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Datasets:
jalauer
/
Singh2020

Tags:
eeg
medical
clinical
classification
parkinson
pedaling
License:
Dataset card Files
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 Community
jalauer commited on
Commit
03a0748
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1 Parent(s): c975653

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+ Sampling Interval [µS]: 2000
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+
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+ --------
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206
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233
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235
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236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
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+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
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+ Amplifier
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+ actiCHamp Base Unit (5001)
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+ --- S/N 17050803 ---
249
+
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+ actiCHamp 32 CH Module
251
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+
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+
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257
+ ==============================
258
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259
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260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
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275
+ 17 10 Off Off
276
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277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
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289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
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297
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298
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299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
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302
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303
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304
+ 46 10 Off Off
305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
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318
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319
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320
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321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
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324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:08:58 :
329
+ Fp1: 14
330
+ Fz: 3
331
+ F3: 2
332
+ F7: 2
333
+ Aa: 0
334
+ FC5: 5
335
+ FC1: 6
336
+ C3: 9
337
+ T7: 9
338
+ TP9: 9
339
+ CP5: 13
340
+ CP1: 7
341
+ Pz: 6
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+ P3: 7
343
+ P7: 2
344
+ O1: 9
345
+ Oz: 10
346
+ O2: 2
347
+ P4: 4
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+ P8: 3
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+ TP10: 12
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+ CP6: 11
351
+ CP2: 4
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+ Cz: 1
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+ C4: 11
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+ T8: 9
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+ FT10: 8
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+ FC6: 16
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+ FC2: 2
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+ F4: 2
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+ F8: 1
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+ Fp2: 1
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+ AF7: 0
362
+ AF3: 4
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+ AFz: 2
364
+ F1: 13
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+ F5: 2
366
+ FT7: 6
367
+ FC3: 4
368
+ C1: 2
369
+ C5: 10
370
+ TP7: 10
371
+ CP3: 10
372
+ P1: 9
373
+ P5: 3
374
+ PO7: 15
375
+ Bb: 4
376
+ POz: 10
377
+ Cc: 2
378
+ PO8: 5
379
+ P6: 4
380
+ P2: 10
381
+ CPz: 1
382
+ CP4: 7
383
+ TP8: 15
384
+ C6: 17
385
+ C2: 1
386
+ FC4: 9
387
+ FT8: 10
388
+ F6: 1
389
+ AF8: 1
390
+ AF4: 2
391
+ F2: 1
392
+ FCz: 1
393
+ Gnd: 9
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+ [Coordinates]
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+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
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+
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+ [Comment]
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+ Pedaling
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+ BrainVision Recorder Professional - V. 1.21.0102
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+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
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176
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177
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178
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179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
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181
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182
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183
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184
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185
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186
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187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
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189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
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204
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205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
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210
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211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17050803 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 16101400 ---
252
+ --- Module 2 (5010): S/N 16101402 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 09:17:53 :
329
+ Fp1: 2
330
+ Fz: 3
331
+ F3: 2
332
+ F7: 2
333
+ Aa: 18
334
+ FC5: 6
335
+ FC1: 4
336
+ C3: 7
337
+ T7: 8
338
+ TP9: 6
339
+ CP5: 9
340
+ CP1: 10
341
+ Pz: 7
342
+ P3: 8
343
+ P7: 8
344
+ O1: 9
345
+ Oz: 5
346
+ O2: 9
347
+ P4: 5
348
+ P8: 8
349
+ TP10: 5
350
+ CP6: 5
351
+ CP2: 5
352
+ Cz: 4
353
+ C4: 16
354
+ T8: 5
355
+ FT10: 8
356
+ FC6: 9
357
+ FC2: 3
358
+ F4: 6
359
+ F8: 2
360
+ Fp2: 3
361
+ AF7: 2
362
+ AF3: 2
363
+ AFz: 0
364
+ F1: 3
365
+ F5: 2
366
+ FT7: 4
367
+ FC3: 5
368
+ C1: 5
369
+ C5: 9
370
+ TP7: 6
371
+ CP3: 10
372
+ P1: 6
373
+ P5: 9
374
+ PO7: 7
375
+ Bb: 9
376
+ POz: 6
377
+ Cc: 17
378
+ PO8: 8
379
+ P6: 6
380
+ P2: 7
381
+ CPz: 6
382
+ CP4: 7
383
+ TP8: 4
384
+ C6: 18
385
+ C2: 3
386
+ FC4: 9
387
+ FT8: 7
388
+ F6: 3
389
+ AF8: 3
390
+ AF4: 4
391
+ F2: 6
392
+ FCz: 2
393
+ Gnd: 0
raw_data/PD1259.vmrk ADDED
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+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
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+ ============================
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+ Sampling Rate [Hz]: 500
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+ Sampling Interval [µS]: 2000
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+ --------
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179
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
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231
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232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
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+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
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269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
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273
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274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
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277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
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280
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281
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282
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283
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284
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285
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286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
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289
+ 31 10 Off Off
290
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291
+ 33 10 Off Off
292
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293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
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298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
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313
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322
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368
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371
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372
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377
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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229
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232
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233
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234
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235
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236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
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262
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263
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264
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265
+ 7 10 Off Off
266
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267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
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278
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279
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280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
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295
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296
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297
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298
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299
+ 41 10 Off Off
300
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301
+ 43 10 Off Off
302
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303
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304
+ 46 10 Off Off
305
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306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
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309
+ 51 10 Off Off
310
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311
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312
+ 54 10 Off Off
313
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315
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316
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318
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319
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320
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321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 10:33:08 :
329
+ Fp1: 2
330
+ Fz: 0
331
+ F3: 1
332
+ F7: 2
333
+ Aa: 22
334
+ FC5: 15
335
+ FC1: 0
336
+ C3: 15
337
+ T7: 3
338
+ TP9: 2
339
+ CP5: 9
340
+ CP1: 2
341
+ Pz: 4
342
+ P3: 4
343
+ P7: 6
344
+ O1: 13
345
+ Oz: 7
346
+ O2: 23
347
+ P4: 2
348
+ P8: 43
349
+ TP10: 18
350
+ CP6: 17
351
+ CP2: 3
352
+ Cz: 7
353
+ C4: 8
354
+ T8: 15
355
+ FT10: 16
356
+ FC6: 25
357
+ FC2: 8
358
+ F4: 1
359
+ F8: 5
360
+ Fp2: 21
361
+ AF7: 2
362
+ AF3: 6
363
+ AFz: 8
364
+ F1: 0
365
+ F5: 3
366
+ FT7: 16
367
+ FC3: 1
368
+ C1: 5
369
+ C5: 7
370
+ TP7: 10
371
+ CP3: 1
372
+ P1: 7
373
+ P5: 4
374
+ PO7: 13
375
+ Bb: 21
376
+ POz: 7
377
+ Cc: 10
378
+ PO8: 24
379
+ P6: 31
380
+ P2: 2
381
+ CPz: 7
382
+ CP4: 15
383
+ TP8: 33
384
+ C6: 45
385
+ C2: 3
386
+ FC4: 2
387
+ FT8: 18
388
+ F6: 29
389
+ AF8: 1
390
+ AF4: 14
391
+ F2: 1
392
+ FCz: 3
393
+ Gnd: 2
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20
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22
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90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
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+ Ch1=1,-90,-72
93
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94
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95
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98
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99
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100
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101
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102
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103
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108
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113
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114
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115
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116
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117
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121
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126
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127
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128
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131
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132
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134
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135
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136
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137
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138
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139
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140
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141
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142
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147
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148
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152
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+ Pedaling
161
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163
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164
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165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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184
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185
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186
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187
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188
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189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
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198
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+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
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+ 2 10 Off Off
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287
+ 29 10 Off Off
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+ 33 10 Off Off
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+ 34 10 Off Off
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+ 35 10 Off Off
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295
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296
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+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:40:52 :
329
+ Fp1: 0
330
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331
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332
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334
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335
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336
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338
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339
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340
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
+ AF3: 2
363
+ AFz: 19
364
+ F1: 3
365
+ F5: 2
366
+ FT7: 20
367
+ FC3: 16
368
+ C1: 1
369
+ C5: 10
370
+ TP7: 3
371
+ CP3: 10
372
+ P1: 13
373
+ P5: 8
374
+ PO7: 5
375
+ Bb: 5
376
+ POz: 25
377
+ Cc: 16
378
+ PO8: 10
379
+ P6: 9
380
+ P2: 29
381
+ CPz: 41
382
+ CP4: 6
383
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384
+ C6: 22
385
+ C2: 3
386
+ FC4: 5
387
+ FT8: 3
388
+ F6: 10
389
+ AF8: 2
390
+ AF4: 8
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+ F2: 6
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+ FCz: 5
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+ Gnd: 1
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+ [Coordinates]
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+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
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153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 10:26:43 :
329
+ Fp1: 9
330
+ Fz: 7
331
+ F3: 6
332
+ F7: 16
333
+ Aa: 4
334
+ FC5: 2
335
+ FC1: 9
336
+ C3: 2
337
+ T7: 2
338
+ TP9: 4
339
+ CP5: 0
340
+ CP1: 0
341
+ Pz: 5
342
+ P3: 1
343
+ P7: 0
344
+ O1: 3
345
+ Oz: 2
346
+ O2: 3
347
+ P4: 2
348
+ P8: 5
349
+ TP10: 23
350
+ CP6: 0
351
+ CP2: 10
352
+ Cz: 7
353
+ C4: 10
354
+ T8: 6
355
+ FT10: 10
356
+ FC6: 7
357
+ FC2: 9
358
+ F4: 3
359
+ F8: 18
360
+ Fp2: 4
361
+ AF7: 10
362
+ AF3: 13
363
+ AFz: 10
364
+ F1: 7
365
+ F5: 6
366
+ FT7: 2
367
+ FC3: 26
368
+ C1: 8
369
+ C5: 0
370
+ TP7: 5
371
+ CP3: 0
372
+ P1: 1
373
+ P5: 1
374
+ PO7: 0
375
+ Bb: 5
376
+ POz: 3
377
+ Cc: 2
378
+ PO8: 4
379
+ P6: 1
380
+ P2: 8
381
+ CPz: 15
382
+ CP4: 0
383
+ TP8: 12
384
+ C6: 16
385
+ C2: 2
386
+ FC4: 24
387
+ FT8: 7
388
+ F6: 16
389
+ AF8: 11
390
+ AF4: 9
391
+ F2: 2
392
+ FCz: 8
393
+ Gnd: 3
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+ Brain Vision Data Exchange Marker File, Version 1.0
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+
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+ [Marker Infos]
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+ ; Each entry: Mk<Marker number>=<Type>,<Description>,<Position in data points>,
9
+ ; <Size in data points>, <Channel number (0 = marker is related to all channels)>
10
+ ; Fields are delimited by commas, some fields might be omitted (empty).
11
+ ; Commas in type or description text are coded as "\1".
