scripts/FigureS3_ITPC.m

%% ITPC Plots
clear; clc; close all;
savedir='D:\Project_EEG_CC\CC_Results_step2_AllChannels_NEW\';   % Main Data are here
cd(savedir);
load('D:\Project_EEG_CC\mFiles\ONOFF.mat','ONOFF')
load('D:\Project_EEG_CC\mFiles\BV_Chanlocs_60.mat');

PDsx=[801:811,813:829];        %  824 S2 CC is bad (mange here)
CTLsx=[8010,8070,8060,890:914];  %  911 S1 CC is bad (mange here)
BigN=size(ONOFF,1)./2;
% load PD OFF and ON data
row=1;
for mi=1:size(ONOFF,1)

    disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==824 && ONOFF(mi,2)==2  % Bad EEG
        ITPC=NaN(size_ITPC); 
    else
        load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
        size_ITPC=size(ITPC); 
    end
        
    if ONOFF(mi,3)==1 % ON
        ON.ID(floor(row))=ONOFF(mi,1);
        ON.Session(floor(row))=ONOFF(mi,2);
        ON.ITPC(floor(row),:,:,:,:,:)=ITPC;
               
    elseif ONOFF(mi,3)==0 % OFF
        OFF.ID(floor(row))=ONOFF(mi,1);
        OFF.Session(floor(row))=ONOFF(mi,2);
        OFF.ITPC(floor(row),:,:,:,:,:)=ITPC;
     end
    row=row+.5;
    clear ITPC;
    
end
% load control data
row=1;
for CTLi=CTLsx;
    
    disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==911 && ONOFF(mi,2)==1  % Bad EEG
        ITPC=NaN(size_ITPC);
    else
        load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    end
    
    CTL.ID(floor(row))=CTLi;
    CTL.Session(floor(row))=1;
    CTL.ITPC(floor(row),:,:,:,:,:)=ITPC;
    row=row+1;
    clear ERPs VECTOR Model_Output POWER ITPC;
end
CtlN=row-1;

%% #############################################################################
clearvars -except CTL ON OFF
tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
CHANI=21;  % channel Cz
EVENT=1;  % CUE, RESP

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control

OFF_Conf2 = OFF.ITPC(:,CHANI,:,:,2,EVENT);     OFF_Conf1 = OFF.ITPC(:,CHANI,:,:,1,EVENT);
ON_Conf2 =   ON.ITPC(:,CHANI,:,:,2,EVENT);     ON_Conf1 =   ON.ITPC(:,CHANI,:,:,1,EVENT); 
CTL_Conf2 = CTL.ITPC(:,CHANI,:,:,2,EVENT);     CTL_Conf1 = CTL.ITPC(:,CHANI,:,:,1,EVENT); 

OFF_Conf21 = squeeze( nanmean(OFF_Conf2,1)) - squeeze( nanmean(OFF_Conf1,1));
ON_Conf21 =  squeeze( nanmean(ON_Conf2,1))  - squeeze( nanmean(ON_Conf1,1));
CTL_Conf21 = squeeze( nanmean(CTL_Conf2,1)) - squeeze( nanmean(CTL_Conf1,1));    

% % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% CONTOL and PD ON %%%%%%%%%%%%%%%%%%%%
 
%%% CTL-PD ON
subplot(331);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf1)) - squeeze(nanmean(ON_Conf1)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D( squeeze(ON_Conf1), squeeze(CTL_Conf1), 'between' ) ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.1 0.1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('Cue:CTL-ON (Cong)');hold off; colormap jet

subplot(332);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf2)) - squeeze(nanmean(ON_Conf2)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D( squeeze(ON_Conf2), squeeze(CTL_Conf2), 'between' ) ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.1 0.1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('Cue:CTL-ON (Incong)');hold off; colormap jet 

subplot(333);
imagesc(tx2disp,[], CTL_Conf21 - ON_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(ON_Conf2)- squeeze(ON_Conf1), squeeze(CTL_Conf2)- squeeze(CTL_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.1 0.1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('Cue:Control - PD ON (Incong-Cong)'); colormap jet
    
% % %%%%%         Response-LOCKED
clearvars -except CTL ON OFF
tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
CHANI=21;  % channel Cz
EVENT=2;  % CUE, RESP

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control

OFF_Conf2 = OFF.ITPC(:,CHANI,:,:,2,EVENT);     OFF_Conf1 = OFF.ITPC(:,CHANI,:,:,1,EVENT);
ON_Conf2 =   ON.ITPC(:,CHANI,:,:,2,EVENT);     ON_Conf1 =   ON.ITPC(:,CHANI,:,:,1,EVENT); 
CTL_Conf2 = CTL.ITPC(:,CHANI,:,:,2,EVENT);     CTL_Conf1 = CTL.ITPC(:,CHANI,:,:,1,EVENT); 

OFF_Conf21 = squeeze( nanmean(OFF_Conf2,1)) - squeeze( nanmean(OFF_Conf1,1));
ON_Conf21 =  squeeze( nanmean(ON_Conf2,1))  - squeeze( nanmean(ON_Conf1,1));
CTL_Conf21 = squeeze( nanmean(CTL_Conf2,1)) - squeeze( nanmean(CTL_Conf1,1));    

% % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% CONTOL and PD ON %%%%%%%%%%%%%%%%%%%%
  
%%% CTL-PD ON
subplot(334);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf1)) - squeeze(nanmean(ON_Conf1)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D( squeeze(ON_Conf1), squeeze(CTL_Conf1), 'between' ) ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('Resp:CTL-ON (Correct)');hold off; colormap jet

subplot(335);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf2)) - squeeze(nanmean(ON_Conf2)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D( squeeze(ON_Conf2), squeeze(CTL_Conf2), 'between' ) ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('Resp:CTL-ON (Error)');hold off; colormap jet 

subplot(336);
imagesc(tx2disp,[], CTL_Conf21 - ON_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(ON_Conf2)- squeeze(ON_Conf1), squeeze(CTL_Conf2)- squeeze(CTL_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('Resp:Control - PD ON (Error-Correct)'); colormap jet


%% for PostCorrect and PostError ITPC Results 
clear;clc;
%%%% get the data
savedir='D:\Project_EEG_CC\CC_Project_PostError\PostError_step2_Data_NEW\';   % Main Data are here
cd(savedir);
load('D:\Project_EEG_CC\CC_Project_PostError\ONOFF.mat','ONOFF')
load('D:\Project_EEG_CC\CC_Project_PostError\BV_Chanlocs_60.mat');

PDsx=[801:811,813:829];        %  824 S2 CC is bad (mange here)
CTLsx=[8010,8070,8060,890:914];  %  911 S1 CC is bad (mange here)
BigN=size(ONOFF,1)./2;
% load PD OFF and ON data
row=1;
for mi=1:size(ONOFF,1)

    disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==824 && ONOFF(mi,2)==2  % Bad EEG
        ITPC=NaN(size_ITPC); 
    else
        load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
        size_ITPC=size(ITPC); 
    end
        
    if ONOFF(mi,3)==1 % ON
        ON.ID(floor(row))=ONOFF(mi,1);
        ON.Session(floor(row))=ONOFF(mi,2);
        ON.ITPC(floor(row),:,:,:,:,:)=ITPC;
               
    elseif ONOFF(mi,3)==0 % OFF
        OFF.ID(floor(row))=ONOFF(mi,1);
        OFF.Session(floor(row))=ONOFF(mi,2);
        OFF.ITPC(floor(row),:,:,:,:,:)=ITPC;
    end
    row=row+.5;
    clear ITPC;
    
end
% load control data
row=1;
for CTLi=CTLsx;
    
    disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==911 && ONOFF(mi,2)==1  % Bad EEG
        ITPC=NaN(size_ITPC);
    else
        load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    end
    
    CTL.ID(floor(row))=CTLi;
    CTL.Session(floor(row))=1;
    CTL.ITPC(floor(row),:,:,:,:,:)=ITPC;
    row=row+1;
    clear ERPs VECTOR Model_Output POWER ITPC;
end
CtlN=row-1;

% ##########################################
tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
CHANI=21;  % channel Cz
EVENT=2;  % CUE, RESP

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control

OFF_Conf2 = OFF.ITPC(:,CHANI,:,:,2,EVENT);     OFF_Conf1 = OFF.ITPC(:,CHANI,:,:,1,EVENT);
ON_Conf2 =   ON.ITPC(:,CHANI,:,:,2,EVENT);     ON_Conf1 =   ON.ITPC(:,CHANI,:,:,1,EVENT); 
CTL_Conf2 = CTL.ITPC(:,CHANI,:,:,2,EVENT);     CTL_Conf1 = CTL.ITPC(:,CHANI,:,:,1,EVENT); 

OFF_Conf21 = squeeze( nanmean(OFF_Conf2,1)) - squeeze( nanmean(OFF_Conf1,1));
ON_Conf21 =  squeeze( nanmean(ON_Conf2,1))  - squeeze( nanmean(ON_Conf1,1));
CTL_Conf21 = squeeze( nanmean(CTL_Conf2,1)) - squeeze( nanmean(CTL_Conf1,1));    


% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% CONTOL and PD ON %%%%%%%%%%%%%%%%%%%%
%%% CTL-PD ON
subplot(337);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf1)) - squeeze(nanmean(ON_Conf1)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D (squeeze(ON_Conf1), squeeze(CTL_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P ;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('PEC:CTL-ON (Post-Correct)');hold off; colormap jet

subplot(338);
imagesc( tx2disp,[], squeeze(nanmean(CTL_Conf2)) - squeeze(nanmean(ON_Conf2)) ); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D( squeeze(ON_Conf2), squeeze(CTL_Conf2), 'between' ) ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));title('PEC:CTL-ON (Post-Error)');hold off; colormap jet 

subplot(339);
imagesc(tx2disp,[], CTL_Conf21 - ON_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(ON_Conf2)- squeeze(ON_Conf1), squeeze(CTL_Conf2)- squeeze(CTL_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
set(gca,'clim',[-0.2 0.2],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('PEC:Control - PD ON (PostError-PostCorrect)'); colormap jet

suptitle ('ITPC: Control - PD ON');