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clear ;
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clc;
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close all;
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savedir='D:\Project_EEG_CC\CC_Results_step2_AllChannels_NEW\'; % Data are here with baseline correction
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cd(savedir);
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load('D:\Project_EEG_CC\mFiles\ONOFF.mat','ONOFF')
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load('D:\Project_EEG_CC\mFiles\BV_Chanlocs_60.mat');
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PDsx=[801:811,813:829]; % 824 S2 CC is bad (manage here)
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CTLsx=[8010,8070,8060,890:914]; % 911 S1 CC is bad (manage here)
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BigN=size(ONOFF,1)./2;
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% load PD OFF and ON data
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row=1;
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for mi=1:size(ONOFF,1)
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disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
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if ONOFF(mi,1)==824 && ONOFF(mi,2)==2 % Bad EEG
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VECTOR=NaN; ERPs=NaN(size_erp); POWER=NaN(size_power);
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else
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load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
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size_erp=size(ERPs); size_power=size(POWER);
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end
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if ONOFF(mi,3)==1 % ON
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ON.ID(floor(row))=ONOFF(mi,1);
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ON.Session(floor(row))=ONOFF(mi,2);
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ON.ERPs(floor(row),:,:,:,:)=ERPs;
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ON.POWER{1}(floor(row),:,:,:,:,:)=POWER;
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elseif ONOFF(mi,3)==0 % OFF
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OFF.ID(floor(row))=ONOFF(mi,1);
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OFF.Session(floor(row))=ONOFF(mi,2);
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OFF.ERPs(floor(row),:,:,:,:)=ERPs;
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OFF.POWER{1}(floor(row),:,:,:,:,:)=POWER;
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end
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row=row+.5;
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clear ERPs VECTOR POWER;
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end
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% load control data
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row=1;
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for CTLi=CTLsx;
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disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
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if ONOFF(mi,1)==911 && ONOFF(mi,2)==1 % Bad EEG
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VECTOR=NaN; POWER=NaN(size_power);
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else
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load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
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end
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CTL.ID(floor(row))=CTLi;
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CTL.Session(floor(row))=1;
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CTL.ERPs(floor(row),:,:,:,:)=ERPs;
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CTL.POWER{1}(floor(row),:,:,:,:,:)=POWER;
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row=row+1;
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clear ERPs VECTOR POWER ;
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end
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CtlN=row-1;
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%% ################################## ERPs......Cue-locked #############
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tx2disp=-500:2:1000;
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frex=logspace(.01,1.7,50);
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CHAN=21; % Cz
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paneli = 1; % Cue
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figure;
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%%%% for Control
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subplot(341)
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shadedErrorBar2(tx2disp,squeeze(nanmean(CTL.ERPs(:,CHAN,:,1,paneli),1)),squeeze(nanstd(CTL.ERPs(:,CHAN,:,1,paneli),1))./sqrt(28),'lineprops','b');hold on
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plot(tx2disp,squeeze(nanmean(CTL.ERPs(:,CHAN,:,1,paneli),1)),'b','linewidth',2); hold on
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shadedErrorBar2(tx2disp,squeeze(nanmean(CTL.ERPs(:,CHAN,:,2,paneli),1)),squeeze(nanstd(CTL.ERPs(:,CHAN,:,2,paneli),1))./sqrt(28),'lineprops','c');hold on
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plot(tx2disp,squeeze(nanmean(CTL.ERPs(:,CHAN,:,2,paneli),1)),'c','linewidth',2); hold on
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plot([0 0],[-5 10],'k:');
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title(' Control: Cz');hold off; box off; ylim([-3 3]);
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%%%% for PD ON
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subplot(345)
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shadedErrorBar2(tx2disp,squeeze(nanmean(ON.ERPs(:,CHAN,:,1,paneli),1)),squeeze(nanstd(ON.ERPs(:,CHAN,:,1,paneli),1))./sqrt(28),'lineprops','r');hold on
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plot(tx2disp,squeeze(nanmean(ON.ERPs(:,CHAN,:,1,paneli),1)),'r','linewidth',2); hold on
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shadedErrorBar2(tx2disp,squeeze(nanmean(ON.ERPs(:,CHAN,:,2,paneli),1)),squeeze(nanstd(ON.ERPs(:,CHAN,:,2,paneli),1))./sqrt(28),'lineprops','m');hold on
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plot(tx2disp,squeeze(nanmean(ON.ERPs(:,CHAN,:,2,paneli),1)),'m','linewidth',2); hold on
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plot([0 0],[-5 10],'k:');
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title('PD ON: Cz');hold off; box off; ylim([-3 3]);
