +Beam-induced background +The beam injected into the main beam dumps produces SM particles. In addition to light +particles such as pions, neutrons, and muons, because of the initial high-energy beams, +tau-leptons and heavy mesons (D, B, and Bc) are also produced by the shower photon +hitting nuclei [9]#4. Both light and heavy particle decays can produce neutrinos, which +pass through the muon shield and reach the detectors to generate the beam-induced BG +events for both the electron-recoil and visible-decay signals. +The neutrino fluxes are calculated with Monte Carlo simulation. We use PHITS 3.25 [21] +for production and transport of SM particles other than heavy mesons. For heavy meson +production, the differential production cross sections obtained by PYTHIA 8.3 [22] are +implemented into PHITS; see Ref. [9] for details. In Fig. 2, we show the neutrino fluxes per +#4Heavy meson production through the electromagnetic-shower photons is taken into account, which is +the dominant channel of heavy meson production in our setup. +7 + +electron injection at the end of the muon shield in the left panel and at the detector behind +the decay volume in the right panel. Tau-type neutrino fluxes are negligible, compared +to electron- and muon-types, because the beam energy is not large enough to produce a +considerable number of source particles such as tau-leptons and Ds. Due to the stopping +power of pions, many pions at rest are produced in the beam dump so that the neutrino flux +increases in the low-energy regions. The electron-type neutrinos in a high-energy regime +mainly arise from the decays of Ds. +A source of irreducible BG events for the electron-recoil searches are neutrino-electron +scattering,#5 +νe− → νe−, +¯νe− → ¯νe−, +(3.1) +where beam-originated neutrinos scatter on the atomic electrons in the detector material. +The recoil electrons produce electromagnetic showers in the calorimeter, which are difficult +to distinguish from the DM-electron recoil events. From the neutrino flux in the right panel +of Fig. 2, the number of neutrino-originated electron-recoil events is estimated to be around +1/year by imposing Emin = 1 GeV; see Appendix C for details. Neutrino-nucleon scattering +is another source of beam-induced BG for the electron-recoil search. We list the possible +processes below. Note that, in contrast to the neutrino-electron scattering, these processes +provide recoil nucleons in the calorimeter, making this component of the BG potentially +reducible depending on the design of the calorimeter. +• Quasi-elastic scattering — Neutrinos produced at the beam dump or in the muon +shield may interact with material in the calorimeter through the following quasi- +elastic scattering processes: +CC : +νℓn → ℓ−p, +¯νℓp → ℓ+n, +NC : +νp → νp, +¯νp → ¯νp, +νn → νn, +¯νn → ¯νn, +where CC (NC) denotes charged (neutral) current interaction. Among these, the +processes νen → e−p and ¯νep → e+n will produce an electromagnetic shower in the +calorimeter and thus potentially be misidentified as an electron-recoil signal. The +number of such events is conservatively estimated as 2×102/year using the simulated +neutrino flux (Fig. 2 right); see Appendix C for details. Other processes are without +electromagnetic showers, and thus we expect them to be distinguishable from the +signal events. +• Neutral pion production — In the detector, muon-type neutrinos may produce reso- +nant neutral pions (π0) decaying into photons: +CC : +νµn → µ−pπ0, +¯νµp → µ+nπ0, +#5The processes νµe− → µνe and ντe− → τνe do not contribute because the neutrino flux above the +threshold energy, Eν ≥ (m2 +µ − m2 +e)/2me ≃ 10.8 GeV and Eν ≥ (m2 +τ − m2 +e)/2me ≃ 3 TeV, is negligible. +8 + +NC : +νµp → νµpπ0, +¯νµp → ¯νµpπ0, +νµn → νµnπ0, +¯νµn → ¯νµnπ0. +The electromagnetic showers from the photons, which is accompanied by a recoil +nucleon, may be misidentified as electron recoils. As detailed in Appendix C, the +number of the single-π0 production is conservatively estimated as 2 × 103/year from +the flux (Fig. 2 right), but this BG may be reducible depending on the calorimeter +design by, for example, using the information on the radius of the electromagnetic +shower. +Since these BG events are due to misidentification of electron recoils, we postpone quanti- +tative studies to the detector-design stage. Instead, in our plots displaying the ILC-BDX +sensitivity of the electron-recoil searches, we show curves corresponding to 10, 100, and +1000 signal events in a 10-year ILC run. These choices illustrate a range of plausible sce- +narios for the degree to which beam-induced background from neutrino-nucleon scattering +can be controlled in practice. +Lastly, we consider the potential beam-induced BG events for the visible-decay signal. +The main source will be the following processes involving strange mesons: +CC : +νµn → µ−K0p, +νµn → µ−K0Σ+, +NC : +νµn → νµK0Λ0, +νµp → νµK0Σ+, +νµn → νµK0Σ0. +Neutral kaons produced at the end of the muon shield and the surrounding walls of the +decay volume can decay in the decay volume to yield charged tracks mimicking the visible- +decay signal. In Ref. [23] of the SHiP experiment, this class of neutrino-induced BG events +is evaluated using Geant4 [24]. We infer the number of charged tracks from neutral kaon +decays in the decay volume by comparing the number of neutrinos between the ILC beam +dump and the SHiP experiment. In the SHiP experiment with 2 × 1020 protons on target, +7 × 1017 neutrinos with momentum between 2 GeV and 100 GeV are expected, which +results in ∼ 104 pairs of charged tracks from neutral kaon decays; 99.4% of them are +rejected by using the topology of oppositely-charged two tracks thanks to the fact that +the BG-originated tracks generally do not point to the beam-target interaction points [23], +and around 60 events are expected to remain as the BG#6. At the ILC-BDX, the number +of neutrinos with momentum between 2 GeV and 100 GeV is estimated as 1.4 × 1017 per +10-year run (cf. Fig. 2 left), and the ILC-BDX expects 12 BG events with pairs of charged +tracks per 10-year run. Consequently, in the following analysis of ILC-BDX visible-decay +searches, we expect 12 BG events and show the expected exclusion limit sensitivity with +95% confidence-level (C.L.), which corresponds to 7.4 signal events in a 10-year run. +#6The SHiP experiment has a veto system to reduce the BG further. We do not discuss it because the +reduction strongly depends on the detector setup. +9 + +10�2 +10�1 +100 +101 +102 +103 +ACZnicbZHLSgMxFIYzUy+13kZFXLgJF +sGNZdKqtSsLblxWsBdoa8mkaRuazAxJRi +jDPJWP4sqtK1/Bnem0Xqr9IfDznXM4hz9e +yJnSrvtq2ZmV1bX17EZuc2t7Z9fZ2+oIJ +KE1knA9nysKc+bSumea0FUqKhcdp0xv +fTuvNJyoVC/wHPQlpV+ChzwaMYG1QzxHIf +YzPi0lnpEJMaIxQqJNcCtES6P6wqy+GlrD +iElZKcj0n7xbcVPC/QXOTv3kupar1nLdOP +yCRoL4mHCvVRm6ouzGWmhFOk1wnUtSsGe +MhbRvrY0FVN05jSeCpIX04CKR5voYp/T0R +Y6HURHimU2A9Un9rU7is1o704LobMz+MNP +XJbNEg4lAHcJox7DNJieYTYzCRzNwKyQh +LTLT5iYUtnpiHUkFZ6Z8MTcV9B1Ko1hAp +cLlvZuvFsBMWXAMTsAZQKAMquAO1EAdEPA +CPizbyljv9o59aB/NWm1rPnMAFmTDTwgw +uZo= +d�/dlog10E [1/cm2/s] +ACnicbZBNS8MwHMbT+TbnW9Wjl+ +gqiIetncrcbSCxwluDrpa0jTbwtKmJK +kwys5e/CpePCji1U/gzW9j1xXx7YHAj+f +5/0nyeBGjUpnmh1aYm19YXCoul1ZW19Y3 +9M2tjuSxwKSNOeOi6yFJGA1JW1HFSDcS +BAUeI9fe6GyaX98SISkPr9Q4Ik6ABiHtU +4xUarn6rm/0oiE1qj7jA8NLHNybkDbq +uLAuKkZVem4etmsmJngX7ByKINcLVd/7/ +kcxwEJFWZIStsyI+UkSCiKGZmUerEkEc +IjNCB2iEKiHS7CsTuJ86PuxzkZ5Qwcz +9vpGgQMpx4KWTAVJD+Tubmv9ldqz6p05 +CwyhWJMSzi/oxg4rDaS/Qp4JgxcYpICxo ++laIh0grNL2SlkJjUxwBvXjHBrWVwmdW +sU6qpxc1srNw7yOItgBe+AWKAOmuACt +EAbYHAHsATeNbutUftRXudjRa0fGcb/J +D29gko1ZhX +Kinetic energy [GeV] +AB/XicbZBLSwMxFIUzPmt91cfOTbAI4qLMVKV2V3Ch4K +aCfUA7lEx624ZmMkOSEcah+FfcuFDErf/Dnf/GdDqIrwOBj3PuTcLxQs6Utu0Pa25 ++YXFpObeSX1b39gsbG03VRBJCg0a8EC2PaKAMwENzTSHdiB+B6Hljc+n+atW5CK +BeJGxyG4PhkKNmCUaGP1CrtXZlEzikGAHMa4cwFNt1co2iU7Ff4LTgZFlKneK7x3+ +wGNfBCacqJUx7FD7SZEmps5TPLdSEFI6JgMoWNQEB+Um6S/n+AD4/TxIJDmCI1T9/t +GQnylYt8zkz7RI/U7m5r/Z1ID87chIkw0iDo7KFBxLEO8LQK3GcSqOaxAUIlm7ZA +R0QSqk1h+bSEaio8g8pJBlXnq4RmueQcl06vy8XaUVZHDu2hfXSIHFRBNXSJ6qiBK +LpD+gJPVv31qP1Yr3ORuesbGcH/ZD19gn01ZU7 +10�1 +10�2 +10�3 +10�4 +10�5 +10�6 +10�7 +A +ACX3icbZFLa+MwFIVlT9t0pdnZjV0IxoKp +dBgp49Md4XZzLKFpi3EaZCVG0etLBvpuhCM/ ++TsBrpPxklNqavA4KPcx8SR1EmhUHf/+e4 +X1ZW1rX9sbm1vbO9637zcmzTWHAU9lqu8i +ZkAKBQMUKOEu08CSMJt9Ph7Ub9Am1Eq5 +xnsEoYbESU8EZWmvsPYUG7JCKcVaEDymWRT/ +Dsh1GEAtVMClidVi2A/+OArKMKyo19BxQy +cNnTZ01lDfrgQ1aRaOvY7f9ZeiHyGoUNqXY +69v+Ek5XkCrlkxgwDP8NRwTQKLsFuzw1kj +D+yGIYWFUvAjIplPiXdt86ETlNtj0K6dF9PF +CwxZp5EtjNhODPvawvzs9owx+mvUSFUliMo +Xl0zSXFlC7CphOhgaOcW2BcC/tWymdM472 +S6oQzpeiFfRPajgPmhBuet3guHt61etcdOs +41sku2SMHJCB9ckH+kEsyIJw8O6z4Ww6L27 +L3Xa9qtV16pkf5I3cn/8ByQixVw= +Cosmic muon flux +AB+XicbZBLS8NAFIUnPmt9RV26GS +yCuChJVWp3hW5cVrAPaEOZTCft0HmEeR +RL6D9x40IRt/4Td/4b0zSIrwMDH+fcy1x +OGDOqjed9OCura+sbm4Wt4vbO7t6+e3DY +1tIqTFpYMqm6IdKEUFahpGurEiIeM +dMJY5F3pkRpKsWdmcUk4GgkaEQxMqk1c +N2G1JxiyK0UMGL2fuCWvLKXCf4FP4cSy +NUcuO/9ocSWE2EwQ1r3fC82QYKUoZiReb +FvNYkRnqAR6aUoECc6SL5/A0dYwki +p9wsDM/b6RIK71jIfpJEdmrH9nC/O/rGd +NdB0kVMTWEIGXH0WQSPhogY4pIpgw2Y +pIKxoeivEY6QNmlZxayEWia4hOplDjX/ +q4R2pexflK9uK6X6eV5HARyDE3AGfFAFd +XADmqAFMJiCB/AEnp3EeXRenNfl6IqT7 +xyBH3LePgF6rpPk +at sea level +AB83icbZBLS8NAFIVv6qvWV9Wlm8EiIuSVKV2V3Djso +K1hTaUyfSmHTqZhJlJoYT+DTcuFHrn3HnvzFNg/g6MPBxzr3M5XiR4NrY9odVWFl +dW98obpa2tnd298r7B/c6jBXDNgtFqLoe1Si4xLbhRmA3UkgDT2DHm1wv8s4Uleah +vDOzCN2AjiT3OaMmtfrUEI2UCJyiGJQrdtXORP6Ck0MFcrUG5f+MGRxgNIwQbXuO +XZk3IQqw5nAeakfa4wom9AR9lKUNEDtJtnNc3KSOkPihyp90pDM/b6R0EDrWeClkwE +1Y/07W5j/Zb3Y+FduwmUG5Rs+ZEfC2JCsiADLlCZsQsBcoUT28lbEwVZSatqZSV +0MhElC/yKHhfJVwX6s659XL21qleZbXUYQjOIZTcKAOTbiBFrSBQP8ATPVmw9W +i/W63K0YOU7h/BD1tsnwUmR1Q= +at beam dump area +AB+nicbVDLSsNAFJ34rPWV6tLNYBHERUmqUrsruHFZwT +6gDWUymbRDJ5Mwc6OU2k9x40IRt36JO/GaRrE14GBw3kwl+MngmtwnA9raXldW2 +9sFHc3Nre2bVLe20dp4qyFo1FrLo+0UxwyVrAQbBuohiJfME6/vhy7ndumdI8ljcw +SZgXkaHkIacEjDSwSwSwb/I4SKME1Md2GWn4mTAf4mbkzLK0RzY7/0gpmnEJFBt +O65TgLelCjgVLBZsZ9qlhA6JkPWM1SiGlvmp0+w0dGCXAYK/Mk4Ez93piSOtJ5Jt +kRGCkf3tz8T+vl0J4U25TFJgki4+ClOBIcbzHXDAFaMgJoYQqri5FdMRUYSCWauY +jVDPgBekdpaTuvs1QrtacU8r59fVcuMkn6OADtAhOkYuqEGukJN1EIU3aEH9ISer +Xvr0XqxXhfRJSv7KMfsN4+AZ5Sk+s= +Figure 3: The cosmic-muon fluxes at sea level (dashed line) and the beam dump area (black +band). The uncertainly in the latter flux is due to the indeterminate density of subsurface +materials in the Kitakami Mountains at the experimental site. The subsurface materials +are assumed to be soil and granite, with an average density of 2.0 to 2.4 g/cm3. +3.2 +Cosmic-ray background +The beam-unrelated BG is mainly due to cosmic rays. Figure 3 shows the fluxes of cosmic +muons at sea level and the beam dump area evaluated by EXPACS [25–27] and PHITS [21]#7. +The kinetic energy loss of the cosmic muon from the ground surface to a depth of ∼120 +meters below the ground surface is estimated as ρ × ⟨dE/dx⟩ × 120 m ∼ 50 GeV with the +mass density of the ground ρ ∼ 2.2 g/cm3 and the stopping power of muon ⟨dE/dx⟩ ∼ +2 MeV · cm2/g. Due to this large energy loss, the muon flux at the beam dump area is 200 +times smaller than that on the ground. Then, the number of the cosmic-muon BG events +for 10 years is estimated as +N BG +cos ∼ O(10) · ϵveto. +(3.2) +This estimate arises from the following factors: +O(10) ∼ 10 year +(operation time) +× 10−4 muon/cm2/s +(cosmic muon flux at beam dump area) +× 1002 cm2 +(detector area from top view) +× 10−4/muon +(hit rate per cosmic muon) +× 1312 × 5 bunch/s +(bunch number per second) +× 100 ns/bunch. +(time window per bunch) +#7Muon-induced neutrons avoid the muon veto and may become a BG event. Evaluation of this effect is +left for future work. +10 + +Time +1312 bunches +1312 bunches +0.73 ms +200 ms +100 ns +~600 ns +time window +Figure 4: A schematic picture of the ILC beam [17,18]. The number of bunches per pulse +is 1312, the beam pulse length is 0.73 ms, the pulse repetition rate is 1/200 ms−1 = 5 Hz, +and the bunch spacing is ∼600 ns. The number of the beam-unrelated BG events can be +reduced by imposing 100 ns time window per bunch. +The hit rate is the probability that a cosmic-ray muon on an iron block of size 10 cm × +10 cm×10 cm will cause an energy deposition above the threshold value of 1 GeV, which is +evaluated in the Monte Carlo simulation. Detectors with smaller cell sizes are sufficiently +realistic, and the above estimation of the hit rate is conservative. +The time structure +of the ILC bunches [17, 18] is represented in Fig. 4. +The factor ϵveto is the reduction +factor by the cosmic-muon veto, which is typically much smaller than 10%. +The deep +underground location of the detector and coincidence time window significantly reduce the +beam-unrelated BG. Consequently, we will neglect the cosmic-muon BG in the rest of this +study. +4 +Examples of detectable DM models +We evaluate the sensitivity of the ILC electron and positron beam dump experiments to DM +particles using the formulae in Section 2. Taking into account the beam-induced BG events +coming from the SM neutrinos, we show the prospects of the ILC-BDX for electron-recoil +and visible-decay searches. For the electron-recoil searches, we illustrate parameter spaces +in which more than 10, 102, and 103 signal events are expected at a 10-year ILC-BDX run. +For the visible-decay searches, regions with more than 7.4 signal events in a 10-year run are +shown, which corresponds to a 95% C.L. exclusion. Throughout this work, we assume that +the beam-unrelated BG events are negligible, as indicated by the estimates in Section 3. +As benchmark models, we consider a class of DM models in which the DM field is +charged under a new “dark” gauge symmetry, U(1)D. +At low energy, where U(1)D is +spontaneously broken and the dark photon A′ acquires a mass mA′, the relevant terms of +11 + +the Lagrangian are given by +L ⊃ −1 +4FµνF µν − 1 +4F ′ +µνF ′µν + 1 +2m2 +A′A′ +µA′µ − ϵ +2F ′ +µνF µν − gDA′ +µJµ +χ − eAµJµ +EM , +(4.1) +where Fµν (F ′ +µν) is the photon (dark photon) field strength, gD is the U(1)D gauge coupling, +Jµ +χ (Jµ +EM) is the DM (electromagnetic-matter) current, and ϵ parametrizes the kinetic mixing +between the photon and the dark photon. By the redefinition Aµ → Aµ − ϵA′ +µ, the gauge +kinetic terms become canonical, and the interaction terms read +Lint = −gDA′ +µJµ +χ + ϵeA′ +µJµ +EM − eAµJµ +EM . +(4.2) +We consider five models for the nature of the DM: pseudo-Dirac-fermion DM with small +or large mass-splitting, scalar elastic DM, scalar inelastic DM, and Majorana-fermion DM. +The DM current Jµ +χ for each of these models is listed below, and the recoil profiles for +χe → χe scattering in the lab frame are summarized in Appendix B. +The DM models used in this study have four or five free parameters: the dark photon +mass mA′, the DM mass mχ1, the dark fine structure constant αD ≡ g2 +D/(4π), the kinetic +mixing parameter ϵ, and the mass difference ∆ = mχ2 − mχ1 of DMs if χ2 is present. The +DM particles remain in chemical equilibrium with the SM plasma in the early universe +before freezing out. The DM relic density is determined by the cross section of the pair- +annihilation process DM + DM ↔ SM + SM. For mχ ≪ mA′, the annihilation cross section +for these models can be parametrized as σv ∝ y/m2 +χ with y ≡ ϵ2αD(mχ/mA′)4. The cross +section for which the relic density matches the observed value defines the “relic target” in the +(mχ, y) space. Following the common practice, we will use this two-dimensional parameter +space to illustrate the sensitivity of the ILC beam dump searches. Note however that the +signal event rates at the ILC-BDX do not depend exclusively on these two parameters and +thus further assumptions are necessary to represent the reach on the (mχ, y) plane. These +assumptions will be specified in the captions of each of our reach plots. +4.1 +Pseudo-Dirac DM +Pseudo-Dirac inelastic DM#8 is described by a pair of two-component Weyl fermions (η, ξ) +that