12
+ Mk1=New Segment,,1,1,0,20180824123541579939
13
+ Mk2=Stimulus,S 1,1432,1,0
14
+ Mk3=Stimulus,S 2,2398,1,0
15
+ Mk4=Stimulus,S 2,4739,1,0
16
+ Mk5=Stimulus,S 1,6251,1,0
17
+ Mk6=Stimulus,S 2,6807,1,0
18
+ Mk7=Stimulus,S 1,8322,1,0
19
+ Mk8=Stimulus,S 2,8971,1,0
20
+ Mk9=Stimulus,S 1,12787,1,0
21
+ Mk10=Stimulus,S 2,13780,1,0
22
+ Mk11=Stimulus,S 1,15294,1,0
23
+ Mk12=Stimulus,S 2,16289,1,0
24
+ Mk13=Stimulus,S 1,17802,1,0
25
+ Mk14=Stimulus,S 2,18393,1,0
26
+ Mk15=Stimulus,S 2,20909,1,0
27
+ Mk16=Stimulus,S 1,22425,1,0
28
+ Mk17=Stimulus,S 2,23418,1,0
29
+ Mk18=Stimulus,S 1,24933,1,0
30
+ Mk19=Stimulus,S 2,25683,1,0
31
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32
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33
+ Mk22=Stimulus,S 1,29623,1,0
34
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35
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36
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37
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38
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39
+ Mk28=Stimulus,S 1,38862,1,0
40
+ Mk29=Stimulus,S 1,41369,1,0
41
+ Mk30=Stimulus,S 2,42203,1,0
42
+ Mk31=Stimulus,S 1,43719,1,0
43
+ Mk32=Stimulus,S 2,44243,1,0
44
+ Mk33=Stimulus,S 1,48209,1,0
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46
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47
+ Mk36=Stimulus,S 1,53065,1,0
48
+ Mk37=Stimulus,S 2,53957,1,0
49
+ Mk38=Stimulus,S 1,55473,1,0
50
+ Mk39=Stimulus,S 2,56356,1,0
51
+ Mk40=Stimulus,S 1,57864,1,0
52
+ Mk41=Stimulus,S 2,58572,1,0
53
+ Mk42=Stimulus,S 1,60088,1,0
54
+ Mk43=Stimulus,S 2,60922,1,0
55
+ Mk44=Stimulus,S 1,62437,1,0
56
+ Mk45=Stimulus,S 2,63029,1,0
57
+ Mk46=Stimulus,S 1,64545,1,0
58
+ Mk47=Stimulus,S 2,65404,1,0
59
+ Mk48=Stimulus,S 1,66919,1,0
60
+ Mk49=Stimulus,S 2,67444,1,0
61
+ Mk50=Stimulus,S 1,68960,1,0
62
+ Mk51=Stimulus,S 2,69610,1,0
63
+ Mk52=Stimulus,S 1,74550,1,0
64
+ Mk53=Stimulus,S 2,75083,1,0
65
+ Mk54=Stimulus,S 1,78674,1,0
66
+ Mk55=Stimulus,S 1,81115,1,0
67
+ Mk56=Stimulus,S 2,81973,1,0
68
+ Mk57=Stimulus,S 1,83489,1,0
69
+ Mk58=Stimulus,S 2,84155,1,0
70
+ Mk59=Stimulus,S 1,88171,1,0
71
+ Mk60=Stimulus,S 1,90212,1,0
72
+ Mk61=Stimulus,S 2,90937,1,0
73
+ Mk62=Stimulus,S 1,92453,1,0
74
+ Mk63=Stimulus,S 2,93153,1,0
75
+ Mk64=Stimulus,S 1,94669,1,0
76
+ Mk65=Stimulus,S 2,95560,1,0
77
+ Mk66=Stimulus,S 1,97076,1,0
78
+ Mk67=Stimulus,S 2,97984,1,0
79
+ Mk68=Stimulus,S 2,100101,1,0
80
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81
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82
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83
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84
+ Mk73=Stimulus,S 1,108481,1,0
85
+ Mk74=Stimulus,S 2,109347,1,0
86
+ Mk75=Stimulus,S 2,111747,1,0
87
+ Mk76=Stimulus,S 1,113263,1,0
88
+ Mk77=Stimulus,S 1,115429,1,0
89
+ Mk78=Stimulus,S 2,116278,1,0
90
+ Mk79=Stimulus,S 2,118628,1,0
91
+ Mk80=Stimulus,S 1,120144,1,0
92
+ Mk81=Stimulus,S 2,120735,1,0
93
+ Mk82=Stimulus,S 1,124334,1,0
94
+ Mk83=Stimulus,S 2,125092,1,0
95
+ Mk84=Stimulus,S 1,126608,1,0
96
+ Mk85=Stimulus,S 1,129116,1,0
97
+ Mk86=Stimulus,S 2,129799,1,0
98
+ Mk87=Stimulus,S 1,131315,1,0
99
+ Mk88=Stimulus,S 2,132115,1,0
100
+ Mk89=Stimulus,S 1,133631,1,0
101
+ Mk90=Stimulus,S 2,134256,1,0
102
+ Mk91=Stimulus,S 1,135772,1,0
103
+ Mk92=Stimulus,S 2,136655,1,0
104
+ Mk93=Stimulus,S 1,138171,1,0
105
+ Mk94=Stimulus,S 2,138805,1,0
106
+ Mk95=Stimulus,S 1,140321,1,0
107
+ Mk96=Stimulus,S 2,141079,1,0
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1
+ Brain Vision Data Exchange Header File Version 1.0
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8
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9
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10
+ DataOrientation=MULTIPLEXED
11
+ NumberOfChannels=66
12
+ ; Sampling interval in microseconds
13
+ SamplingInterval=2000
14
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15
+ [Binary Infos]
16
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18
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19
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20
+ ; <Resolution in "Unit">,<Unit>, Future extensions..
21
+ ; Fields are delimited by commas, some fields might be omitted (empty).
22
+ ; Commas in channel names are coded as "\1".
23
+ Ch1=Fp1,,0.0488281,µV
24
+ Ch2=Fz,,0.0488281,µV
25
+ Ch3=F3,,0.0488281,µV
26
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27
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28
+ Ch6=FC5,,0.0488281,µV
29
+ Ch7=FC1,,0.0488281,µV
30
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31
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32
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33
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34
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35
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36
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38
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39
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40
+ Ch18=P4,,0.0488281,µV
41
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42
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43
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44
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45
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46
+ Ch24=C4,,0.0488281,µV
47
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48
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49
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50
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51
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52
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53
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54
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56
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57
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58
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59
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60
+ Ch38=FC3,,0.0488281,µV
61
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62
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63
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64
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65
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66
+ Ch44=P5,,0.0488281,µV
67
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68
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69
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70
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71
+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
73
+ Ch51=P2,,0.0488281,µV
74
+ Ch52=CPz,,0.0488281,µV
75
+ Ch53=CP4,,0.0488281,µV
76
+ Ch54=TP8,,0.0488281,µV
77
+ Ch55=C6,,0.0488281,µV
78
+ Ch56=C2,,0.0488281,µV
79
+ Ch57=FC4,,0.0488281,µV
80
+ Ch58=FT8,,0.0488281,µV
81
+ Ch59=F6,,0.0488281,µV
82
+ Ch60=AF8,,0.0488281,µV
83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
87
+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
89
+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
92
+ Ch1=1,-90,-72
93
+ Ch2=1,45,90
94
+ Ch3=1,-60,-51
95
+ Ch4=1,-90,-36
96
+ Ch5=1,112,-90
97
+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
105
+ Ch14=1,-90,36
106
+ Ch15=1,-90,72
107
+ Ch16=1,90,-90
108
+ Ch17=1,90,-72
109
+ Ch18=1,60,-51
110
+ Ch19=1,90,-36
111
+ Ch20=1,113,-18
112
+ Ch21=1,69,-21
113
+ Ch22=1,31,-46
114
+ Ch23=1,0,0
115
+ Ch24=1,45,0
116
+ Ch25=1,90,0
117
+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
124
+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
+ Ch51=1,49,-68
143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:54:41 :
329
+ Fp1: 4
330
+ Fz: 3
331
+ F3: 2
332
+ F7: 4
333
+ Aa: 2
334
+ FC5: 11
335
+ FC1: 1
336
+ C3: 5
337
+ T7: 12
338
+ TP9: 20
339
+ CP5: 14
340
+ CP1: 2
341
+ Pz: 3
342
+ P3: 6
343
+ P7: 10
344
+ O1: 9
345
+ Oz: 8
346
+ O2: 5
347
+ P4: 6
348
+ P8: 1
349
+ TP10: 2
350
+ CP6: 1
351
+ CP2: 2
352
+ Cz: 2
353
+ C4: 4
354
+ T8: 6
355
+ FT10: 9
356
+ FC6: 6
357
+ FC2: 8
358
+ F4: 12
359
+ F8: 5
360
+ Fp2: 6
361
+ AF7: 7
362
+ AF3: 8
363
+ AFz: 7
364
+ F1: 3
365
+ F5: 2
366
+ FT7: 12
367
+ FC3: 7
368
+ C1: 2
369
+ C5: 16
370
+ TP7: 10
371
+ CP3: 4
372
+ P1: 4
373
+ P5: 8
374
+ PO7: 10
375
+ Bb: 6
376
+ POz: 7
377
+ Cc: 2
378
+ PO8: 6
379
+ P6: 1
380
+ P2: 3
381
+ CPz: 1
382
+ CP4: 2
383
+ TP8: 1
384
+ C6: 3
385
+ C2: 4
386
+ FC4: 5
387
+ FT8: 7
388
+ F6: 5
389
+ AF8: 9
390
+ AF4: 12
391
+ F2: 10
392
+ FCz: 2
393
+ Gnd: 4
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69
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+ Ch42=CP3,,0.0488281,µV
65
+ Ch43=P1,,0.0488281,µV
66
+ Ch44=P5,,0.0488281,µV
67
+ Ch45=PO7,,0.0488281,µV
68
+ Ch46=Bb,,0.0488281,µV
69
+ Ch47=POz,,0.0488281,µV
70
+ Ch48=Cc,,0.0488281,µV
71
+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
73
+ Ch51=P2,,0.0488281,µV
74
+ Ch52=CPz,,0.0488281,µV
75
+ Ch53=CP4,,0.0488281,µV
76
+ Ch54=TP8,,0.0488281,µV
77
+ Ch55=C6,,0.0488281,µV
78
+ Ch56=C2,,0.0488281,µV
79
+ Ch57=FC4,,0.0488281,µV
80
+ Ch58=FT8,,0.0488281,µV
81
+ Ch59=F6,,0.0488281,µV
82
+ Ch60=AF8,,0.0488281,µV
83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
87
+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
89
+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
92
+ Ch1=1,-90,-72
93
+ Ch2=1,45,90
94
+ Ch3=1,-60,-51
95
+ Ch4=1,-90,-36
96
+ Ch5=1,112,-90
97
+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
105
+ Ch14=1,-90,36
106
+ Ch15=1,-90,72
107
+ Ch16=1,90,-90
108
+ Ch17=1,90,-72
109
+ Ch18=1,60,-51
110
+ Ch19=1,90,-36
111
+ Ch20=1,113,-18
112
+ Ch21=1,69,-21
113
+ Ch22=1,31,-46
114
+ Ch23=1,0,0
115
+ Ch24=1,45,0
116
+ Ch25=1,90,0
117
+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
124
+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
+ Ch51=1,49,-68
143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
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176
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177
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178
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179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
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181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
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183
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184
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185
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186
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187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
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222
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223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:53:53 :
329
+ Fp1: 2
330
+ Fz: 2
331
+ F3: 3
332
+ F7: 5
333
+ Aa: 13
334
+ FC5: 6
335
+ FC1: 1
336
+ C3: 4
337
+ T7: 16
338
+ TP9: 11
339
+ CP5: 11
340
+ CP1: 1
341
+ Pz: 3
342
+ P3: 1
343
+ P7: 3
344
+ O1: 3
345
+ Oz: 9
346
+ O2: 7
347
+ P4: 2
348
+ P8: 3
349
+ TP10: 13
350
+ CP6: 8
351
+ CP2: 5
352
+ Cz: 2
353
+ C4: 7
354
+ T8: 9
355
+ FT10: 8
356
+ FC6: 7
357
+ FC2: 5
358
+ F4: 11
359
+ F8: 13
360
+ Fp2: 4
361
+ AF7: 3
362
+ AF3: 4
363
+ AFz: 11
364
+ F1: 1
365
+ F5: 3
366
+ FT7: 4
367
+ FC3: 2
368
+ C1: 2
369
+ C5: 5
370
+ TP7: 12
371
+ CP3: 6
372
+ P1: 2
373
+ P5: 3
374
+ PO7: 1
375
+ Bb: 15
376
+ POz: 9
377
+ Cc: 12
378
+ PO8: 3
379
+ P6: 2
380
+ P2: 3
381
+ CPz: 0
382
+ CP4: 10
383
+ TP8: 1
384
+ C6: 8
385
+ C2: 4
386
+ FC4: 10
387
+ FT8: 7
388
+ F6: 6
389
+ AF8: 6
390
+ AF4: 5
391
+ F2: 8
392
+ FCz: 8
393
+ Gnd: 7
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+ Ch4=F7,,0.0488281,µV
27
+ Ch5=Aa,,0.0488281,µV
28
+ Ch6=FC5,,0.0488281,µV
29
+ Ch7=FC1,,0.0488281,µV
30
+ Ch8=C3,,0.0488281,µV
31
+ Ch9=T7,,0.0488281,µV
32
+ Ch10=TP9,,0.0488281,µV
33
+ Ch11=CP5,,0.0488281,µV
34
+ Ch12=CP1,,0.0488281,µV
35
+ Ch13=P3,,0.0488281,µV
36
+ Ch14=P7,,0.0488281,µV
37
+ Ch15=O1,,0.0488281,µV
38
+ Ch16=Oz,,0.0488281,µV
39
+ Ch17=O2,,0.0488281,µV
40
+ Ch18=P4,,0.0488281,µV
41
+ Ch19=P8,,0.0488281,µV
42
+ Ch20=TP10,,0.0488281,µV
43
+ Ch21=CP6,,0.0488281,µV
44
+ Ch22=CP2,,0.0488281,µV
45
+ Ch23=Cz,,0.0488281,µV
46
+ Ch24=C4,,0.0488281,µV
47
+ Ch25=T8,,0.0488281,µV
48
+ Ch26=FT10,,0.0488281,µV
49
+ Ch27=FC6,,0.0488281,µV
50
+ Ch28=FC2,,0.0488281,µV
51
+ Ch29=F4,,0.0488281,µV
52
+ Ch30=F8,,0.0488281,µV
53
+ Ch31=Fp2,,0.0488281,µV
54
+ Ch32=AF7,,0.0488281,µV
55
+ Ch33=AF3,,0.0488281,µV
56
+ Ch34=AFz,,0.0488281,µV
57
+ Ch35=F1,,0.0488281,µV
58
+ Ch36=F5,,0.0488281,µV
59
+ Ch37=FT7,,0.0488281,µV
60
+ Ch38=FC3,,0.0488281,µV
61
+ Ch39=C1,,0.0488281,µV
62
+ Ch40=C5,,0.0488281,µV
63
+ Ch41=TP7,,0.0488281,µV
64
+ Ch42=CP3,,0.0488281,µV
