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% eegplotsold() - display data in a clinical format without scrolling
%
% Usage:
% >> eegplotsold(data, srate, 'chanfile', 'title', ...
% yscaling, epoch, linecolor,xstart,vertmark)
%
% Inputs:
% data - data matrix (chans,frames)
% srate - EEG sampling rate in Hz (0 -> 256 Hz)
% 'chanfile' - file of channel info, topoplot() style, (0 -> chan nos)
% 'title' - plot title string {0 -> 'eegplotsold()'}
% yscaling - initial y scaling factor (0 -> 300)
% epoch - how many seconds to display in window (0 -> 10 sec)
% linecolor - color of eeg (0 -> 'y')
% xstart - start time of the data {0 -> 0}
% vertmark - vector of frames to mark with vertical lines {0 -> none}
%
% Author: Colin Humphries, CNL, Salk Institute, La Jolla, 3/97
%
% See also: eegplot(), eegplotold(), eegplotgold()
% Copyright (C) Colin Humphries, CNL, Salk Institute 3/97 from eegplotold()
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software
% Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
% 05-01-97 added xstart argument -sm
% 05-20-97 added read of icadefs.m
% 06-12-97 EPOCH -> epoch line 71 below -sm
% 8-10-97 Clarified chanfile type -sm
% 12-08-97 Added isstr(titleval) test -sm
% 02-09-98 legnth(data)->size(data,2) -sm
% 01-25-02 reformated help & license, added links -ad
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function y = eegplotsold(data, srate, channamefile, titleval, yscaling, epoch, linecolor,xstart,vertmark)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Define defaults
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
icadefs; % read MAXEEGPLOTCHANS, DEFAULT_SRATE, DEFAULT_EPOCH from icadefs.m
if nargin < 1
help eegplotsold % print usage message
PLOT_TIME = 10;
data = 0.5*randn(8,floor(DEFAULT_SRATE*PLOT_TIME*2));
titleval = ['eegplotsold() example - random noise']; % show example plot
end
[chans,frames] = size(data); %size of data matrix
% set initial spacing
DEFAULT_SPACING = max(max(data')-min(data'));
% spacing_var/20 = microvolts/millimeter with 21 channels
% for n channels: 21/n * spacing_var/20 = microvolts/mm
% for clinical data.
DEFAULT_PLOTTIME = 10; % default 10 seconds per window
DEFAULT_TITLE = 'eegplotsold()';
errorcode=0; % initialize error indicator
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Allow for different numbers of arguments
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
if nargin < 9,
vertmark = 0;
end
if nargin < 8,
xstart = 0;
end
if nargin < 7
linecolor = 'y'; % DEFAULT LINECOLOR
end
if linecolor == 0,
linecolor = 'y'; % DEFAULT LINECOLOR
end
if nargin < 6
PLOT_TIME = 0;
else
PLOT_TIME = epoch;
end
if nargin < 5
spacing_var = 0;
else
spacing_var = yscaling;
end
if spacing_var == 0
spacing_var = DEFAULT_SPACING;
end
if nargin < 4
titleval = DEFAULT_TITLE;
end
if ~isstr(titleval)
if titleval == 0
titleval = DEFAULT_TITLE;
else
help eegplotsold
return
end
end
if nargin < 3
channamefile = 0;
end
if nargin < 2
srate = DEFAULT_SRATE;
end
if srate == 0,
srate = DEFAULT_SRATE;
end;
if PLOT_TIME == 0
PLOT_TIME = ceil(frames/srate);
if PLOT_TIME > DEFAULT_EPOCH
PLOT_TIME = DEFAULT_EPOCH;
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Define internal variables
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
maxtime = frames / srate; %size of matrix in seconds
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Read the channel names
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
if channamefile ~=0, % read file of channel names
chid = fopen(channamefile,'r');
if chid <3,
fprintf('plotdata: cannot open file %s.\n',channamefile);
errorcode=2;
channamefile = 0;
else
% fprintf('Chan info file %s opened\n',channamefile);
end;
if errorcode==0,
channames = fscanf(chid,'%d %f %f %s',[7 MAXEEGPLOTCHANS]);
channames = channames';
channames = setstr(channames(:,4:7)); % convert ints to chars
[r c] = size(channames);
for i=1:r
for j=1:c
if channames(i,j)=='.',
channames(i,j)=' '; % convert dots to spaces
end;
end;
end;
% fprintf('%d channel names read from file.\n',r);
if (r>chans)
fprintf('Using first %d names.\n',chans);
channames = channames(1:chans,:);
end;
if (r<chans)
fprintf('Only %d channel names read.\n',r);
end;
end;
end
if channamefile ==0, % plot channel numbers
channames = [];
for c=1:chans
if c<10,
numeric = [' ' int2str(c)]; % four-character fields
else
numeric = [' ' int2str(c)];
end
channames = [channames;numeric];
end;
end; % setting channames
channames = str2mat(channames, ' '); % add padding element to Y labels
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Make matrix of x-tick labels
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Xlab = num2str(0);
% for j = 1:1:PLOT_TIME
% Q = num2str(0+j);
% Xlab = str2mat(Xlab, Q);
% end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Set Graph Characteristics
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
hold on;
set (gca, 'xgrid', 'on') % Xaxis gridlines only
set (gca, 'GridLineStyle','-') % Solid grid lines
% set (gca, 'XTickLabel', Xlab) % Use Xlab for tick labels
% set (gca, 'XTick', 0*srate:1.0*srate:PLOT_TIME*srate)
set (gca, 'Box', 'on')
set (gca, 'Ytick', 0:spacing_var:chans*spacing_var) % ytick spacing on channels
set (gca, 'TickLength', [0.02 0.02])
title(titleval) % title is titleval
axis([xstart xstart+PLOT_TIME 0 (chans+1)*spacing_var]);
set (gca, 'YTickLabels', flipud(channames),'FontSize',14) % write channel names
% Matlab-5 requires YTickLabels
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Plot the selected EEG data epoch
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
xx = xstart:1/srate:xstart+PLOT_TIME-0.9/srate; % x-values
xx = xx(:,1:size(data,2));
for i = 1:chans
F = data(chans-i+1,:);
F = F - mean(F) + i*spacing_var; % add offset to y-values
plot (xx,F,'clipping','off','Color',linecolor); % channel plot with x-values
end
if xstart<0 & xstart+PLOT_TIME > 0
linetime = round(-xstart/srate);
line ([linetime linetime],[1e10,-1e10]);
end
if vertmark ~= 0,
for mark = vertmark,
linetime = xstart + (mark-1)/srate;
line ([linetime linetime],[-1e10,1e10],'Color','y','LineStyle',':');
end
end
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