have opposite unit charge under U(1)D. Both a U(1)D-conserving Dirac mass mD and +a U(1)D-breaking Majorana mass mM are present in the low-energy theory, since the U(1)D +symmetry is spontaneously broken. Namely, the Lagrangian has the mass terms +−L ⊃ mDηξ + 1 +2mM(η2 + ξ2) + H.c. +(4.3) +#8If the DM χ is a Dirac fermion, the DM current is given by Jµ +χ ∝ ¯χγµχ, and it annihilates to SM +in s-wave two-to-two processes. Constraints from the cosmic microwave background (CMB) power in- +jection have ruled out s-wave two-to-two annihilating DM lighter than O(10) GeV as the thermal DM +candidate [28]. This motivates pseudo-Dirac DM as the simplest viable model of sub-GeV fermionic DM. +12 + +Here and below, we assume mD ≫ mM > 0. The mass eigenstates are then given by +χ1 = +i +√ +2(η − ξ), +χ2 = 1 +√ +2(η + ξ) +(4.4) +with masses mχ1,2 = mD ∓ mM, and the DM current becomes off-diagonal: +Jµ +χ = i¯χ2γµχ1 + H.c. +(4.5) +The ILC-BDX search strategy depends on the mass difference ∆ ≡ mχ2 − mχ1 = 2mM. +For ∆ > 2me (large mass-splitting), the heavier DM particle χ2 can decay into χ1e−e+ +with the partial decay width [29,30] +Γ(χ2 → χ1e−e+) ≃ 4ϵ2ααD∆5 +15πm4 +A′ +, +(4.6) +which results in a visible-decay signal. +Otherwise, if ∆ < 2me (small mass-splitting), +χ2 does not decay inside the apparatus because of the small width of the main decay +channel χ2 → χ1 + 3γ. This region of parameter space is accessible only by searches for +the electron-recoil signal. +Figure 5 summarizes our results for the small mass-splitting case, where we take the limit +∆ ≃ 0 and fix αD = 0.5 and mA′ = 3mχ. The three red solid lines show the sensitivity of the +ILC-BDX recoil-electron search with √s = 250 GeV. The lines correspond to 10, 102, and +103 signal events with 10-year statistics.#9 The three lines illustrate the range of plausible +scenarios for the level of reducible beam-induced backgrounds affecting the search, see +Section 3. The shaded regions are excluded by past experiments listed in Section 4.5, and +the solid black lines are the relic target for pseudo-Dirac DM. +Figure 6 shows the result for larger mass-splitting, where we fix ∆ = 0.1mχ1 as well +as αD = 0.1 and mA′ = 3mχ1. +Consequently, the visible-decay signal is expected for +mχ1 ≳ 1 MeV. It is noteworthy that the search for visible decays of χ2 provides a unique +sensitivity for this model, well beyond that achievable at proposed dedicated future facilities +such as LDMX. This strongly motivates the inclusion of a multi-layer tracker in the decay +volume (see Fig. 1) as a key component of the ILC-BDX design. +Below, we discuss the physics that determines the structure of the reach curves in Figs. 5 +and 6. +4.1.1 +Small mass-splitting: ∆ < 2me +Both pair-annihilation and bremsstrahlung are included as the source of signal events, +where on-shell dark photons are produced and decay into a χ2-χ1 pair, and either χ2 or χ1 +is detected as electron recoil. +#9We also checked that the visible decay signals coming from Z decays at the Giga-Z program [35] of +the ILC are not significant for mχ ≲ 1 GeV. +13 + +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +BaBar +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +BDX (recoil) +(a) electron beam dump +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +BaBar +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +BDX (recoil) +(b) positron beam dump +Figure 5: Projected sensitivity reach of a 10-year ILC-250 run in the pseudo-Dirac DM +model with small mass-splitting, ∆ ≪ min(me, mχ1). It is assumed that αD = 0.5 and +mA′ = 3mχ. On each panel, the three red solid lines show the sensitivity of the ILC-BDX +recoil-electron search, corresponding to 10, 102, and 103 signal events. The black solid line +shows DM relic targets [31]. The shaded grey region is excluded by the past experiments; +see Section 4.5. The dashed lines show the sensitivity of the BDX recoil-electron search +(purple) [29], LDMX (blue) [31], and Belle II experiment (green) [12,32]. +• Pair-annihilation (recoil-electron) — The DM with mass less than ≃ 10−2 GeV cannot +be detected because of the threshold Emin = 1 GeV. This is because decays of the +dark photon with mass less than √2meEmin cannot contribute to signal events since +the energy of the produced dark photon is Elab +A′ ≃ Ee+ ≃ m2 +A′/2me. Also, the DM +with mass larger than ≃ 10−1 GeV cannot be produced from decays of the dark +photon because the dark photon mass cannot exceed √2meEbeam. In the positron +beam dump for the DM mass of √2meEbeam/3, primary positron beam production +dominates, and a peak structure arises. +• Bremsstrahlung (recoil-electron) — For the DM mass smaller than ∼ 10−2 GeV, the +number of the recoil-electron events is suppressed by the threshold Emin = 1 GeV. +Since the expected decay angle of the dark photon is (π/2) · (mA′/EA′), the dark +photon energy has to satisfy mA′ · (π/2) · (ldump + lsh + ldec)/rdet ≲ EA′ to obtain +sufficient angular acceptance. However, the minimum energy of the dark photon is +EA′ ∼ Emin = 1 GeV because of the threshold, and the signal events from the DM +with mass smaller than ∼ 10−2 GeV are suppressed even if the angular acceptance +14 + +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ1 [GeV] +y = ϵ2αD(mχ1/mA')4 +Belle II (extrapolated) +LDMX +BDX(decay) +Relic Target +ILC-250 10-year +103 +102 +10 +ILC (recoil) +ILC (decay) +(a) electron beam dump +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ1 [GeV] +y = ϵ2αD(mχ1/mA')4 +Belle II (extrapolated) +LDMX +Relic Target +ILC-250 10-year +103 +102 +10 +ILC (recoil) +ILC (decay) +BDX(decay) +(b) positron beam dump +Figure 6: Projected sensitivity reach of a 10-year ILC-250 run in the pseudo-Dirac DM +model with a large mass-splitting, ∆ = 0.1mχ1. +It is assumed that αD = 0.1 and +mA′ = 3mχ1. The notation is similar to Fig. 5; in addition, dot-dashed lines show the +sensitivity of the ILC-BDX decay-signal search (95% C.L. exclusion). +Also shown are +expected sensitivities of the BDX visible-decay search (purple-dashed lines) [14, 29], the +LDMX (blue) [33], and Belle II (green) [34]. +holds. For the DM with mass larger than 0.1 GeV, the angular acceptance becomes +worse, and the sensitivity rapidly decreases. +4.1.2 +Large mass-splitting: ∆ > 2me +The new feature in this case is the availability of the visible-decay signal. Here, we discuss +the sensitivity reach for this channel, highlighting each of the DM decay processes. The +results of the electron recoil searches are similar to the case of the small mass-splitting. +• Pair-annihilation (visible-decay) — For ∆ = 0.1mχ1, the heavier DM with the mass +smaller than ≃ 10−2 GeV cannot decay, and the visible-decay signals do not arise. +Similar to the recoil-electron search, the DM with mass larger than 10−1 GeV can- +not be produced because the dark photon mass cannot exceed √2meEbeam. In the +positron beam dump experiment, for mχ1 = √2meEbeam/3, the peak structure arises +due to the primary positron beam. +• Bremsstrahlung (visible-decay) — Similar to the pair-annihilation process, for ∆ = +15 + +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +SuperCDMS +SNOLAB +SENSEI +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +(a) electron beam dump +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +SuperCDMS +SNOLAB +SENSEI +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +(b) positron beam dump +Figure 7: The results for the scalar elastic DM. It is assumed that αD = 0.5 and mA′ = +3mχ. The notation is the same as in Fig. 5; in addition, the gray lines show the expected +sensitivities of SENSEI [32] and SuperCDMS [12,32]. +0.1mχ1, the heavier DM with the mass smaller than ≃ 10−2 GeV cannot decay and +produce the visible-decay signals. For 10−1 GeV ≲ mχ, the number of signal events +rapidly decreases because the angular acceptance becomes worse. +4.2 +Scalar elastic DM +The model with a scalar elastic DM is described by a complex scalar field χ that is SM- +singlet with unit U(1)D-charge. It is safe from CMB bounds since the DM annihilation +is in p-wave and thus with a suppressed rate. The DM current, originating in the kinetic +term |Dµχ|2, is given by +Jµ +χ = i(χ∗∂µχ − χ∂µχ∗) . +(4.7) +The analysis results are shown in Fig. 7 with the same notation as in Fig. 5. For the non- +relativistic DM-SM fermion elastic scattering cross section, there is no velocity suppression, +and the constraints from direct detection experiments are significant. +16 + +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +(a) electron beam dump +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +ILC (recoil) +(b) positron beam dump +Figure 8: The results for the scalar inelastic DM. The prescription αD = 0.5, mA′ = 3mχ +is adopted. Notation is the same as in Fig. 5. +4.3 +Scalar inelastic DM +The scalar inelastic DM is characterized by the dark photon current +Jµ +χ = χ1∂µχ2 − χ2∂µχ1 +(4.8) +involving two real scalar fields χ1,2 that are quasi-degenerate but have non-zero mass dif- +ference ∆ = mχ2 − mχ1 > 0 after the spontaneous symmetry breaking of U(1)D.