65
+ Ch43=P1,,0.0488281,µV
66
+ Ch44=P5,,0.0488281,µV
67
+ Ch45=PO7,,0.0488281,µV
68
+ Ch46=Bb,,0.0488281,µV
69
+ Ch47=POz,,0.0488281,µV
70
+ Ch48=Cc,,0.0488281,µV
71
+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
73
+ Ch51=P2,,0.0488281,µV
74
+ Ch52=CPz,,0.0488281,µV
75
+ Ch53=CP4,,0.0488281,µV
76
+ Ch54=TP8,,0.0488281,µV
77
+ Ch55=C6,,0.0488281,µV
78
+ Ch56=C2,,0.0488281,µV
79
+ Ch57=FC4,,0.0488281,µV
80
+ Ch58=FT8,,0.0488281,µV
81
+ Ch59=F6,,0.0488281,µV
82
+ Ch60=AF8,,0.0488281,µV
83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
87
+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
89
+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
92
+ Ch1=1,-90,-72
93
+ Ch2=1,45,90
94
+ Ch3=1,-60,-51
95
+ Ch4=1,-90,-36
96
+ Ch5=1,112,-90
97
+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
105
+ Ch14=1,-90,36
106
+ Ch15=1,-90,72
107
+ Ch16=1,90,-90
108
+ Ch17=1,90,-72
109
+ Ch18=1,60,-51
110
+ Ch19=1,90,-36
111
+ Ch20=1,113,-18
112
+ Ch21=1,69,-21
113
+ Ch22=1,31,-46
114
+ Ch23=1,0,0
115
+ Ch24=1,45,0
116
+ Ch25=1,90,0
117
+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
124
+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
+ Ch51=1,49,-68
143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling task
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:09:55 :
329
+ Fp1: not connected
330
+ Fz: not connected
331
+ F3: not connected
332
+ F7: not connected
333
+ Aa: not connected
334
+ FC5: not connected
335
+ FC1: not connected
336
+ C3: not connected
337
+ T7: not connected
338
+ TP9: not connected
339
+ CP5: not connected
340
+ CP1: not connected
341
+ Pz: not connected
342
+ P3: not connected
343
+ P7: not connected
344
+ O1: not connected
345
+ Oz: not connected
346
+ O2: not connected
347
+ P4: not connected
348
+ P8: not connected
349
+ TP10: not connected
350
+ CP6: not connected
351
+ CP2: not connected
352
+ Cz: not connected
353
+ C4: not connected
354
+ T8: not connected
355
+ FT10: not connected
356
+ FC6: not connected
357
+ FC2: not connected
358
+ F4: not connected
359
+ F8: not connected
360
+ Fp2: not connected
361
+ AF7: not connected
362
+ AF3: not connected
363
+ AFz: not connected
364
+ F1: not connected
365
+ F5: not connected
366
+ FT7: not connected
367
+ FC3: not connected
368
+ C1: not connected
369
+ C5: not connected
370
+ TP7: not connected
371
+ CP3: not connected
372
+ P1: not connected
373
+ P5: not connected
374
+ PO7: not connected
375
+ Bb: not connected
376
+ POz: not connected
377
+ Cc: not connected
378
+ PO8: not connected
379
+ P6: not connected
380
+ P2: not connected
381
+ CPz: not connected
382
+ CP4: not connected
383
+ TP8: not connected
384
+ C6: not connected
385
+ C2: not connected
386
+ FC4: not connected
387
+ FT8: not connected
388
+ F6: not connected
389
+ AF8: not connected
390
+ AF4: not connected
391
+ F2: not connected
392
+ FCz: not connected
393
+ Gnd: not connected
raw_data/PD1349.vmrk ADDED
@@ -0,0 +1,129 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Brain Vision Data Exchange Marker File, Version 1.0
2
+
3
+ [Common Infos]
4
+ Codepage=UTF-8
5
+ DataFile=PD1349.eeg
6
+
7
+ [Marker Infos]
8
+ ; Each entry: Mk<Marker number>=<Type>,<Description>,<Position in data points>,
9
+ ; <Size in data points>, <Channel number (0 = marker is related to all channels)>
10
+ ; Fields are delimited by commas, some fields might be omitted (empty).
11
+ ; Commas in type or description text are coded as "\1".
12
+ Mk1=New Segment,,1,1,0,20180911131852040342
13
+ Mk2=New Segment,,1611,1,0,20180911131901480469
14
+ Mk3=New Segment,,2591,1,0,20180911132027701627
15
+ Mk4=Stimulus,S 1,20217,1,0
16
+ Mk5=Stimulus,S 1,22450,1,0
17
+ Mk6=Stimulus,S 2,23136,1,0
18
+ Mk7=Stimulus,S 1,24643,1,0
19
+ Mk8=Stimulus,S 2,25409,1,0
20
+ Mk9=Stimulus,S 1,26915,1,0
21
+ Mk10=Stimulus,S 2,27521,1,0
22
+ Mk11=Stimulus,S 1,29028,1,0
23
+ Mk12=Stimulus,S 2,29874,1,0
24
+ Mk13=Stimulus,S 1,31381,1,0
25
+ Mk14=Stimulus,S 2,32313,1,0
26
+ Mk15=Stimulus,S 1,33820,1,0
27
+ Mk16=Stimulus,S 2,34713,1,0
28
+ Mk17=Stimulus,S 1,36219,1,0
29
+ Mk18=Stimulus,S 2,36858,1,0
30
+ Mk19=Stimulus,S 1,38365,1,0
31
+ Mk20=Stimulus,S 2,39291,1,0
32
+ Mk21=Stimulus,S 1,40798,1,0
33
+ Mk22=Stimulus,S 2,41537,1,0
34
+ Mk23=Stimulus,S 1,43044,1,0
35
+ Mk24=Stimulus,S 2,43903,1,0
36
+ Mk25=Stimulus,S 1,45409,1,0
37
+ Mk26=Stimulus,S 2,46136,1,0
38
+ Mk27=Stimulus,S 1,47642,1,0
39
+ Mk28=Stimulus,S 2,48241,1,0
40
+ Mk29=Stimulus,S 1,49748,1,0
41
+ Mk30=Stimulus,S 2,50748,1,0
42
+ Mk31=Stimulus,S 1,52254,1,0
43
+ Mk32=Stimulus,S 2,52907,1,0
44
+ Mk33=Stimulus,S 1,54413,1,0
45
+ Mk34=Stimulus,S 2,55386,1,0
46
+ Mk35=Stimulus,S 1,56893,1,0
47
+ Mk36=Stimulus,S 2,57412,1,0
48
+ Mk37=Stimulus,S 1,58919,1,0
49
+ Mk38=Stimulus,S 2,59631,1,0
50
+ Mk39=Stimulus,S 1,61138,1,0
51
+ Mk40=Stimulus,S 1,63631,1,0
52
+ Mk41=Stimulus,S 2,64516,1,0
53
+ Mk42=Stimulus,S 1,66023,1,0
54
+ Mk43=Stimulus,S 2,66716,1,0
55
+ Mk44=Stimulus,S 1,68222,1,0
56
+ Mk45=Stimulus,S 2,68749,1,0
57
+ Mk46=Stimulus,S 1,70261,1,0
58
+ Mk47=Stimulus,S 2,71194,1,0
59
+ Mk48=Stimulus,S 1,72701,1,0
60
+ Mk49=Stimulus,S 2,73580,1,0
61
+ Mk50=Stimulus,S 1,75087,1,0
62
+ Mk51=Stimulus,S 2,75806,1,0
63
+ Mk52=Stimulus,S 1,77313,1,0
64
+ Mk53=Stimulus,S 2,77972,1,0
65
+ Mk54=Stimulus,S 1,79479,1,0
66
+ Mk55=Stimulus,S 2,80158,1,0
67
+ Mk56=Stimulus,S 1,81664,1,0
68
+ Mk57=Stimulus,S 1,83970,1,0
69
+ Mk58=Stimulus,S 1,86476,1,0
70
+ Mk59=Stimulus,S 2,87409,1,0
71
+ Mk60=Stimulus,S 1,93540,1,0
72
+ Mk61=Stimulus,S 1,95573,1,0
73
+ Mk62=Stimulus,S 2,96266,1,0
74
+ Mk63=Stimulus,S 1,97772,1,0
75
+ Mk64=Stimulus,S 2,98312,1,0
76
+ Mk65=Stimulus,S 1,99818,1,0
77
+ Mk66=Stimulus,S 2,100805,1,0
78
+ Mk67=Stimulus,S 1,102311,1,0
79
+ Mk68=Stimulus,S 2,103158,1,0
80
+ Mk69=Stimulus,S 1,104664,1,0
81
+ Mk70=Stimulus,S 2,105616,1,0
82
+ Mk71=Stimulus,S 1,107123,1,0
83
+ Mk72=Stimulus,S 2,107909,1,0
84
+ Mk73=Stimulus,S 1,109416,1,0
85
+ Mk74=Stimulus,S 2,110369,1,0
86
+ Mk75=Stimulus,S 1,111875,1,0
87
+ Mk76=Stimulus,S 2,112701,1,0
88
+ Mk77=Stimulus,S 1,114207,1,0
89
+ Mk78=Stimulus,S 2,115120,1,0
90
+ Mk79=Stimulus,S 1,116627,1,0
91
+ Mk80=Stimulus,S 2,117400,1,0
92
+ Mk81=Stimulus,S 1,118906,1,0
93
+ Mk82=Stimulus,S 2,119479,1,0
94
+ Mk83=Stimulus,S 1,120985,1,0
95
+ Mk84=Stimulus,S 2,121858,1,0
96
+ Mk85=Stimulus,S 1,123364,1,0
97
+ Mk86=Stimulus,S 2,124118,1,0
98
+ Mk87=Stimulus,S 1,125623,1,0
99
+ Mk88=Stimulus,S 2,126530,1,0
100
+ Mk89=Stimulus,S 1,128036,1,0
101
+ Mk90=Stimulus,S 2,128849,1,0
102
+ Mk91=Stimulus,S 1,130355,1,0
103
+ Mk92=Stimulus,S 2,131162,1,0
104
+ Mk93=Stimulus,S 1,132668,1,0
105
+ Mk94=Stimulus,S 2,133374,1,0
106
+ Mk95=Stimulus,S 1,134881,1,0
107
+ Mk96=Stimulus,S 2,135480,1,0
108
+ Mk97=Stimulus,S 1,136987,1,0
109
+ Mk98=Stimulus,S 2,137986,1,0
110
+ Mk99=Stimulus,S 1,139493,1,0
111
+ Mk100=Stimulus,S 2,140085,1,0
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+ ============================
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+ Number of channels: 66
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+ Sampling Rate [Hz]: 500
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+ Sampling Interval [µS]: 2000
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+
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+ --------
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+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
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189
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202
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203
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204
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205
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206
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223
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226
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229
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232
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234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
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+ Good Level [kOhms] = 10
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+ Bad Level [kOhms] = 50
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+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
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+
246
+ Amplifier
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+ actiCHamp Base Unit (5001)
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+ --- S/N 17060817 ---
249
+
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+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
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+
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+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
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260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
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298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
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318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 10:20:32 :
329
+ Fp1: 0
330
+ Fz: 1
331
+ F3: 2
332
+ F7: 5
333
+ Aa: 5
334
+ FC5: 13
335
+ FC1: 1
336
+ C3: 2
337
+ T7: 7
338
+ TP9: 9
339
+ CP5: 5
340
+ CP1: 11
341
+ Pz: 2
342
+ P3: 7
343
+ P7: 7
344
+ O1: 16
345
+ Oz: 6
346
+ O2: 2
347
+ P4: 5
348
+ P8: 4
349
+ TP10: 5
350
+ CP6: 3
351
+ CP2: 8
352
+ Cz: 3
353
+ C4: 1
354
+ T8: 1
355
+ FT10: 16
356
+ FC6: 2
357
+ FC2: 1
358
+ F4: 1
359
+ F8: 1
360
+ Fp2: 0
361
+ AF7: 1
362
+ AF3: 1
363
+ AFz: 2
364
+ F1: 0
365
+ F5: 3
366
+ FT7: 5
367
+ FC3: 3
368
+ C1: 3
369
+ C5: 12
370
+ TP7: 6
371
+ CP3: 15
372
+ P1: 3
373
+ P5: 7
374
+ PO7: 8
375
+ Bb: 15
376
+ POz: 5
377
+ Cc: 2
378
+ PO8: 5
379
+ P6: 3
380
+ P2: 11
381
+ CPz: 6
382
+ CP4: 3
383
+ TP8: 4
384
+ C6: 0
385
+ C2: 3
386
+ FC4: 1
387
+ FT8: 2
388
+ F6: 0
389
+ AF8: 0
390
+ AF4: 2
391
+ F2: 0
392
+ FCz: 2
393
+ Gnd: 0
raw_data/PD1359.vmrk ADDED
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+ ============================
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+ Number of channels: 66
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+ Sampling Rate [Hz]: 500
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+ Sampling Interval [µS]: 2000
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+
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+ Channels
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+ --------
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+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
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198
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201
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202
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203
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204
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205
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206
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207
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208
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209
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
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+ Good Level [kOhms] = 10
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+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
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+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
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+
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+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
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318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 14:20:02 :
329
+ Fp1: 8
330
+ Fz: 3
331
+ F3: 3
332
+ F7: 22
333
+ Aa: 5
334
+ FC5: 12
335
+ FC1: 3
336
+ C3: 1
337
+ T7: 11
338
+ TP9: 23
339
+ CP5: 18
340
+ CP1: 9
341
+ Pz: 13
342
+ P3: 15
343
+ P7: 6
344
+ O1: 4
345
+ Oz: 13
346
+ O2: 7
347
+ P4: 12
348
+ P8: 42
349
+ TP10: 16
350
+ CP6: 34
351
+ CP2: 6
352
+ Cz: 6
353
+ C4: 6
354
+ T8: 7
355
+ FT10: 2
356
+ FC6: 9
357
+ FC2: 22
358
+ F4: 2
359
+ F8: 4
360
+ Fp2: 3
361
+ AF7: 17
362
+ AF3: 10
363
+ AFz: 1
364
+ F1: 3
365
+ F5: 13
366
+ FT7: 38
367
+ FC3: 6
368
+ C1: 2
369
+ C5: 6
370
+ TP7: 22
371
+ CP3: 374
372
+ P1: 21
373
+ P5: 5
374
+ PO7: 4
375
+ Bb: 5
376
+ POz: 11
377
+ Cc: 6
378
+ PO8: 11
379
+ P6: 13
380
+ P2: 151
381
+ CPz: 14
382
+ CP4: 17
383
+ TP8: 15
384
+ C6: 18
385
+ C2: 6
386
+ FC4: 26
387
+ FT8: 3
388
+ F6: 3
389
+ AF8: 10
390
+ AF4: 7
391
+ F2: 3
392
+ FCz: 0
393
+ Gnd: 4
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+ Mk16=Stimulus,S 1,24174,1,0