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% % &&&&&&&&&&&&&&&&&&&&& Time Frequnecy &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
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tx2disp=-500:2:1000;
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frex=logspace(.01,1.7,50);
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Bidx=1; % 1 is pre-cue baseline
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CHANI=21; % channel 21 Cz
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%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control
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CTL_Conf2 = CTL.POWER{Bidx}(:,CHANI,:,:,2,paneli); CTL_Conf1 = CTL.POWER{Bidx}(:,CHANI,:,:,1,paneli);
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ON_Conf2 = ON.POWER{Bidx}(:,CHANI,:,:,2,paneli); ON_Conf1 = ON.POWER{Bidx}(:,CHANI,:,:,1,paneli);
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CTL_Conf12 = (squeeze( nanmean(CTL_Conf2,1)) + squeeze( nanmean(CTL_Conf1,1)))/2;
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PD_ON_Conf12 = (squeeze( nanmean(ON_Conf2,1)) + squeeze( nanmean(ON_Conf1,1)))/2;
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CTL_Conf21 = squeeze( nanmean(CTL_Conf2,1)) - squeeze( nanmean(CTL_Conf1,1));
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PD_ON_Conf21 = squeeze( nanmean(ON_Conf2,1)) - squeeze( nanmean(ON_Conf1,1));
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% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% CONTOL and PD ON %%%%%%%%%%%%%%%%%%%%
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%%% Control
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subplot(342);
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imagesc(tx2disp,[], CTL_Conf12); axis xy; hold on;colormap jet
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plot([0 0],[1 50],'k:')
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set(gca,'clim',[-4 4],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off ; title ('CTL:Avg of Cong and Incong');
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subplot(343);
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imagesc(tx2disp,[], CTL_Conf21); axis xy; hold on; colormap jet
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[Corrected_P] = Run_Thresh_2D(squeeze(CTL_Conf2 ) , squeeze(CTL_Conf1), 'within');
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contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
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plot([0 0],[1 50],'k:')
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set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title ('CTL:Incong-Cong');
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%%% PD ON
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subplot(346);
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imagesc(tx2disp,[],PD_ON_Conf12); axis xy; hold on;colormap jet
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plot([0 0],[1 50],'k:')
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set(gca,'clim',[-4 4],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title ('PD ON: Avg of Cong and Incong');
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subplot(347);
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imagesc(tx2disp,[],PD_ON_Conf21); axis xy; hold on; colormap jet
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[Corrected_P] = Run_Thresh_2D(squeeze(ON_Conf2 ) , squeeze(ON_Conf1), 'within');
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contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
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plot([0 0],[1 50],'k:')
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set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title ('PD ON: Incong-Cong');
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%%% CTL-PD ON
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subplot(3,4,10);
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imagesc( tx2disp,[], (CTL_Conf12) - (PD_ON_Conf12) ); axis xy; hold on; colormap jet
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[Corrected_P] = Run_Thresh_2D( (squeeze(ON_Conf1)+squeeze(ON_Conf2))/2, (squeeze(CTL_Conf1)+ squeeze(CTL_Conf2))/2, 'between') ;
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contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
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plot([0 0],[1 50],'k:')
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set(gca,'clim',[-2 2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('CTL-ON (Avg Cong and Incong)');hold off; %colorbar;
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subplot(3,4,11);
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imagesc(tx2disp,[], CTL_Conf21 - PD_ON_Conf21); axis xy; hold on; colormap jet
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[Corrected_P] = Run_Thresh_2D(squeeze(ON_Conf2)- squeeze(ON_Conf1), squeeze(CTL_Conf2)- squeeze(CTL_Conf1), 'between') ;
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contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P ;
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plot([0 0],[1 50],'k:');
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% plot ROI in blue Color
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rectangle('Position',[400 18 100 9],'EdgeColor','b','LineWidth', 3)
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set(gca,'clim',[-0.5 0.5],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('CTL-ON (Incong-Cong)');
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% % ############################ TOPO ################################## ####################### TOPO ######################################
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tx1 = find (tx2disp==400); tx2 = find (tx2disp==500);
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% fq1 = min(find(frex>3)); fq2 = min(find(frex>6)); %%% older
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fq1 = min(find(frex>3.8)); fq2 = min(find(frex>7.8));
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for n = 1:28
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for Chanl = 1:60
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CTL_PowCg = CTL.POWER{1}(n,Chanl,(fq1:fq2),(tx1:tx2),1,paneli); ON_PowCg = ON.POWER{1} (n,Chanl,(fq1:fq2),(tx1:tx2),1,paneli);
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CTL_PowIncg = CTL.POWER{1}(n,Chanl,(fq1:fq2),(tx1:tx2),2,paneli); ON_PowIncg = ON.POWER{1} (n,Chanl,(fq1:fq2),(tx1:tx2),2,paneli);
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%%%% Incong and Cong ....