#10 We +focus only on the small mass-splitting case since the large mass-splitting case of the scalar +inelastic DM is similar to that of the pseudo-Dirac inelastic DM. The results of our analysis +are shown in Fig. 8, with the same notation as in Fig. 5. +4.4 +Majorana DM +For a Majorana fermion χ, the DM current can be an axial-vector as follows: +Jµ +χ = 1 +2 ¯χγµγ5χ. +(4.9) +#10The mass difference is realized by terms such as χ2H2 after the electroweak (and U(1)D) symmetry +breaking, where χ is a complex scalar field yielding χ1,2, and H is the Higgs doublet [13]. +See, e.g., +Refs. [36–39] for models realizing scalar inelastic DM. +17 + +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +SENSEI +SuperCDMS +SNOLAB +ILC (recoil) +(a) electron beam dump +10-3 +10-2 +10-1 +100 +10-16 +10-15 +10-14 +10-13 +10-12 +10-11 +10-10 +10-9 +10-8 +10-7 +mχ [GeV] +y = ϵ2αD(mχ/mA')4 +Relic Target +Belle II (extrapolated) +LDMX +ILC-250 10-year +103 +102 +10 +SENSEI +SuperCDMS +SNOLAB +ILC (recoil) +(b) positron beam dump +Figure 9: The results for the Majorana DM. The prescription αD = 0.5, mA′ = 3mχ is +adopted. Notation is the same as in Fig. 7. +Similar to the scalar DM, the pair-annihilation rate of the DM into SM particles is sup- +pressed by the DM velocity, and a sub-GeV Majorana fermion DM is safe from the CMB +constraints. The results of our analysis for the Majorana DM are shown in Fig. 9, with the +same notation as in the scalar elastic DM case (Fig. 7). +4.5 +Existing constraints and projected sensitivities at other ex- +periments +Searches for sub-GeV DM are pursued by accelerator-based experiments and direct detec- +tion experiments. In the accelerator-based experiments, the DM particles may be produced +by beam-beam or beam-target collisions, and the searches are performed either by detect- +ing their scattering off of the SM particles in the detectors, the visible decays of the excited +DM states, or the missing energy/momentum events. In the direct detection experiments, +the DM particles from the halo are searched for by detecting their scattering off of the SM +particles in the detectors. We list the existing constraints included in Figs. 5-9 as follows: +• E137 electron beam dump experiment — The light DM may be produced at the SLAC +electron beam dump by injection of 20 GeV electron beams [40]. The produced DM +particles may be detected by their scattering on electrons in the aluminum and plastic +scintillator 400 m downstream from the beam dump. The visible decays of the heavier +18 + +dark sector particles are also detectable at the scintillator [29]. +• LSND proton beam dump experiment — The light DM may also be produced in the +Los Alamos LSND proton beam dump experiment by injection of proton beams with +kinetic energy of 800 MeV [29,32,33,41]. The DM particles are produced dominantly +by π0 decays at the fixed target, and DM-electron scattering or visible decay events +are detected at the downstream detector. +• γ+missing energy search — The DM may be produced at B-factories by process +e+e− → γ +A′(∗) → γχ¯χ. The mono-photon and missing-energy events at the BaBar +set bounds on the DM models [32,42,43]. +• Direct detection experiments — The DM-SM non-relativistic scattering may be de- +tected in direct detection experiments, such as XENON-10/100 and CRESST II [44– +47]. For the DM-nuclear scattering process, the CRESST II experiment is sensitive +to mχ ∼ 1 GeV because of the low nuclear recoil energy threshold. The sub-GeV +DMs with MeV to GeV mass may also be explored using the DM-electron scattering +processes. +As the future DM searches, we included projected sensitivities at Belle II [12, 32], +BDX [29], LDMX [32], SENSEI [32], and SuperCDMS [12, 32] in Figs. 5-9 to compare +with the sensitivity reaches of the ILC-BDX. +5 +Summary +In this paper, we explored the potential of a search for sub-GeV dark matter at the ILC +beam dumps using the ILC-BDX setup. Previous studies of beam dump experiments at +the ILC focused on long-lived BSM particles decaying into visible SM final states. In this +study, on the contrary, we consider DM models where a dark photon connects the stable +DM to the SM sector, and focus on DM detection. Five DM models, i.e., pseudo-Dirac DM +with small and large mass-splitting, scalar elastic and inelastic DM, and Majorana DM are +considered as reference scenarios. At the ILC, electrons and positrons in electromagnetic +shower are produced by the beam injection into the beam dumps. These particles produce +dark photons through the bremsstrahlung and pair-annihilation processes, which in turn +decay to pairs of DM particles. (Pair-production of DM via virtual dark photon exchange +is also possible,) Produced DM particles propagate over a long distance (of order 100 m) to +the detector and elastically scatter with electrons inside the detector, and then the recoil +electrons are detected as a signature of the DM production. For the inelastic DM models, +there is another signal produced by a visible decay of the heavier dark state into the lighter +one and SM particles. The ILC-BDX setup includes a multi-layer tracker designed to search +for this visible-decay signal. +19 + +In the DM search at the ILC-BDX, there are two kinds of backgrounds, i.e., the beam- +induced and beam-unrelated BGs. The beam-induced BG is due to neutrinos mainly pro- +duced by meson and lepton decays in the beam dumps. Elastic neutrino-electron scat- +tering in the detector is nearly indistinguishable from DM-induced electron recoil events, +providing irreducible BGs to this search. Inelastic neutrino-nucleus interactions can also +mimic electron-recoil and visible-decay signals, though these backgrounds are potentially +reducible. We evaluated the neutrino-induced irreducible and reducible BGs by using the +neutrino fluxes at the detector calculated with Monte Carlo simulation. We also estimated +the beam-unrelated BG, which comes predominantly from cosmic-ray muons. This BG +component can be significantly suppressed by the deep underground location of the detec- +tor and beam-coincidence time window. +We evaluated the number of DM particles produced at the ILC electron and positron +beam dumps and the rate of expected signal events, i.e., electron-DM recoils and visible- +decays at the ILC-BDX, in our reference models. The predicted signal and background +rates were then used to estimate the sensitivity reach of the ILC-BDX experiment with a +data set corresponding to a 10-year ILC run at √s = 250 GeV. The results for each DM +model are shown in Figs. 5-9. We found that in all five reference models considered here, +the ILC-BDX experiment has sensitivity to regions of model parameter space well beyond +the existing constraints. In many cases, the ILC-BDX can conclusively probe the region +of parameter space where the DM has the thermal