28
+ Mk17=Stimulus,S 2,25164,1,0
29
+ Mk18=Stimulus,S 1,26672,1,0
30
+ Mk19=Stimulus,S 2,27430,1,0
31
+ Mk20=Stimulus,S 1,28938,1,0
32
+ Mk21=Stimulus,S 2,29846,1,0
33
+ Mk22=Stimulus,S 1,31354,1,0
34
+ Mk23=Stimulus,S 1,33445,1,0
35
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36
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37
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38
+ Mk27=Stimulus,S 1,38143,1,0
39
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40
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41
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42
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43
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48
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49
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53
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54
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55
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56
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57
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58
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59
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60
+ Mk49=Stimulus,S 1,66192,1,0
61
+ Mk50=Stimulus,S 2,67058,1,0
62
+ Mk51=Stimulus,S 1,68566,1,0
63
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64
+ Mk53=Stimulus,S 1,70607,1,0
65
+ Mk54=Stimulus,S 2,71257,1,0
66
+ Mk55=Stimulus,S 1,103313,1,0
67
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68
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69
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70
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71
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72
+ Mk61=Stimulus,S 1,112227,1,0
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74
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75
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76
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77
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79
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80
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81
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82
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83
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84
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85
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86
+ Mk75=Stimulus,S 2,128788,1,0
87
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88
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89
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90
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91
+ Mk80=Stimulus,S 1,134819,1,0
92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
+ Mk92=Stimulus,S 1,150897,1,0
104
+ Mk93=Stimulus,S 2,151463,1,0
105
+ Mk94=Stimulus,S 1,152972,1,0
106
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107
+ Mk96=Stimulus,S 1,155238,1,0
108
+ Mk97=Stimulus,S 2,156228,1,0
109
+ Mk98=Stimulus,S 2,158419,1,0
110
+ Mk99=Stimulus,S 1,159927,1,0
111
+ Mk100=Stimulus,S 2,160727,1,0
112
+ Mk101=Stimulus,S 1,162235,1,0
113
+ Mk102=Stimulus,S 2,162859,1,0
114
+ Mk103=Stimulus,S 2,167399,1,0
115
+ Mk104=Stimulus,S 1,168908,1,0
116
+ Mk105=Stimulus,S 2,169674,1,0
raw_data/PD1389.vhdr ADDED
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1
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+ Ch47=POz,,0.0488281,µV
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+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
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+ Ch52=CPz,,0.0488281,µV
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+ Ch54=TP8,,0.0488281,µV
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+ Ch55=C6,,0.0488281,µV
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+ Ch56=C2,,0.0488281,µV
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+ Ch57=FC4,,0.0488281,µV
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+ Ch58=FT8,,0.0488281,µV
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+ Ch59=F6,,0.0488281,µV
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83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
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+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
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+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
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+ Ch1=1,-90,-72
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+ Ch2=1,45,90
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+ Ch3=1,-60,-51
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+ Ch4=1,-90,-36
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+ Ch5=1,112,-90
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+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
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108
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+ Ch22=1,31,-46
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+ Ch23=1,0,0
115
+ Ch24=1,45,0
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+ Ch25=1,90,0
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+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
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+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
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143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 09:49:04 :
329
+ Fp1: 1
330
+ Fz: 7
331
+ F3: 10
332
+ F7: 2
333
+ Aa: 4
334
+ FC5: 5
335
+ FC1: 3
336
+ C3: 7
337
+ T7: 23
338
+ TP9: 10
339
+ CP5: 24
340
+ CP1: 3
341
+ Pz: 3
342
+ P3: 8
343
+ P7: 6
344
+ O1: 2
345
+ Oz: 0
346
+ O2: 3
347
+ P4: 1
348
+ P8: 2
349
+ TP10: 15
350
+ CP6: 5
351
+ CP2: 2
352
+ Cz: 1
353
+ C4: 8
354
+ T8: 6
355
+ FT10: 6
356
+ FC6: 7
357
+ FC2: 1
358
+ F4: 4
359
+ F8: 9
360
+ Fp2: 1
361
+ AF7: 0
362
+ AF3: 8
363
+ AFz: 9
364
+ F1: 4
365
+ F5: 12
366
+ FT7: 8
367
+ FC3: 2
368
+ C1: 12
369
+ C5: 7
370
+ TP7: 12
371
+ CP3: 4
372
+ P1: 2
373
+ P5: 7
374
+ PO7: 5
375
+ Bb: 26
376
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181
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
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231
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232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
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+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
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+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
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+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
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283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 09:34:31 :
329
+ Fp1: 2
330
+ Fz: 2
331
+ F3: 8
332
+ F7: 3
333
+ Aa: 9
334
+ FC5: 7
335
+ FC1: 4
336
+ C3: 10
337
+ T7: 11
338
+ TP9: 24
339
+ CP5: 12
340
+ CP1: 4
341
+ Pz: 3
342
+ P3: 8
343
+ P7: 6
344
+ O1: 6
345
+ Oz: 4
346
+ O2: 5
347
+ P4: 7
348
+ P8: 4
349
+ TP10: 19
350
+ CP6: 6
351
+ CP2: 6
352
+ Cz: 3
353
+ C4: 0
354
+ T8: 4
355
+ FT10: 3
356
+ FC6: 2
357
+ FC2: 2
358
+ F4: 3
359
+ F8: 3
360
+ Fp2: 1
361
+ AF7: 5
362
+ AF3: 7
363
+ AFz: 4
364
+ F1: 4
365
+ F5: 4
366
+ FT7: 12
367
+ FC3: 6
368
+ C1: 4
369
+ C5: 8
370
+ TP7: 20
371
+ CP3: 8
372
+ P1: 4
373
+ P5: 8
374
+ PO7: 4
375
+ Bb: 4
376
+ POz: 4
377
+ Cc: 8
378
+ PO8: 7
379
+ P6: 5
380
+ P2: 7
381
+ CPz: 1
382
+ CP4: 7
383
+ TP8: 6
384
+ C6: 9
385
+ C2: 6
386
+ FC4: 7
387
+ FT8: 8
388
+ F6: 2
389
+ AF8: 4
390
+ AF4: 4
391
+ F2: 5
392
+ FCz: 4
393
+ Gnd: 2
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67
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68
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69
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70
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71
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72
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73
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74
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76
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79
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83
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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102
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+ Mk92=Stimulus,S 1,144611,1,0
104
+ Mk93=Stimulus,S 2,145377,1,0
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1
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+ DataOrientation=MULTIPLEXED
11
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12
+ ; Sampling interval in microseconds
13
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14
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18
+ [Channel Infos]
19
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20
+ ; <Resolution in "Unit">,<Unit>, Future extensions..
21
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22
+ ; Commas in channel names are coded as "\1".
23
+ Ch1=Fp1,,0.0488281,µV
24
+ Ch2=Fz,,0.0488281,µV
25
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26
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27
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28
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32
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34
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35
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36
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38
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40
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42
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45
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46
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47
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48
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49
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50
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51
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52
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53
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54
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55
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56
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57
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58
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59
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60
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61
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62
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63
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64
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65
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66
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67
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68
+ Ch46=Bb,,0.0488281,µV
69
+ Ch47=POz,,0.0488281,µV
70
+ Ch48=Cc,,0.0488281,µV
71
+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
73
+ Ch51=P2,,0.0488281,µV
74
+ Ch52=CPz,,0.0488281,µV
75
+ Ch53=CP4,,0.0488281,µV
76
+ Ch54=TP8,,0.0488281,µV
77
+ Ch55=C6,,0.0488281,µV
78
+ Ch56=C2,,0.0488281,µV
79
+ Ch57=FC4,,0.0488281,µV
80
+ Ch58=FT8,,0.0488281,µV
81
+ Ch59=F6,,0.0488281,µV
82
+ Ch60=AF8,,0.0488281,µV
83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
87
+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
89
+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
92
+ Ch1=1,-90,-72
93
+ Ch2=1,45,90
94
+ Ch3=1,-60,-51
95
+ Ch4=1,-90,-36
96
+ Ch5=1,112,-90
97
+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
105
+ Ch14=1,-90,36
106
+ Ch15=1,-90,72
107
+ Ch16=1,90,-90
108
+ Ch17=1,90,-72
109
+ Ch18=1,60,-51
110
+ Ch19=1,90,-36
111
+ Ch20=1,113,-18
112
+ Ch21=1,69,-21
113
+ Ch22=1,31,-46
114
+ Ch23=1,0,0
115
+ Ch24=1,45,0
116
+ Ch25=1,90,0
117
+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
124
+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
+ Ch51=1,49,-68
143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
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157
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158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 12:07:58 :
329
+ Fp1: 7
330
+ Fz: 8
331
+ F3: 2
332
+ F7: 1
333
+ Aa: 7
334
+ FC5: 36
335
+ FC1: 5
336
+ C3: 4
337
+ T7: 3
338
+ TP9: 11
339
+ CP5: 11
340
+ CP1: 12
341
+ Pz: 4
342
+ P3: 6
343
+ P7: 6
344
+ O1: 4
345
+ Oz: 5
346
+ O2: 13
347
+ P4: 7
348
+ P8: 4
349
+ TP10: 11
350
+ CP6: 9
351
+ CP2: 3
352
+ Cz: 5
353
+ C4: 6
354
+ T8: 8
355
+ FT10: 7
356
+ FC6: Out of Range!