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IngPow_CTL = squeeze(nanmean(CTL_PowIncg)); CogPow_CTL = squeeze(nanmean(CTL_PowCg));
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IngPow_ON = squeeze(nanmean(ON_PowIncg)); CogPow_ON = squeeze(nanmean(ON_PowCg));
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IncongCTL(n).chans{Chanl,1} = nanmean(IngPow_CTL); CongCTL(n).chans{Chanl,1} = nanmean(CogPow_CTL);
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IncongON(n).chans{Chanl,1} = nanmean(IngPow_ON); CongON(n).chans{Chanl,1} = nanmean(CogPow_ON);
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end
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end
|
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IncongruentCTL = cell(28,60);CongruentCTL = cell(28,60);
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IncongruentON = cell(28,60);CongruentON = cell(28,60);
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for n = 1:28
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IncongruentCTL(n,:) = IncongCTL(n).chans ;
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CongruentCTL(n,:) = CongCTL(n).chans ;
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IncongruentON(n,:) = IncongON(n).chans ;
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CongruentON(n,:) = CongON(n).chans ;
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end
|
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IncongruentCTL = cell2mat(IncongruentCTL); CongruentCTL = cell2mat(CongruentCTL);
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IncongruentON = cell2mat(IncongruentON); CongruentON = cell2mat(CongruentON);
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load('D:\Project_EEG_CC\mFiles\BV_Chanlocs_60.mat');chanlocs = BV_Chanlocs_60;
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CTL_IncongCong = (IncongruentCTL - CongruentCTL);
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ON_IncongCong = (IncongruentON - CongruentON);
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% figure
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[~,P1,~,~]=ttest(IncongruentCTL, CongruentCTL); P1(P1>=.05)=NaN; P1(P1<.05)=1; P1(isnan(P1))=0;
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subplot(344); topoplot(nanmean(IncongruentCTL-CongruentCTL,1),chanlocs,'maplimits',[-1 1],'emarker2', {find(P1),'d','k',5,1}); title ('Control: Incong-Cong');colormap jet; clear P1
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[~,P2,~,~]=ttest(IncongruentON, CongruentON); P2(P2>=.05)=NaN; P2(P2<.05)=1; P2(isnan(P2))=0;
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subplot(348); topoplot(nanmean(IncongruentON-CongruentON,1),chanlocs,'maplimits',[-1 1],'emarker2', {find(P2),'d','k',5,1}); title ('PD');colormap jet; clear P2
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[~,P3,~,~]=ttest2(CTL_IncongCong,ON_IncongCong); P3(P3>=.05)=NaN; P3(P3<.05)=1; P3(isnan(P3))=0;
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subplot(3,4,12); topoplot(nanmean(CTL_IncongCong-ON_IncongCong),chanlocs,'maplimits',[-0.5 0.5],'emarker2', {find(P3),'d','k',5,1}); title ('Control-PD');colormap jet; clear P3
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suptitle ('Cue-locked ERPs-TF-TOPO: Incong and Cong')
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