abundance consistent with observations +(the “relic target”). We find that while electron and positron beam dumps have similar +performances, the sensitivity of the latter is somewhat better because the primary positron +beam contributes to the DM production through pair-annihilation on electrons in the dump. +The sensitivity of the ILC-BDX is particularly impressive in models where the visible-decay +signal is available, such as the pseudo-Dirac or scalar inelastic DM models with mass- +splitting ∆ > 2me. In such models, the reach of the ILC-BDX significantly exceeds that of +even the most ambitious proposed dedicated searches for sub-GeV DM, such as LDMX. +In the discussion of future searches for sub-GeV dark matter, it is important to note +the complementarity between the electron-recoil technique used by ILC-BDX and the miss- +ing energy/momentum technique used by experiments such as LDMX. The signal rate at +missing energy experiments is simply proportional to the total cross section of DM produc- +tion by the beam electron interactions with the target material. On the other hand, the +signal rate at electron-recoil experiments is proportional to the product of this production +cross section and that of the elastic scattering of DM on target electrons. The relationship +between the production and elastic scattering cross sections is model-dependent. Thus, +analyzing data from both types of experiments will provide an opportunity to identify the +underlying DM model, if a signal is observed with one or both approaches. This is an +exciting possibility, and it strongly motivates pursuing both approaches in parallel in the +future. +20 + +In our evaluation of the acceptance of the signal events, we adopted some simplifying +assumptions, for instance, the approximated angular distribution of the heavy DM state +in Eq. (2.5) and radial deviations in Eqs. (2.7) and (2.10). Likewise, several simplifying +assumptions were made in the estimates of the background rates; see Section 3. +As a +next step, it would be important to design a realistic Monte Carlo model of the ILC-BDX +detector, and use it to provide a more precise evaluation of both signal and background +rates. Another important direction for future work is to design strategies for handling the +reducible beam-induced BG, such as additional cuts or a veto system, and to evaluate such +strategies quantitatively using Monte Carlo simulations. +Acknowledgements +We are grateful to the members of the ILC Task Force on fixed-target experiments and dark +sectors, especially Claude Vallee, for discussions that initiated this work. KA is supported +by JSPS KAKENHI Grant Number JP18H01210, JP21K20365, and MEXT KAKENHI +Grant Number JP18H05543. YS is supported by JSPS KAKENHI JP21H05466. MP is +supported by the NSF grant PHY-2014071. +A +Dark photon production cross sections +In this appendix, we list the cross sections of dark photon production via pair-annihilation +and bremsstrahlung. +A.1 +Pair-annihilation production +The cross section of the resonant annihilation process is given by [48] +σ(e+e− → A′) = 12π +m2 +A′ +Γ2 +A′/4 +(√s − mA′)2 + Γ2 +A′/4, +(A.1) +where s is the center-of-mass energy squared and ΓA′ is the total decay width of the dark +photon. In this work, ΓA′ is assumed to be small enough that the narrow-width approxi- +mation can be used: +σ(e+e− → A′) ≃ 2π2αϵ2 +me +δ +� +Ei − m2 +A′ +2me ++ me +� +, +(A.2) +where δ(x) denotes the Dirac delta function. +21 + +A.2 +Bremsstrahlung production +The differential cross section of the bremsstrahlung process under the Weizs¨acker-Williams +approximation [49–52] is given by [53,54] +d2σ(iN → iA′N) +dEA′ dθA′ += ϵ2α3 1 +Ei +sin θA′ +� +E2 +A′ − m2 +A′ +� +E2 +i − m2 +e +1 +1 − x +A2→2 +t=tWW +min +2tWW +min +χ, +(A.3) +where x = EA′/Ei, tWW +min = ˜s2/4E2 +i , ˜s = −˜u/(1 − x), and +˜u = −xE2 +i θ2 +A′ − m2 +A′ 1 − x +x +− m2 +ex. +(A.4) +The effective flux of photons, χ, is given by +χ = +� tmax +tmin +dt t − tmin +t2 +G2(t) += Z2 +� +1 − b +a +�−2 � +− (a + b + 2abtmax)(tmax − tmin) +(1 + atmax)(1 + btmax) ++ a + b + 2abtmin +a − b +ln +�1 + atmax +1 + btmin +1 + btmin +1 + atmin +� � +(A.5) +with tmin = m4 +A′/4E2 +i , tmax = m2 +A′ + m2 +e, and +G2(t) = +�� +at +1 + at +� � +1 +1 + bt +� +Z +�2 +, +a = 1122Z−2/3 +m2 +e +, +b = +1 +0.164 GeV2A−2/3, +(A.6) +where Z is the atomic number and A is the mass number of the target atom. The amplitude +under the the Weizs¨acker-Williams approximation is given by +A2→2 +t=tWW +min = 22 − 2x + x2 +1 − x ++ 4(m2 +A′ + 2m2 +e) ˜ux + m2 +A′(1 − x) + m2 +ex2 +˜u2 +. +(A.7) +B +DM-electron recoil cross sections +For the inelastic-fermion DM model and the scalar DM model, the cross section of the +DM-electron recoil process is given by [30,55], +dσ(χ1e → χ2e) +dEe += +me +8πλ(s, m2 +e, m2 +χ1)|M|2, +(B.1) +where Ee is the energy of the recoil electron, λ(x, y, z) = (x − y − z)2 − 4yz, Ee = Eχ1 + +me − Eχ2, and s = m2 +χ1 + m2 +e + 2meEχ1. The squared matrix elements are given by +|M|2 = +8me(ϵegD)2 +[2me(Eχ2 − Eχ1) − m2 +A′]2 +� +me(E2 +χ1 + E2 +χ2) +− ∆2 +2 (Eχ2 − Eχ1 + me) + m2 +e(Eχ2 − Eχ1) + m2 +χ1Eχ2 − m2 +χ2Eχ1 +� +(B.2) +22 + +for the pseudo-Dirac inelastic DM model and +|M|2 = +8me(ϵegD)2 +[2me(Eχ2 − Eχ1) − m2 +A′]2 +� +2meEχ1Eχ2 + m2 +χ1Eχ2 − m2 +χ2Eχ1 +� +(B.3) +for the scalar inelastic DM model, where Eχi (i = 1, 2) is the energy of χi measured in the +laboratory frame. The kinematically allowed maximum (minimum) recoil energy E+ +e (E− +e ) +is given by [55] +E± +e = s + m2 +e − m2 +χ2 +2√s +Eχ1 + me +√s +± +� +λ(s, m2 +e, m2 +χ2) +2√s +pχ1 +√s, +(B.4) +where pχ1 = �E2 +χ1 − m2 +χ1. +The recoil cross section for the other models are given by [30,40,55,56] +dσ(χe → χe) +dEe += 4πϵ2ααD +2meE2 +χ − (2meEχ − meEe + m2 +χ + 2m2 +e)(Ee − me) +(E2 +χ − m2 +χ)(m2 +A′ + 2meEe − 2m2 +e)2 +(B.5) +for the pseudo-Dirac elastic DM model, +dσ(χe → χe) +dEe += 4πϵ2ααD +2meE2 +χ − (2meEχ + m2 +χ)(Ee − me) +(E2 +χ − m2 +χ)(m2 +A′ + 2meEe − 2m2 +e)2 +(B.6) +for the scalar elastic DM model, and +dσ(χe → χe) +dEe += 4πϵ2ααD +2me(E2 +χ − m2 +χ) + [m2 +χ − me(2Eχ − Ee + 2me)](Ee − me) +(E2 +χ − m2 +χ)(m2 +A′ + 2meEe − 2m2 +e)2 +(B.7) +for the Majorana DM model. The range of Ee is given by Eq. (B.4) with replacing χi by +χ. +C +Neutrino-induced background +We evaluate the number of neutrino-induced irreducible and reducible BG events from +the neutrino flux of Fig. 2. The number of irreducible BG events does not depend on the +details of the detector design and is evaluated in the same way as the signal rate calculation +in Section 2. On the other hand, the number of reducible BG events highly depends on +the detector design, so we conservatively take a pessimistic scenario without imposing the +threshold energy of the electromagnetic showers#11. This section describes the detailed +calculations of the number of BG events. +23 + +10-3 +10-2 +10-1 +100 +101 +0 +1 +2 +3 +4 +5 +6 +Emin [GeV] +NBG +10-3 +10-2 +10-1 +100 +101 +0 +10 +20 +Emin [GeV] +N95 % +ILC-250 +1 yr. +10 yr. +Figure 10: Left panel: The number of irreducible BG events in a 1-year run as a function +of the threshold Emin. Right panel: The number of signal events at 95% C.L. in a 1-year +(blue) and 10-year (red) run as a function of the threshold Emin. +C.1 +Irreducible background +The number of neutrino-electron recoil events is expressed by the following formula: +NBG = Ne± +� +i=νe,µ,τ,¯νe,µ,τ +� +dEi πr2 +det · dφi +dEi +· n(det) +e− +· ldet · +� +Emin +dER +dσ(ie− → ie−) +dER +, +(C.1) +where φi is the neutrino flux at the detector position (Fig. 2 right) and σ(ie− → ie−) +denotes the neutrino-electron elastic scattering cross section [57,58]. +In the left panel of Fig. 10, the number of neutrino-electron recoil events per year is +shown as a function of the threshold Emin. The rate is reduced to N BG +beam ∼ 1/year by +imposing Emin = 1 GeV. By taking into account the irreducible BG events and assuming +no signal events are observed, we estimate the expected upper bounds on the number of +signal events at 95% C.L.