357
+ FC2: 6
358
+ F4: 2
359
+ F8: 0
360
+ Fp2: 8
361
+ AF7: 0
362
+ AF3: 1
363
+ AFz: 7
364
+ F1: 1
365
+ F5: 2
366
+ FT7: 2
367
+ FC3: 2
368
+ C1: 7
369
+ C5: 4
370
+ TP7: 12
371
+ CP3: 8
372
+ P1: 5
373
+ P5: 6
374
+ PO7: 19
375
+ Bb: 5
376
+ POz: 6
377
+ Cc: 6
378
+ PO8: 12
379
+ P6: 4
380
+ P2: 10
381
+ CPz: 5
382
+ CP4: 7
383
+ TP8: 11
384
+ C6: 8
385
+ C2: 4
386
+ FC4: 1
387
+ FT8: 3
388
+ F6: 3
389
+ AF8: 7
390
+ AF4: 9
391
+ F2: 0
392
+ FCz: 5
393
+ Gnd: 6
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1
+ Brain Vision Data Exchange Marker File, Version 1.0
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+
3
+ [Common Infos]
4
+ Codepage=UTF-8
5
+ DataFile=PD1539.eeg
6
+
7
+ [Marker Infos]
8
+ ; Each entry: Mk<Marker number>=<Type>,<Description>,<Position in data points>,
9
+ ; <Size in data points>, <Channel number (0 = marker is related to all channels)>
10
+ ; Fields are delimited by commas, some fields might be omitted (empty).
11
+ ; Commas in type or description text are coded as "\1".
12
+ Mk1=New Segment,,1,1,0,20190312142729311886
13
+ Mk2=Stimulus,S 1,2741,1,0
14
+ Mk3=Stimulus,S 2,3707,1,0
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+ Mk4=Stimulus,S 1,5223,1,0
16
+ Mk5=Stimulus,S 2,6048,1,0
17
+ Mk6=Stimulus,S 1,7565,1,0
18
+ Mk7=Stimulus,S 1,9630,1,0
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+ Mk8=Stimulus,S 2,10280,1,0
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+ Mk9=Stimulus,S 1,11788,1,0
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+ Mk10=Stimulus,S 1,14079,1,0
22
+ Mk11=Stimulus,S 2,15070,1,0
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+ Mk12=Stimulus,S 1,16578,1,0
24
+ Mk13=Stimulus,S 2,17569,1,0
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+ Mk14=Stimulus,S 1,19077,1,0
26
+ Mk15=Stimulus,S 2,19668,1,0
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+ Mk16=Stimulus,S 2,22168,1,0
28
+ Mk17=Stimulus,S 1,23676,1,0
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+ Mk18=Stimulus,S 1,26175,1,0
30
+ Mk19=Stimulus,S 2,26933,1,0
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+ Mk20=Stimulus,S 1,28441,1,0
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+ Mk21=Stimulus,S 2,29348,1,0
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+ Mk22=Stimulus,S 1,30856,1,0
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+ Mk23=Stimulus,S 2,31439,1,0
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+ Mk24=Stimulus,S 1,32948,1,0
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+ Mk25=Stimulus,S 2,33672,1,0
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+ Mk26=Stimulus,S 1,35180,1,0
38
+ Mk27=Stimulus,S 2,36146,1,0
39
+ Mk28=Stimulus,S 1,37654,1,0
40
+ Mk29=Stimulus,S 2,38562,1,0
41
+ Mk30=Stimulus,S 1,40070,1,0
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+ Mk31=Stimulus,S 2,41061,1,0
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+ Mk32=Stimulus,S 2,43410,1,0
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+ Mk33=Stimulus,S 1,44919,1,0
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+ Mk34=Stimulus,S 2,45443,1,0
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+ Mk35=Stimulus,S 1,46952,1,0
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+ Mk36=Stimulus,S 2,47884,1,0
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+ Mk37=Stimulus,S 1,49392,1,0
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+ Mk38=Stimulus,S 2,50366,1,0
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+ Mk39=Stimulus,S 1,51874,1,0
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+ Mk40=Stimulus,S 2,52724,1,0
52
+ Mk41=Stimulus,S 1,54232,1,0
53
+ Mk42=Stimulus,S 2,55123,1,0
54
+ Mk43=Stimulus,S 1,56631,1,0
55
+ Mk44=Stimulus,S 2,57514,1,0
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+ Mk45=Stimulus,S 1,59022,1,0
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+ Mk46=Stimulus,S 2,59730,1,0
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+ Mk47=Stimulus,S 1,61238,1,0
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+ Mk48=Stimulus,S 2,62079,1,0
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+ Mk49=Stimulus,S 1,63587,1,0
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+ Mk50=Stimulus,S 2,64178,1,0
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+ Mk51=Stimulus,S 1,65687,1,0
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+ Mk52=Stimulus,S 1,68061,1,0
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+ Mk53=Stimulus,S 2,68585,1,0
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+ Mk54=Stimulus,S 1,70094,1,0
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+ Mk55=Stimulus,S 2,70743,1,0
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+ Mk56=Stimulus,S 2,76891,1,0
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+ Mk57=Stimulus,S 1,78407,1,0
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+ Mk58=Stimulus,S 2,78965,1,0
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+ Mk59=Stimulus,S 1,82906,1,0
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+ Mk60=Stimulus,S 2,83763,1,0
72
+ Mk61=Stimulus,S 1,87446,1,0
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+ Mk62=Stimulus,S 2,88429,1,0
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+ Mk63=Stimulus,S 1,89937,1,0
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+ Mk64=Stimulus,S 2,90461,1,0
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+ Mk65=Stimulus,S 1,91969,1,0
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+ Mk66=Stimulus,S 2,92702,1,0
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+ Mk67=Stimulus,S 1,94210,1,0
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+ Mk68=Stimulus,S 1,96418,1,0
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+ Mk69=Stimulus,S 2,97309,1,0
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+ Mk70=Stimulus,S 1,98817,1,0
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+ Mk71=Stimulus,S 2,99725,1,0
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+ Mk72=Stimulus,S 1,101233,1,0
84
+ Mk73=Stimulus,S 2,101833,1,0
85
+ Mk74=Stimulus,S 1,103341,1,0
86
+ Mk75=Stimulus,S 2,104098,1,0
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+ Mk76=Stimulus,S 1,105615,1,0
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+ Mk77=Stimulus,S 1,107856,1,0
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+ Mk78=Stimulus,S 2,108688,1,0
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+ Mk79=Stimulus,S 1,110197,1,0
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+ Mk80=Stimulus,S 1,112571,1,0
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+ Mk81=Stimulus,S 2,113454,1,0
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+ Mk82=Stimulus,S 1,114962,1,0
94
+ Mk83=Stimulus,S 2,115611,1,0
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+ Mk84=Stimulus,S 1,117120,1,0
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+ Mk85=Stimulus,S 2,117969,1,0
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+ Mk86=Stimulus,S 1,119477,1,0
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+ Mk87=Stimulus,S 2,120318,1,0
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+ Mk88=Stimulus,S 1,121826,1,0
100
+ Mk89=Stimulus,S 2,122417,1,0
101
+ Mk90=Stimulus,S 1,123925,1,0
102
+ Mk91=Stimulus,S 2,124491,1,0
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+ Mk92=Stimulus,S 1,126000,1,0
104
+ Mk93=Stimulus,S 2,126758,1,0
105
+ Mk94=Stimulus,S 1,128266,1,0
106
+ Mk95=Stimulus,S 1,130765,1,0
107
+ Mk96=Stimulus,S 2,131447,1,0
108
+ Mk97=Stimulus,S 1,132955,1,0
109
+ Mk98=Stimulus,S 2,133755,1,0
110
+ Mk99=Stimulus,S 1,135264,1,0
111
+ Mk100=Stimulus,S 1,137395,1,0
112
+ Mk101=Stimulus,S 2,138279,1,0
113
+ Mk102=Stimulus,S 1,139787,1,0
114
+ Mk103=Stimulus,S 2,140428,1,0
115
+ Mk104=Stimulus,S 1,141936,1,0
116
+ Mk105=Stimulus,S 2,142702,1,0
raw_data/PD1559.vhdr ADDED
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1
+ Brain Vision Data Exchange Header File Version 1.0
2
+ ; Data created by the Vision Recorder
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+
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+ [Common Infos]
5
+ Codepage=UTF-8
6
+ DataFile=PD1559.eeg
7
+ MarkerFile=PD1559.vmrk
8
+ DataFormat=BINARY
9
+ ; Data orientation: MULTIPLEXED=ch1,pt1, ch2,pt1 ...
10
+ DataOrientation=MULTIPLEXED
11
+ NumberOfChannels=66
12
+ ; Sampling interval in microseconds
13
+ SamplingInterval=2000
14
+
15
+ [Binary Infos]
16
+ BinaryFormat=IEEE_FLOAT_32
17
+
18
+ [Channel Infos]
19
+ ; Each entry: Ch<Channel number>=<Name>,<Reference channel name>,
20
+ ; <Resolution in "Unit">,<Unit>, Future extensions..
21
+ ; Fields are delimited by commas, some fields might be omitted (empty).
22
+ ; Commas in channel names are coded as "\1".
