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function [Corrected_P] = Run_Thresh_1D(TEMP1,TEMP2,site,ttesttype)
SHUFFLES=5000;
for shuffi=1:SHUFFLES
tempA=squeeze(mean(TEMP1(:,site,251:1001),2));
tempB=squeeze(mean(TEMP2(:,site,251:1001),2));
tempAB=[tempA;tempB];
idx=shuffle([ones(1,25),zeros(1,25)]);
A=tempAB(idx==1,:);
B=tempAB(idx==0,:);
if strmatch(ttesttype,'between')
[H,P,CI,STATS]=ttest2(A,B);
elseif strmatch(ttesttype,'within')
[H,P,CI,STATS]=ttest(A,B);
end
P(P<=.05)=NaN; P(P>.05)=0; P(isnan(P))=1;
P=squeeze(P);
l=bwlabel(P);
if max(l)>0
for ei=1:max(l)
idxs = find(l == ei);
tempthresh(ei) = sum(abs(STATS.tstat(idxs)));
end
THRESH(shuffi) = max(tempthresh);
clear idxs tempthresh ;
else
THRESH(shuffi) = 0;
end
clear H CI P STATS temp* A B idx l dims lmax;
end
THRESH=sort(THRESH);
ThisThreshold=THRESH(end-SHUFFLES*.05);
% NOW Run 1D size of effects
if strmatch(ttesttype,'between')
[H,P,CI,STATS]=ttest2(squeeze(mean(TEMP1(:,site,251:1001),2)),squeeze(mean(TEMP2(:,site,251:1001),2)));
elseif strmatch(ttesttype,'within')
[H,P,CI,STATS]=ttest(squeeze(mean(TEMP1(:,site,251:1001),2)),squeeze(mean(TEMP2(:,site,251:1001),2)));
end
P(P<=.05)=NaN; P(P>.05)=0; P(isnan(P))=1;
P=squeeze(P);
l=bwlabel(P);
Corrected_P=NaN*ones(1,751);
if max(l)>0
for ei=1:max(l)
idxs = find(l == ei);
if sum(abs(STATS.tstat(idxs))) > ThisThreshold
Corrected_P(idxs) = 1;
end
end
end
clear H CI P STATS temp* A B idx l dims lmax idxs;
clear THRESH ThisThreshold
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