#12, shown by the solid lines in the right panel of Fig. 10. +#11The rate of quasi-elastic scattering and pion production processes would not change significantly by +imposing the threshold Emin = 1 GeV because their cross sections are very small for neutrino energy +smaller than 1 GeV. +#12The Poisson 95% C.L. upper bound corresponds to three signal events in the absence of BG events. +24 + +C.2 +Reducible background +The number of quasi-elastic scattering events is estimated by the following formula: +NQE = Ne± +� +dEν πr2 +det · ldet · +�dφνe +dEν +n(det) +n +σ(νen → e−p) + dφ¯νe +dEν +n(det) +p +σ(¯νep → e+n) +� +, +(C.2) +where φνe and φ¯νe are the electron-neutrino and electron-antineutrino fluxes at the detector +position (see the right panel of Fig. 2), n(det) +n(p) is the neutron (proton) number density of +the detector, and σ denotes the quasi-elastic scattering cross section [58]. In contrast to +the estimation of the irreducible BG events, we do not impose the threshold energy of the +electromagnetic shower; Eq. (C.2) is therefore a conservative estimate. From Eq. (C.2), the +number of the quasi-elastic scattering events per year is estimated as +NQE ∼ 2 × 102 × +� +Ne± +4 × 1021 +�� rdet +2 m +�2� +ldet +0.64 m +� +. +(C.3) +Similarly, the number of the single-π0 production events is given by +Npion = Ne± +� +dEν πr2 +det · ldet +× +� +dφνµ +dEν +� +n(det) +n +� +σ(νµn → µ−pπ0) + σ(νµn → νµnπ0) +� ++ n(det) +p +σ(νµp → νµpπ0) +� ++ dφν¯µ +dEν +� +n(det) +p +� +σ(¯νµp → µ+nπ0) + σ(¯νµp → ¯νµpπ0) +� ++ n(det) +n +σ(¯νµn → ¯νµnπ0) +�� +, +(C.4) +where the single-π0 production cross sections are listed in Ref. [58]. Combining the neutrino +flux of the right panel of Fig. 2 and the cross sections in Ref. 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Peking University,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Beijing 100871,' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' China Abstract Light dark matter particles may be produced in electron and positron beam dumps of the International Linear Collider (ILC).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We propose an experimental setup to search for such events, the Beam-Dump eXperiment at the ILC (ILC-BDX).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The setup consists of a muon shield placed behind the beam dump, followed by a multi- layer tracker and an electromagnetic calorimeter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The calorimeter can detect electron recoils due to elastic scattering of dark matter particles produced in the dump, while the tracker is sensitive to decays of excited dark-sector states into the dark matter particle.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We study the production, decay and scattering of sub-GeV dark matter particles in this setup in several models with a dark photon mediator.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Taking into account beam-related backgrounds due to neutrinos produced in the beam dump as well as the cosmic-ray background, we evaluate the sensitivity reach of the ILC-BDX experiment.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We find that the ILC-BDX will be able to probe interesting regions of the model parameter space and, in many cases, reach well below the relic target.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' arXiv:2301.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='03816v1 [hep-ph] 10 Jan 2023 Contents 1 Introduction 1 2 Beam dump experiment 4 3 Expected backgrounds 7 3.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='1 Beam-induced background .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 22 B DM-electron recoil cross sections 22 C Neutrino-induced background 23 C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='1 Irreducible background .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 24 C.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='2 Reducible background .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': 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'/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' .' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 25 1 Introduction The International Linear Collider (ILC) has been proposed as the next energy-frontier facility in particle physics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The physics program of the ILC is well established [1–3]: it in- cludes measurements of the Higgs boson couplings with unprecedented precision, searches 1 for new physics in rare Higgs decays and other channels, and precise top-mass determina- tion, among other topics.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Most studies of the physics potential of the ILC to date focus on experiments with the detector situated at the main interaction point, where the electron and positron beams collide head-on, yielding the maximum collision energy.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Recently, it was suggested that, in parallel with the experiments at the main interaction point, the ILC can pursue a complementary physics program using its beam dumps [4–10].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Particle collisions within the beam dumps occur in fixed-target kinematics, with typical effective energies of O(10) GeV or below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' At the same time, since every beam-electron and beam-positron interacts with the dump, the beam-dump experiments can accumulate enormous integrated luminosity.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' This makes the beam dump the ideal place to search for relatively light new particles with very small couplings to the Standard Model (SM).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The new physics targeted by the beam-dump experimental program is very well mo- tivated theoretically [11, 12].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Previously studied examples include visibly-decaying dark photons, axion-like particles, vector bosons associated with gauged lepton flavor symme- tries, and heavy neutral leptons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In all these cases, it was demonstrated that beam-dump experiments at the ILC can probe model parameters well beyond the reach of the currently available experiments and are competitive with proposed future dedicated facilities.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In this paper, we propose a new search for light dark matter using the ILC beam dumps.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' It is well known that a stable particle with mass in the MeV–GeV range, interacting with the SM via a dark photon mediator, is an attractive dark matter (DM) candidate.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' With reasonable model parameters, its thermal relic density matches the observed DM abundance and it is consistent with all astrophysical and experimental constraints.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The DM particles can be pair-produced at the ILC beam dump via virtual dark-photon exchanges or in decays of dark photons.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' An electromagnetic calorimeter placed ∼ 100 m downstream of the beam dump, behind a lead shield is designed to search for the DM by detecting elastic scattering of the DM particles on the electrons in the detector material.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In addition, in many models such as inelastic DM [13], the DM particle is the lowest-lying state of a multiplet with small mass splittings.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' A long-lived excited state in the same multiplet as the DM, produced at the beam dump, may propagate through the lead shield and decay into the DM and charged SM particles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The charged particles can then be detected by a tracker, providing a “visible decay” signature of the DM.