23
+ Ch1=Fp1,,0.0488281,µV
24
+ Ch2=Fz,,0.0488281,µV
25
+ Ch3=F3,,0.0488281,µV
26
+ Ch4=F7,,0.0488281,µV
27
+ Ch5=Aa,,0.0488281,µV
28
+ Ch6=FC5,,0.0488281,µV
29
+ Ch7=FC1,,0.0488281,µV
30
+ Ch8=C3,,0.0488281,µV
31
+ Ch9=T7,,0.0488281,µV
32
+ Ch10=TP9,,0.0488281,µV
33
+ Ch11=CP5,,0.0488281,µV
34
+ Ch12=CP1,,0.0488281,µV
35
+ Ch13=P3,,0.0488281,µV
36
+ Ch14=P7,,0.0488281,µV
37
+ Ch15=O1,,0.0488281,µV
38
+ Ch16=Oz,,0.0488281,µV
39
+ Ch17=O2,,0.0488281,µV
40
+ Ch18=P4,,0.0488281,µV
41
+ Ch19=P8,,0.0488281,µV
42
+ Ch20=TP10,,0.0488281,µV
43
+ Ch21=CP6,,0.0488281,µV
44
+ Ch22=CP2,,0.0488281,µV
45
+ Ch23=Cz,,0.0488281,µV
46
+ Ch24=C4,,0.0488281,µV
47
+ Ch25=T8,,0.0488281,µV
48
+ Ch26=FT10,,0.0488281,µV
49
+ Ch27=FC6,,0.0488281,µV
50
+ Ch28=FC2,,0.0488281,µV
51
+ Ch29=F4,,0.0488281,µV
52
+ Ch30=F8,,0.0488281,µV
53
+ Ch31=Fp2,,0.0488281,µV
54
+ Ch32=AF7,,0.0488281,µV
55
+ Ch33=AF3,,0.0488281,µV
56
+ Ch34=AFz,,0.0488281,µV
57
+ Ch35=F1,,0.0488281,µV
58
+ Ch36=F5,,0.0488281,µV
59
+ Ch37=FT7,,0.0488281,µV
60
+ Ch38=FC3,,0.0488281,µV
61
+ Ch39=C1,,0.0488281,µV
62
+ Ch40=C5,,0.0488281,µV
63
+ Ch41=TP7,,0.0488281,µV
64
+ Ch42=CP3,,0.0488281,µV
65
+ Ch43=P1,,0.0488281,µV
66
+ Ch44=P5,,0.0488281,µV
67
+ Ch45=PO7,,0.0488281,µV
68
+ Ch46=Bb,,0.0488281,µV
69
+ Ch47=POz,,0.0488281,µV
70
+ Ch48=Cc,,0.0488281,µV
71
+ Ch49=PO8,,0.0488281,µV
72
+ Ch50=P6,,0.0488281,µV
73
+ Ch51=P2,,0.0488281,µV
74
+ Ch52=CPz,,0.0488281,µV
75
+ Ch53=CP4,,0.0488281,µV
76
+ Ch54=TP8,,0.0488281,µV
77
+ Ch55=C6,,0.0488281,µV
78
+ Ch56=C2,,0.0488281,µV
79
+ Ch57=FC4,,0.0488281,µV
80
+ Ch58=FT8,,0.0488281,µV
81
+ Ch59=F6,,0.0488281,µV
82
+ Ch60=AF8,,0.0488281,µV
83
+ Ch61=AF4,,0.0488281,µV
84
+ Ch62=F2,,0.0488281,µV
85
+ Ch63=FCz,,0.0488281,µV
86
+ Ch64=X,,1,C
87
+ Ch65=Y,,1,C
88
+ Ch66=Z,,1,C
89
+
90
+ [Coordinates]
91
+ ; Electrode Position File: C:\Vision\Workfiles\AS-64-X6_B_wCerebellum.bvef
92
+ Ch1=1,-90,-72
93
+ Ch2=1,45,90
94
+ Ch3=1,-60,-51
95
+ Ch4=1,-90,-36
96
+ Ch5=1,112,-90
97
+ Ch6=1,-69,-22
98
+ Ch7=1,-31,-46
99
+ Ch8=1,-45,0
100
+ Ch9=1,-90,0
101
+ Ch10=1,-113,18
102
+ Ch11=1,-69,21
103
+ Ch12=1,-31,46
104
+ Ch13=1,-60,51
105
+ Ch14=1,-90,36
106
+ Ch15=1,-90,72
107
+ Ch16=1,90,-90
108
+ Ch17=1,90,-72
109
+ Ch18=1,60,-51
110
+ Ch19=1,90,-36
111
+ Ch20=1,113,-18
112
+ Ch21=1,69,-21
113
+ Ch22=1,31,-46
114
+ Ch23=1,0,0
115
+ Ch24=1,45,0
116
+ Ch25=1,90,0
117
+ Ch26=1,113,18
118
+ Ch27=1,69,21
119
+ Ch28=1,31,46
120
+ Ch29=1,60,51
121
+ Ch30=1,90,36
122
+ Ch31=1,90,72
123
+ Ch32=1,-90,-54
124
+ Ch33=1,-74,-68
125
+ Ch34=1,67,90
126
+ Ch35=1,-49,-68
127
+ Ch36=1,-74,-41
128
+ Ch37=1,-90,-18
129
+ Ch38=1,-49,-29
130
+ Ch39=1,-23,0
131
+ Ch40=1,-68,0
132
+ Ch41=1,-90,18
133
+ Ch42=1,-49,29
134
+ Ch43=1,-49,68
135
+ Ch44=1,-74,41
136
+ Ch45=1,-90,54
137
+ Ch46=1,-112,72
138
+ Ch47=1,67,-90
139
+ Ch48=1,112,-72
140
+ Ch49=1,90,-54
141
+ Ch50=1,74,-41
142
+ Ch51=1,49,-68
143
+ Ch52=1,22,-90
144
+ Ch53=1,49,-29
145
+ Ch54=1,90,-18
146
+ Ch55=1,68,0
147
+ Ch56=1,23,0
148
+ Ch57=1,49,29
149
+ Ch58=1,90,18
150
+ Ch59=1,74,41
151
+ Ch60=1,90,54
152
+ Ch61=1,74,68
153
+ Ch62=1,49,68
154
+ Ch63=1,23,90
155
+ Ch64=0,0,0
156
+ Ch65=0,0,0
157
+ Ch66=0,0,0
158
+
159
+ [Comment]
160
+ Pedaling
161
+ BrainVision Recorder Professional - V. 1.21.0102
162
+
163
+
164
+ A m p l i f i e r S e t u p
165
+ ============================
166
+ Number of channels: 66
167
+ Sampling Rate [Hz]: 500
168
+ Sampling Interval [µS]: 2000
169
+
170
+ Channels
171
+ --------
172
+ # Name Phys. Chn. Resolution / Unit Low Cutoff [s] High Cutoff [Hz] Notch [Hz] Gradient Offset
173
+ 1 Fp1 1 0.0488281 µV DC 140 Off
174
+ 2 Fz 2 0.0488281 µV DC 140 Off
175
+ 3 F3 3 0.0488281 µV DC 140 Off
176
+ 4 F7 4 0.0488281 µV DC 140 Off
177
+ 5 Aa 5 0.0488281 µV DC 140 Off
178
+ 6 FC5 6 0.0488281 µV DC 140 Off
179
+ 7 FC1 7 0.0488281 µV DC 140 Off
180
+ 8 C3 8 0.0488281 µV DC 140 Off
181
+ 9 T7 9 0.0488281 µV DC 140 Off
182
+ 10 TP9 10 0.0488281 µV DC 140 Off
183
+ 11 CP5 11 0.0488281 µV DC 140 Off
184
+ 12 CP1 12 0.0488281 µV DC 140 Off
185
+ 13 P3 14 0.0488281 µV DC 140 Off
186
+ 14 P7 15 0.0488281 µV DC 140 Off
187
+ 15 O1 16 0.0488281 µV DC 140 Off
188
+ 16 Oz 17 0.0488281 µV DC 140 Off
189
+ 17 O2 18 0.0488281 µV DC 140 Off
190
+ 18 P4 19 0.0488281 µV DC 140 Off
191
+ 19 P8 20 0.0488281 µV DC 140 Off
192
+ 20 TP10 21 0.0488281 µV DC 140 Off
193
+ 21 CP6 22 0.0488281 µV DC 140 Off
194
+ 22 CP2 23 0.0488281 µV DC 140 Off
195
+ 23 Cz 24 0.0488281 µV DC 140 Off
196
+ 24 C4 25 0.0488281 µV DC 140 Off
197
+ 25 T8 26 0.0488281 µV DC 140 Off
198
+ 26 FT10 27 0.0488281 µV DC 140 Off
199
+ 27 FC6 28 0.0488281 µV DC 140 Off
200
+ 28 FC2 29 0.0488281 µV DC 140 Off
201
+ 29 F4 30 0.0488281 µV DC 140 Off
202
+ 30 F8 31 0.0488281 µV DC 140 Off
203
+ 31 Fp2 32 0.0488281 µV DC 140 Off
204
+ 32 AF7 33 0.0488281 µV DC 140 Off
205
+ 33 AF3 34 0.0488281 µV DC 140 Off
206
+ 34 AFz 35 0.0488281 µV DC 140 Off
207
+ 35 F1 36 0.0488281 µV DC 140 Off
208
+ 36 F5 37 0.0488281 µV DC 140 Off
209
+ 37 FT7 38 0.0488281 µV DC 140 Off
210
+ 38 FC3 39 0.0488281 µV DC 140 Off
211
+ 39 C1 40 0.0488281 µV DC 140 Off
212
+ 40 C5 41 0.0488281 µV DC 140 Off
213
+ 41 TP7 42 0.0488281 µV DC 140 Off
214
+ 42 CP3 43 0.0488281 µV DC 140 Off
215
+ 43 P1 44 0.0488281 µV DC 140 Off
216
+ 44 P5 45 0.0488281 µV DC 140 Off
217
+ 45 PO7 46 0.0488281 µV DC 140 Off
218
+ 46 Bb 47 0.0488281 µV DC 140 Off
219
+ 47 POz 48 0.0488281 µV DC 140 Off
220
+ 48 Cc 49 0.0488281 µV DC 140 Off
221
+ 49 PO8 50 0.0488281 µV DC 140 Off
222
+ 50 P6 51 0.0488281 µV DC 140 Off
223
+ 51 P2 52 0.0488281 µV DC 140 Off
224
+ 52 CPz 53 0.0488281 µV DC 140 Off
225
+ 53 CP4 54 0.0488281 µV DC 140 Off
226
+ 54 TP8 55 0.0488281 µV DC 140 Off
227
+ 55 C6 56 0.0488281 µV DC 140 Off
228
+ 56 C2 57 0.0488281 µV DC 140 Off
229
+ 57 FC4 58 0.0488281 µV DC 140 Off
230
+ 58 FT8 59 0.0488281 µV DC 140 Off
231
+ 59 F6 60 0.0488281 µV DC 140 Off
232
+ 60 AF8 61 0.0488281 µV DC 140 Off
233
+ 61 AF4 62 0.0488281 µV DC 140 Off
234
+ 62 F2 63 0.0488281 µV DC 140 Off
235
+ 63 FCz 64 0.0488281 µV DC 140 Off
236
+ 64 X 65 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
237
+ 65 Y 66 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
238
+ 66 Z 67 1 C DC 140 Off 1[mV/C] 1e+006[mV] = 0[C]
239
+
240
+ Reference Channel Name = Pz
241
+ Reference Phys. Chn. = 13
242
+ Good Level [kOhms] = 10
243
+ Bad Level [kOhms] = 50
244
+ MY-Button Workspace = C:\Vision\Workfiles\MYButton
245
+
246
+ Amplifier
247
+ actiCHamp Base Unit (5001)
248
+ --- S/N 17060817 ---
249
+
250
+ actiCHamp 32 CH Module
251
+ --- Module 1 (5010): S/N 17061539 ---
252
+ --- Module 2 (5010): S/N 17061540 ---
253
+ Version: DLL_25.14.08.04, DRV_03.04.01.146, CTRL_103.17.02.27, FPGA_48.00.00.00, FPGAC_45.00.00.00, DSP_105.14.10.07
254
+
255
+
256
+ S o f t w a r e F i l t e r s
257
+ ==============================
258
+ # Low Cutoff [s] High Cutoff [Hz] Notch [Hz]
259
+ 1 10 Off Off
260
+ 2 10 Off Off
261
+ 3 10 Off Off
262
+ 4 10 Off Off
263
+ 5 10 Off Off
264
+ 6 10 Off Off
265
+ 7 10 Off Off
266
+ 8 10 Off Off
267
+ 9 10 Off Off
268
+ 10 10 Off Off
269
+ 11 10 Off Off
270
+ 12 10 Off Off
271
+ 13 10 Off Off
272
+ 14 10 Off Off
273
+ 15 10 Off Off
274
+ 16 10 Off Off
275
+ 17 10 Off Off
276
+ 18 10 Off Off
277
+ 19 10 Off Off
278
+ 20 10 Off Off
279
+ 21 10 Off Off
280
+ 22 10 Off Off
281
+ 23 10 Off Off
282
+ 24 10 Off Off
283
+ 25 10 Off Off
284
+ 26 10 Off Off
285
+ 27 10 Off Off
286
+ 28 10 Off Off
287
+ 29 10 Off Off
288
+ 30 10 Off Off
289
+ 31 10 Off Off
290
+ 32 10 Off Off
291
+ 33 10 Off Off
292
+ 34 10 Off Off
293
+ 35 10 Off Off
294
+ 36 10 Off Off
295
+ 37 10 Off Off
296
+ 38 10 Off Off
297
+ 39 10 Off Off
298
+ 40 10 Off Off
299
+ 41 10 Off Off
300
+ 42 10 Off Off
301
+ 43 10 Off Off
302
+ 44 10 Off Off
303
+ 45 10 Off Off
304
+ 46 10 Off Off
305
+ 47 10 Off Off
306
+ 48 10 Off Off
307
+ 49 10 Off Off
308
+ 50 10 Off Off
309
+ 51 10 Off Off
310
+ 52 10 Off Off
311
+ 53 10 Off Off
312
+ 54 10 Off Off
313
+ 55 10 Off Off
314
+ 56 10 Off Off
315
+ 57 10 Off Off
316
+ 58 10 Off Off
317
+ 59 10 Off Off
318
+ 60 10 Off Off
319
+ 61 10 Off Off
320
+ 62 10 Off Off
321
+ 63 10 Off Off
322
+ 64 Off Off Off
323
+ 65 Off Off Off
324
+ 66 Off Off Off
325
+
326
+
327
+ Data/Gnd Electrodes Selected Impedance Measurement Range: 10 - 50 kOhm
328
+ Impedance [kOhm] at 11:08:43 :
329
+ Fp1: 6
330
+ Fz: 5
331
+ F3: 11
332
+ F7: 8
333
+ Aa: 25
334
+ FC5: 20
335
+ FC1: 7
336
+ C3: 15
337
+ T7: 15
338
+ TP9: 33
339
+ CP5: 17
340
+ CP1: 8
341
+ Pz: 7
342
+ P3: 7
343
+ P7: 18
344
+ O1: 34
345
+ Oz: 23
346
+ O2: 18
347
+ P4: 9
348
+ P8: 10
349
+ TP10: 15
350
+ CP6: 11
351
+ CP2: 4
352
+ Cz: 5
353
+ C4: 19
354
+ T8: 14
355
+ FT10: 17
356
+ FC6: 2
357
+ FC2: 20
358
+ F4: 7
359
+ F8: 13
360
+ Fp2: 6
361
+ AF7: 9
362
+ AF3: 6
363
+ AFz: 23
364
+ F1: 10
365
+ F5: 9
366
+ FT7: 24
367
+ FC3: 14
368
+ C1: 6
369
+ C5: 18
370
+ TP7: 18
371
+ CP3: 22
372
+ P1: 7
373
+ P5: 18
374
+ PO7: 17
375
+ Bb: 24
376
+ POz: 9
377
+ Cc: 23
378
+ PO8: 12
379
+ P6: 7
380
+ P2: 10
381
+ CPz: 4
382
+ CP4: 10
383
+ TP8: 10
384
+ C6: 5
385
+ C2: 5
386
+ FC4: 10
387
+ FT8: 16
388
+ F6: 10
389
+ AF8: 7
390
+ AF4: 10
391
+ F2: 7
392
+ FCz: 6
393
+ Gnd: 5
raw_data/PD1559.vmrk ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Brain Vision Data Exchange Marker File, Version 1.0
2
+
3
+ [Common Infos]
4
+ Codepage=UTF-8
5
+ DataFile=PD1559.eeg
6
+
7
+ [Marker Infos]
8
+ ; Each entry: Mk<Marker number>=<Type>,<Description>,<Position in data points>,
9
+ ; <Size in data points>, <Channel number (0 = marker is related to all channels)>
10
+ ; Fields are delimited by commas, some fields might be omitted (empty).
