function Classify_Scalars_SVM_MatchSubjs(InData,TITLE,MATCHTOEEG,vars,Xval) % Nomenclature is that 'A' TARGETS are classified (1's) from 'B' STANDARDS (0's) Big_A=InData(InData(:,1)==1,vars) ; % PD Big_B=InData(InData(:,1)~=1,vars) ; % CTL % Align them so each CTL matches each PD Big_B=Big_B(MATCHTOEEG',:); for rep = 1:28 if rem(rep,100)==0 ['SVM ' Xval ' ' TITLE ' ' num2str(rep)] end AllData = cat(1,Big_A,Big_B); GROUPS = [ones(1,size(Big_A,1)),zeros(1,size(Big_B,1))]; Size_Per_Set = size(AllData,1) .* .5; % Cross Validate testsize = 1; trainsize = Size_Per_Set-testsize; % get shuffled trials for train set TrainBool = ones(1,Size_Per_Set); TrainBool(rep)=0; % get shuffled trials for validate set Test1Bool = zeros(1,Size_Per_Set); Test1Bool(rep)=1; % same for standards and targets TrainBool = [TrainBool TrainBool]; Test1Bool = [Test1Bool Test1Bool]; % Classify ****** Targets ****** % training set x_train = AllData(TrainBool==1,:); % normalize! x_mean = mean(x_train); x_std = std(x_train); x_train_norm = (x_train - repmat(x_mean,size(x_train,1),1)); % mean normalize x_train_norm = x_train_norm./repmat(x_std,size(x_train,1),1); y_train = GROUPS(TrainBool==1); % validate set xtstset1 = AllData(Test1Bool == 1,:); % normalize to train set xtstset1_norm = (xtstset1-repmat(x_mean,size(xtstset1,1),1)); xtstset1_norm = xtstset1_norm./ repmat(x_std,size(xtstset1,1),1); % normalize to trn data y_tstset1 = GROUPS(Test1Bool==1); % store normalizing constants. Important to normalize to that when applying % weights to a different data set later. norm{1}(rep,:) = x_mean; norm{2}(rep,:) = x_std; x_train = x_train_norm; x_test1 = xtstset1_norm; % ############# SVM ############# SVMModel = fitcsvm(x_train,y_train','KernelFunction','linear'); [label,score] = predict(SVMModel,x_test1); acc=label==y_tstset1'; Aset_acc(rep,:)=acc(1:length(acc)/2); Bset_acc(rep,:)=acc((length(acc)/2)+1:end); Aset_score(rep,:)=score(1,1); Bset_score(rep,:)=score(2,1); % ############# SVM ############# clearvars -except Aset_acc Bset_acc Aset_score Bset_score rep Big_A Big_B InData Xval TITLE iterations MATCHTOEEG end % Save save(['SVM_',TITLE,'_',Xval,'_iter28','.mat'],'Aset_acc','Bset_acc','Aset_score','Bset_score');