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We will estimate the experimental reach in both electron-recoil and visible-decay signal.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The proposed experimental setup is illustrated in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The concept of this experiment is the same as the Beam-Dump eXperiment (BDX) proposed at JLab [14], and we, therefore, call our proposal “ILC-BDX.” The advantage of the ILC, compared to the original BDX proposal, is the higher beam energy as well as availability of both electron and positron beams.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='#1 We also note that the experimental setup used here is essentially identical to #1An additional advantage is the availability of polarized beams at the ILC.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We will not explore conse- 2 ldec Beam dump Muon shield lsh ldump rdet Detector z Lead Concrete Water e± ldet Decay volume (Multi-layer tracker) rdec e+ e− χ χ e± Nucleus e± χ χ γ* A′ A′ e− e− A′ * χ χ A′ * e− e+ χ2 χ1 Figure 1: The ILC-BDX experimental setup consists of the main beam dump, a muon shield, a decay volume, and a detector.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' A multi-layer tracker is placed in the decay volume to measure the charged tracks.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The DM particles may be produced at electron and positron beam dumps via pair-annihilation of positron on an atomic electron, or via bremsstrahlung.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The resulting DM particles can scatter off electrons in the detector and yield observable electron-recoil events.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In models where the DM particle is part of a multiplet, an excited DM state may be produced.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' It can then decay into a lighter DM state and SM particles in the decay volume, producing a visible signature in the tracker.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' that proposed previously for searches for visible dark photons and axion-like particles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (Detailed design of the detector may be different to optimize the sensitivity for various searches, but this is outside the scope of this study.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=') The ILC-BDX can be pursued in parallel to the previously discussed searches, adding to the rich physics program at the ILC beam dumps.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' It is important to emphasize that this program can be pursued in parallel with the exploration of the Higgs and electroweak physics at the main IP, and can broaden the capabilities of the ILC to search for physics beyond the Standard Model (BSM) at a modest additional cost.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The rest of the paper is organized as follows.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In Section 2, we introduce the setup of our proposed experiment for sub-GeV DM search at the ILC beam dumps, and list formulae used to calculate the number of expected signal events.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In Section 3, we discuss the two types of background (BG) events that occur in this setup, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=', beam-induced and cosmic-ray backgrounds, and estimate the number of events expected from each BG.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In Section 4, we introduce five DM models used as benchmarks, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=', pseudo-Dirac DM with small and large mass-splitting, scalar elastic and inelastic DM, and Majorana DM.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We then present our estimates of the ILC-BDX sensitivity reach for each model.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The main findings of our analysis are summarized in Section 5.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The Appendix contains the formulae for cross sections of the relevant dark-photon production processes (Appendix A) and the quences of polarization in this paper, but note that it can be particularly useful in characterizing the new physics if a non-SM signal is observed.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 3 DM-electron elastic scattering (Appendix B), as well as some details of our estimates of neutrino-induced BG rates (Appendix C).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 2 Beam dump experiment We adopt the same experimental setup as that of Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' [9], which is illustrated in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' For both electron and positron beams, the ILC main beam dumps are planned as absorbers consisting of water cylinders along the beam axes with the length of ldump = 11 m [15].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The proposed setup consists of a muon shield with the length of lsh = 70 m made of lead, a cylindrical decay volume with ldec = 50 m and radius of rdec = 3 m with a multi-layer tracker installed, and a cylindrical detector with the radius of rdet = 2 m and the length of ldet = 0.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='64 m, behind either of the beam dumps.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The multi-layer tracker is designed to detect the visible-decay signal, while the cylindrical detector is assumed to be an electromagnetic (EM) calorimeter made of CsI(Tl) scintillating crystals (n(det) e− = 1.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='1 × 1024 cm−3) designed to detect recoil electrons caused by incoming boosted DM particles (electron-recoil signals).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We focus on the 250 GeV ILC (ILC-250) with the beam energy of Ebeam = 125 GeV in the lab frame, and the number of incident electrons and positrons into the beam dump of Ne± = 4×1021/year [1,16–19].' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' As studied comprehensively in Refs.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' [5,6,9,20], this setup was found very sensitive to long-lived BSM particles decaying into visible SM particles thanks to its thick shield.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We will see that, with the calorimeter as a recoil-electron detector, it is also sensitive to DM particle production.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We study two types of signal events associated with different production mechanisms of DM particles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' If the DM particles are produced in the water beam dump by a BSM interac- tion (such as dark photons), they are highly boosted and, passing through the muon shield, scatter off electrons in the calorimeter.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Such electron recoils, detected by the calorimeter, are a typical signal of DM production.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' On the other hand, the DM particles may also be produced in in-flight decays of heavier DM-sector particles if, for example, the DM is the lowest-lying state of a multiplet.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The heavier particle, which we denote by χ2, can pass through the muon shield and then eventually decay into a DM particle χ1 and SM particles.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' If the decay happens in the decay volume, charged tracks may be observed in the tracker.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' This visible-decay signature is used as an additional signal of DM production.