11
+ ; Commas in type or description text are coded as "\1".
12
+ Mk1=New Segment,,1,1,0,20190320131802313801
13
+ Mk2=Stimulus,S 1,3195,1,0
14
+ Mk3=Stimulus,S 2,4161,1,0
15
+ Mk4=Stimulus,S 1,5677,1,0
16
+ Mk5=Stimulus,S 2,6501,1,0
17
+ Mk6=Stimulus,S 1,8010,1,0
18
+ Mk7=Stimulus,S 2,8567,1,0
19
+ Mk8=Stimulus,S 1,10076,1,0
20
+ Mk9=Stimulus,S 2,10725,1,0
21
+ Mk10=Stimulus,S 1,12233,1,0
22
+ Mk11=Stimulus,S 2,13016,1,0
23
+ Mk12=Stimulus,S 1,14524,1,0
24
+ Mk13=Stimulus,S 2,15515,1,0
25
+ Mk14=Stimulus,S 1,17023,1,0
26
+ Mk15=Stimulus,S 2,18014,1,0
27
+ Mk16=Stimulus,S 1,21622,1,0
28
+ Mk17=Stimulus,S 2,22613,1,0
29
+ Mk18=Stimulus,S 1,24129,1,0
30
+ Mk19=Stimulus,S 1,26629,1,0
31
+ Mk20=Stimulus,S 1,28894,1,0
32
+ Mk21=Stimulus,S 2,29802,1,0
33
+ Mk22=Stimulus,S 1,31310,1,0
34
+ Mk23=Stimulus,S 2,31893,1,0
35
+ Mk24=Stimulus,S 1,33401,1,0
36
+ Mk25=Stimulus,S 2,34126,1,0
37
+ Mk26=Stimulus,S 1,35634,1,0
38
+ Mk27=Stimulus,S 1,38108,1,0
39
+ Mk28=Stimulus,S 1,40524,1,0
40
+ Mk29=Stimulus,S 2,41515,1,0
41
+ Mk30=Stimulus,S 1,43023,1,0
42
+ Mk31=Stimulus,S 2,43864,1,0
43
+ Mk32=Stimulus,S 1,45372,1,0
44
+ Mk33=Stimulus,S 2,45897,1,0
45
+ Mk34=Stimulus,S 1,47413,1,0
46
+ Mk35=Stimulus,S 2,48346,1,0
47
+ Mk36=Stimulus,S 1,49854,1,0
48
+ Mk37=Stimulus,S 2,50829,1,0
49
+ Mk38=Stimulus,S 1,52337,1,0
50
+ Mk39=Stimulus,S 2,53186,1,0
51
+ Mk40=Stimulus,S 2,55585,1,0
52
+ Mk41=Stimulus,S 1,57093,1,0
53
+ Mk42=Stimulus,S 2,57976,1,0
54
+ Mk43=Stimulus,S 1,59484,1,0
55
+ Mk44=Stimulus,S 2,60192,1,0
56
+ Mk45=Stimulus,S 1,61700,1,0
57
+ Mk46=Stimulus,S 2,62541,1,0
58
+ Mk47=Stimulus,S 1,64049,1,0
59
+ Mk48=Stimulus,S 1,66157,1,0
60
+ Mk49=Stimulus,S 2,67023,1,0
61
+ Mk50=Stimulus,S 1,68531,1,0
62
+ Mk51=Stimulus,S 2,69055,1,0
63
+ Mk52=Stimulus,S 1,70564,1,0
64
+ Mk53=Stimulus,S 2,71213,1,0
65
+ Mk54=Stimulus,S 1,88433,1,0
66
+ Mk55=Stimulus,S 2,88966,1,0
67
+ Mk56=Stimulus,S 1,90474,1,0
68
+ Mk57=Stimulus,S 2,91031,1,0
69
+ Mk58=Stimulus,S 1,92540,1,0
70
+ Mk59=Stimulus,S 2,93464,1,0
71
+ Mk60=Stimulus,S 1,94972,1,0
72
+ Mk61=Stimulus,S 2,95830,1,0
73
+ Mk62=Stimulus,S 1,97338,1,0
74
+ Mk63=Stimulus,S 2,98004,1,0
75
+ Mk64=Stimulus,S 1,99512,1,0
76
+ Mk65=Stimulus,S 2,100495,1,0
77
+ Mk66=Stimulus,S 1,102003,1,0
78
+ Mk67=Stimulus,S 2,102528,1,0
79
+ Mk68=Stimulus,S 1,104036,1,0
80
+ Mk69=Stimulus,S 1,106277,1,0
81
+ Mk70=Stimulus,S 2,106976,1,0
82
+ Mk71=Stimulus,S 1,108484,1,0
83
+ Mk72=Stimulus,S 2,109375,1,0
84
+ Mk73=Stimulus,S 2,111791,1,0
85
+ Mk74=Stimulus,S 1,113299,1,0
86
+ Mk75=Stimulus,S 2,113899,1,0
87
+ Mk76=Stimulus,S 1,115407,1,0
88
+ Mk77=Stimulus,S 2,116165,1,0
89
+ Mk78=Stimulus,S 1,117673,1,0
90
+ Mk79=Stimulus,S 1,119914,1,0
91
+ Mk80=Stimulus,S 2,120746,1,0
92
+ Mk81=Stimulus,S 1,122254,1,0
93
+ Mk82=Stimulus,S 1,124629,1,0
94
+ Mk83=Stimulus,S 2,125512,1,0
95
+ Mk84=Stimulus,S 1,127029,1,0
96
+ Mk85=Stimulus,S 1,129186,1,0
97
+ Mk86=Stimulus,S 2,130035,1,0
98
+ Mk87=Stimulus,S 1,131543,1,0
99
+ Mk88=Stimulus,S 2,132384,1,0
100
+ Mk89=Stimulus,S 1,133892,1,0
101
+ Mk90=Stimulus,S 1,135991,1,0
102
+ Mk91=Stimulus,S 2,136558,1,0
103
+ Mk92=Stimulus,S 1,138066,1,0
104
+ Mk93=Stimulus,S 2,138824,1,0
105
+ Mk94=Stimulus,S 1,140332,1,0
106
+ Mk95=Stimulus,S 2,141323,1,0
107
+ Mk96=Stimulus,S 1,142831,1,0
108
+ Mk97=Stimulus,S 2,143514,1,0
109
+ Mk98=Stimulus,S 1,145022,1,0
110
+ Mk99=Stimulus,S 2,145821,1,0
111
+ Mk100=Stimulus,S 1,147330,1,0
112
+ Mk101=Stimulus,S 2,147954,1,0
113
+ Mk102=Stimulus,S 1,149462,1,0
114
+ Mk103=Stimulus,S 2,150345,1,0
115
+ Mk104=Stimulus,S 1,151854,1,0
116
+ Mk105=Stimulus,S 2,152494,1,0
117
+ Mk106=Stimulus,S 1,154002,1,0
118
+ Mk107=Stimulus,S 2,154768,1,0
scripts/ADJUST1.1.1/ADJUST.m ADDED
@@ -0,0 +1,546 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % ADJUST() - Automatic EEG artifact Detector
3
+ % with Joint Use of Spatial and Temporal features
4
+ %
5
+ % Usage:
6
+ % >> [art, horiz, vert, blink, disc,...
7
+ % soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
8
+ % soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, nuovaV, soglia_D, maxdin]=ADJUST (EEG,out)
9
+ %
10
+ % Inputs:
11
+ % EEG - current dataset structure or structure array (has to be epoched)
12
+ % out - (string) report file name
13
+ %
14
+ % Outputs:
15
+ % art - List of artifacted ICs
16
+ % horiz - List of HEM ICs
17
+ % vert - List of VEM ICs
18
+ % blink - List of EB ICs
19
+ % disc - List of GD ICs
20
+ % soglia_DV - SVD threshold
21
+ % diff_var - SVD feature values
22
+ % soglia_K - TK threshold
23
+ % meanK - TK feature values
24
+ % soglia_SED - SED threshold
25
+ % SED - SED feature values
26
+ % soglia_SAD - SAD threshold
27
+ % SAD - SAD feature values
28
+ % soglia_GDSF- GDSF threshold
29
+ % GDSF - GDSF feature values
30
+ % soglia_V - MEV threshold
31
+ % nuovaV - MEV feature values
32
+ %
33
+ %
34
+
35
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
36
+ %
37
+ % ADJUST
38
+ % Automatic EEG artifact Detector based on the Joint Use of Spatial and Temporal features
39
+ %
40
+ % Developed 2007-2014
41
+ % Andrea Mognon (1) and Marco Buiatti (2),
42
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
43
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
44
+ %
45
+ % Last update: 02/05/2014 by Marco Buiatti
46
+ %
47
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
48
+ %
49
+ % Reference paper:
50
+ % Mognon A, Jovicich J, Bruzzone L, Buiatti M,
51
+ % ADJUST: An Automatic EEG artifact Detector based on the Joint Use of Spatial and Temporal features.
52
+ % Psychophysiology 48 (2), 229-240 (2011).
53
+ %
54
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
55
+
56
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
57
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
58
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
59
+ %
60
+ % This program is free software; you can redistribute it and/or modify
61
+ % it under the terms of the GNU General Public License as published by
62
+ % the Free Software Foundation; either version 2 of the License, or
63
+ % (at your option) any later version.
64
+ %
65
+ % This program is distributed in the hope that it will be useful,
66
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
67
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
68
+ % GNU General Public License for more details.
69
+ %
70
+ % You should have received a copy of the GNU General Public License
71
+ % along with this program; if not, write to the Free Software
72
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
73
+
74
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
75
+
76
+ % VERSIONS LOG
77
+ %
78
+ % 02/05/14: Modified text in Report.txt (MB).