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In this work, we focus on five DM models with the dark photon mediator to provide a benchmark study.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' They are pseudo-Dirac-fermion DM with small or large mass-splitting, scalar elastic DM, scalar inelastic DM, and Majorana-fermion DM.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The details of each model are discussed in Section 4.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Among the models, the pseudo-Dirac DM with small mass-splitting, scalar DM, and Majorana DM can be observed as electron-recoil events.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Meanwhile, the pseudo-Dirac DM with large mass-splitting can produce visible-decay events in addition to electron-recoil signature;' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' specifically, due to the pseudo-Dirac nature, a 4 produced dark photon A′ decays mainly into χ2 ¯χ1 (or χ1 ¯χ2) and the heavier DM-sector particle χ2 may decay visibly in the decay volume.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The number of signal events is schematically given by Nsignal = Ne± × li × nj × σij→A′→DM × Acc, (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='1) where we consider a particle i in the shower interacting with a particle j in the material of the beam dump to produce DM particles through an on-shell dark photon A′ as the mediator.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The track length le± of a shower electron and positron is provided in Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' [6], nj is the number density of j, and Acc denotes the detector acceptance discussed below.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' More specifically#2, N pair signal = Ne± � dEe+ dle+ dEe+ · ne− · σ(e+e− → A′) · Br(A′ → χ¯χ) · Acc, (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='2) N brems signal = Ne± � i=e−,e+ � dEi dli dEi nN � dEA′ � π 0 dθA′ d2σ(iN → iA′N) dEA′dθA′ Br(A′ → χ¯χ) · Acc (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='3) for pair-annihilation e+e− → A′ and bremsstrahlung e±N → e±A′N with a target nucleus N, respectively.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The cross sections σ on the right-hand side are provided in Appendix A.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Here θA′ is the emission angle of A′ with respect to the direction of the e± beam in the lab frame.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In all the models we consider, it is assumed that dark photons decay exclusively into the DM-sector particles, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=', Br(A′ → χ¯χ) = 1, with χ being a DM sector particle (χ1 and/or χ2).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' This is justified since decays to SM final states are suppressed by a small mixing parameter ϵ2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Let us estimate the acceptance for each type of signal.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' For a visible-decay event to be observed, the visible decay of χ2 must occur in the decay volume.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Noting that A′ mainly decays into a χ1-χ2 pair in the models we consider, we approximate the acceptance by Acc(decay) = � rdec/(ldump+lsh) 0 dθχ � ldec 0 dzdPang dθχ dPdec dz Θ(rdec − rdec ⊥ ).' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='4) Here, we assume that the decay A′ → χ2 ¯χ1 (or χ1 ¯χ2) is immediate and χ2 exclusively decays into electrons because of the small mass difference ∆ ≡ mχ2 − mχ1 < 2mµ.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The lab frame distribution of the χ2 emission angle θχ is approximated by#3 dPang dθχ = sin θχ · 1 2 � mA′ EA′ − pA′ cos θχ �2 , (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='5) #2In Ref.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' [9], this calculation scheme is referred to as the coarse-grained integration method.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' #3The angular distribution in the CM-frame is given by dPang/d cos θCM χ = 1/2 when the polarization of the dark photon is averaged.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 5 and dPdec/dz denotes the probability of χ2 to decay at the position z (the horizontal axis in Fig.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' 1), i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=', dPdec dz = 1 l(lab) χ2 exp � −ldump + lsh + z l(lab) χ2 � , l(lab) χ2 = pχ2 mχ2 1 Γχ2 (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='6) with l(lab) χ2 denoting the lab frame decay length of χ2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The lab-frame momentum of χ2 is approximated by pχ2 ≈ (EA′ + pA′ cos θχ)/2, where the mass-splitting is neglected.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The momentum of A′ is obtained by pA′ = � E2 A′ − m2 A′, and Γχ2 (mχ2) is the total decay width (the mass) of χ2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The Heaviside function Θ in Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='4) governs the radial requirement on the decay position of χ2, i.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='e.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=', the radial deviation rdec ⊥ ≈ � θ2 e + θ2 A′ + θ2 χ · (ldump + lsh + z) (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='7) must be smaller than the radius rdec of the multi-layer tracker.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' In Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='7), θe is the angle of the beam-oriented e± with respect to the beam axis, θA′ is the production angle of A′ and is equal to 0 for pair-annihilation, and θχ is the emission angle of χ2 at the decay of A′.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' We estimate θe by Monte Carlo simulations [6] and use the mean value θe = 16 mrad · GeV/Ee±.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='8) Similarly, we estimate the acceptance for electron-recoil signal as Acc(recoil) = � rdet/(ldump+lsh+ldec) 0 dθχ dPang dθχ Θ(rdet − rrec ⊥ ) · Precoil, (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='9) where the radial deviation is approximately given by rrec ⊥ = � θ2 e + θ2 A′ + θ2 χ · (ldump + lsh + ldec), (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='10) and Precoil is the probability of electron recoil Precoil = n(det) e− ldet � E+ e E− e dER dσrecoil dER Θ(ER − Emin) (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='11) given by the electron number density n(det) e− of the detector, the length ldet of detector, kinematically allowed maximum (minimum) recoil energy E+ e (E− e ) given by Eq.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' (B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='4), and the effective recoil cross section approximated by dσrecoil dER ≈ dσ(χ1e− → χ2e−) dER + dσ(χ2e− → χ1e−) dER exp � −ldump + lsh + ldec l(lab) χ2 � (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='12) for models with χ2 and dσrecoil dER ≈ 2 × dσ(χe− → χe−) dER (2.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='13) for the other models.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' The analytical formulae for the differential cross section of the DM- electron scattering are shown in Appendix B.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' Here, the electron recoil energy ER is required to be larger than the threshold Emin = 1 GeV to reduce BG events.' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content=' ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='6 ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='E d� ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='dE ' metadata={'source': '/home/zjlab/wf/langchain-ChatGLM/knowledge_base/J9E2T4oBgHgl3EQfUwdx/content/2301.03816v1.pdf'} +page_content='[1/cm2/incident-e] ' metadata={'source': 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