79
+ %
80
+ % 30/03/14: Removed 'message to the user' (redundant). (MB)
81
+ %
82
+ % 22/03/14: kurtosis is replaced by kurt for compatibility if signal processing
83
+ % toolbox is missing (MB).
84
+ %
85
+ % V2 (07 OCTOBER 2010) - by Andrea Mognon
86
+ % Added input 'nchannels' to compute_SAD and compute_SED_NOnorm;
87
+ % this is useful to differentiate the number of ICs (n) and the number of
88
+ % sensors (nchannels);
89
+ % bug reported by Guido Hesselman on October, 1 2010.
90
+
91
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
92
+
93
+
94
+ % function [art, horiz, vert, blink, disc,...
95
+ % soglia_DV, diff_var, soglia_K, meanK, soglia_SED, SED, soglia_SAD, SAD, ...
96
+ % soglia_GDSF, GDSF, soglia_V, nuovaV, soglia_D, maxdin]=ADJUST (EEG,out)
97
+ function [art, horiz, vert, blink, disc,...
98
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
99
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, nuovaV, soglia_D, maxdin]=ADJUST (EEG,out)
100
+
101
+
102
+ %% Settings
103
+
104
+ % ----------------------------------------------------
105
+ % | Change experimental settings in this section |
106
+ % ----------------------------------------------------
107
+
108
+ % ----------------------------------------------------
109
+ % | Initial message to user: |
110
+ % ----------------------------------------------------
111
+ %
112
+ % disp(' ')
113
+ % disp('Detects Horizontal and Vertical eye movements,')
114
+ % disp('Blinks and Discontinuities in dataset:')
115
+ % disp([EEG.filename])
116
+ % disp(' ')
117
+
118
+ % ----------------------------------------------------
119
+ % | Collect useful data from EEG structure |
120
+ % ----------------------------------------------------
121
+
122
+ %number of ICs=size(EEG.icawinv,1);
123
+
124
+ %number of time points=size(EEG.data,2);
125
+
126
+ if length(size(EEG.data))==3
127
+
128
+ num_epoch=size(EEG.data,3);
129
+
130
+ else
131
+
132
+ num_epoch=0;
133
+
134
+ end
135
+
136
+ % Check the presence of ICA activations
137
+
138
+ if isempty(EEG.icaact)
139
+ disp('EEG.icaact not present. Recomputed from data.');
140
+ if length(size(EEG.data))==3
141
+ % EEG.icaact = EEG.icaweights*EEG.icasphere*reshape(EEG.data, size(EEG.icawinv,1), num_epoch*size(EEG.data,2));
142
+ % EEG.icaact = reshape(EEG.icaact,size(EEG.icawinv,1),size(EEG.data,2), num_epoch);
143
+ EEG.icaact = reshape(EEG.icaweights*EEG.icasphere*reshape(EEG.data,[size(EEG.data,1)...
144
+ size(EEG.data,2)*size(EEG.data,3)]),[size(EEG.data,1) size(EEG.data,2) size(EEG.data,3)]);
145
+ else EEG.icaact = EEG.icaweights*EEG.icasphere*EEG.data;
146
+ end
147
+ end
148
+
149
+ topografie=EEG.icawinv'; %computes IC topographies
150
+
151
+ % Topographies and time courses normalization
152
+ %
153
+ % disp(' ');
154
+ % disp('Normalizing topographies...')
155
+ % disp('Scaling time courses...')
156
+
157
+ for i=1:size(EEG.icawinv,2) % number of ICs
158
+
159
+ ScalingFactor=norm(topografie(i,:));
160
+
161
+ topografie(i,:)=topografie(i,:)/ScalingFactor;
162
+
163
+ if length(size(EEG.data))==3
164
+ EEG.icaact(i,:,:)=ScalingFactor*EEG.icaact(i,:,:);
165
+ else
166
+ EEG.icaact(i,:)=ScalingFactor*EEG.icaact(i,:);
167
+ end
168
+
169
+ end
170
+ %
171
+ % disp('Done.')
172
+ % disp(' ')
173
+
174
+ % Variables memorizing artifacted ICs indexes
175
+
176
+ blink=[];
177
+
178
+ horiz=[];
179
+
180
+ vert=[];
181
+
182
+ disc=[];
183
+
184
+ %% Check EEG channel position information
185
+ nopos_channels=[];
186
+ for el=1:length(EEG.chanlocs)
187
+ if(any(isempty(EEG.chanlocs(1,el).X)&isempty(EEG.chanlocs(1,el).Y)&isempty(EEG.chanlocs(1,el).Z)&isempty(EEG.chanlocs(1,el).theta)&isempty(EEG.chanlocs(1,el).radius)))
188
+ nopos_channels=[nopos_channels el];
189
+ end;
190
+ end
191
+
192
+ if ~isempty(nopos_channels)
193
+ warning(['Channels ' num2str(nopos_channels) ' have incomplete location information. They will NOT be used to compute ADJUST spatial features']);
194
+ disp(' ');
195
+ end;
196
+
197
+ pos_channels=setdiff(1:length(EEG.chanlocs),nopos_channels);
198
+
199
+ %% Feature extraction
200
+
201
+ disp(' ')
202
+ disp('Features Extraction:')
203
+
204
+ %GDSF - General Discontinuity Spatial Feature
205
+
206
+ disp('GDSF - General Discontinuity Spatial Feature...')
207
+
208
+ GDSF = compute_GD_feat(topografie,EEG.chanlocs(1,pos_channels),size(EEG.icawinv,2));
209
+
210
+
211
+ %SED - Spatial Eye Difference
212
+
213
+ disp('SED - Spatial Eye Difference...')
214
+
215
+ [SED,medie_left,medie_right]=computeSED_NOnorm(topografie,EEG.chanlocs(1,pos_channels),size(EEG.icawinv,2));
216
+
217
+
218
+ %SAD - Spatial Average Difference
219
+
220
+ disp('SAD - Spatial Average Difference...')
221
+
222
+ [SAD,var_front,var_back,mean_front,mean_back]=computeSAD(topografie,EEG.chanlocs(1,pos_channels),size(EEG.icawinv,2));
223
+
224
+
225
+ %SVD - Spatial Variance Difference between front zone and back zone
226
+
227
+ diff_var=var_front-var_back;
228
+
229
+ %epoch dynamic range, variance and kurtosis
230
+
231
+ K=zeros(num_epoch,size(EEG.icawinv,2)); %kurtosis
232
+ Kloc=K;
233
+
234
+ Vmax=zeros(num_epoch,size(EEG.icawinv,2)); %variance
235
+
236
+ % disp('Computing variance and kurtosis of all epochs...')
237
+
238
+ for i=1:size(EEG.icawinv,2) % number of ICs
239
+
240
+ for j=1:num_epoch
241
+ Vmax(j,i)=var(EEG.icaact(i,:,j));
242
+ % Kloc(j,i)=kurtosis(EEG.icaact(i,:,j));
243
+ K(j,i)=kurt(EEG.icaact(i,:,j));
244
+ end
245
+ end
246
+
247
+ % check that kurt and kurtosis give the same values:
248
+ % [a,b]=max(abs(Kloc(:)-K(:)))
249
+
250
+ %TK - Temporal Kurtosis
251
+
252
+ disp('Temporal Kurtosis...')
253
+
254
+ meanK=zeros(1,size(EEG.icawinv,2));
255
+
256
+ for i=1:size(EEG.icawinv,2)
257
+ if num_epoch>100
258
+ meanK(1,i)=trim_and_mean(K(:,i));
259
+ else meanK(1,i)=mean(K(:,i));
260
+ end
261
+
262
+ end
263
+
264
+
265
+ %MEV - Maximum Epoch Variance
266
+
267
+ disp('Maximum epoch variance...')
268
+
269
+ maxvar=zeros(1,size(EEG.icawinv,2));
270
+ meanvar=zeros(1,size(EEG.icawinv,2));
271
+
272
+
273
+ for i=1:size(EEG.icawinv,2)
274
+ if num_epoch>100
275
+ maxvar(1,i)=trim_and_max(Vmax(:,i)');
276
+ meanvar(1,i)=trim_and_mean(Vmax(:,i)');
277
+ else
278
+ maxvar(1,i)=max(Vmax(:,i));
279
+ meanvar(1,i)=mean(Vmax(:,i));
280
+ end
281
+ end
282
+
283
+ % MEV in reviewed formulation:
284
+
285
+ nuovaV=maxvar./meanvar;
286
+
287
+
288
+
289
+ %% Thresholds computation
290
+
291
+ disp('Computing EM thresholds...')
292
+
293
+ % soglia_K=EM(meanK);
294
+ %
295
+ % soglia_SED=EM(SED);
296
+ %
297
+ % soglia_SAD=EM(SAD);
298
+ %
299
+ % soglia_GDSF=EM(GDSF);
300
+ %
301
+ % soglia_V=EM(nuovaV);
302
+ [soglia_K,med1_K,med2_K]=EM(meanK);
303
+
304
+ [soglia_SED,med1_SED,med2_SED]=EM(SED);
305
+
306
+ [soglia_SAD,med1_SAD,med2_SAD]=EM(SAD);
307
+
308
+ [soglia_GDSF,med1_GDSF,med2_GDSF]=EM(GDSF);
309
+
310
+ [soglia_V,med1_V,med2_V]=EM(nuovaV);
311
+
312
+ %% Output file header
313
+
314
+ % ----------------------------------------------------
315
+ % | Opens report file and writes header |
316
+ % ----------------------------------------------------
317
+
318
+ file=fopen(out,'w');
319
+
320
+ fprintf(file,'ADJUST\n');
321
+
322
+ fprintf(file,'Automatic EEG artifacts Detector with Joint Use of Spatial and Temporal features\n\n');
323
+
324
+ fprintf(file,'Andrea Mognon and Marco Buiatti (2009-2014)\n\n');
325
+
326
+ fprintf(file,['Analyzed dataset: ' EEG.filename '\n']);
327
+
328
+ fprintf(file,['Analysis date: ' date '\n']);
329
+
330
+ fprintf(file,'Analysis carried out on the %d Independent Components\n\n',size(EEG.icawinv,2));
331
+
332
+
333
+ %% Horizontal eye movements (HEM)
334
+
335
+ disp(' ');
336
+ disp('Artifact Identification:');
337
+ disp('Horizontal Eye Movements...')
338
+
339
+ % ----------------------------------------------------
340
+ % | Writes HEM header in the report file |
341
+ % ----------------------------------------------------
342
+
343
+ fprintf(file,'> HEM - Horizontal movements\n\n');
344
+
345
+ fprintf(file,'Classification based on features:\n');
346
+
347
+ fprintf(file,'SED - Spatial eye difference (threshold=%f)\n',soglia_SED);
348
+
349
+ fprintf(file,'MEV - Maximum epoch variance (threshold=%f)\n\n',soglia_V);
350
+
351
+ fprintf(file,'ICs with Horizontal eye movements:\n');
352
+
353
+ horiz=intersect(intersect(find(SED>=soglia_SED),find(medie_left.*medie_right<0)),...
354
+ (find(nuovaV>=soglia_V)));
355
+
356
+ hor_bool=1; %true if there are artifacted ICs
357
+
358
+ if isempty(horiz) %no IC found
359
+
360
+ fprintf(file,'/ \n');
361
+
362
+ hor_bool=0;
363
+
364
+ else
365
+
366
+ fprintf(file,[num2str(horiz) '\n']);
367
+ fprintf(file,'\n');
368
+
369
+ end
370
+
371
+
372
+
373
+ %% Vertical eye movements (VEM)
374
+
375
+ disp('Vertical Eye Movements...')
376
+
377
+ % ----------------------------------------------------
378
+ % | Writes VEM header in the report file |
379
+ % ----------------------------------------------------
380
+
381
+
382
+ fprintf(file,'>> VEM - Vertical movements\n\n');
383
+
384
+ fprintf(file,'Classification based on features:\n');
385
+
386
+ fprintf(file,'SAD - Spatial average difference (threshold=%f)\n',soglia_SAD);
387
+
388
+ fprintf(file,'MEV - Maximum epoch variance (threshold=%f)\n\n',soglia_V);
389
+
390
+ fprintf(file,'ICs with Vertical eye movements:\n');
391
+
392
+
393
+
394
+
395
+ vert=intersect(intersect(find(SAD>=soglia_SAD),find(medie_left.*medie_right>0)),...
396
+ intersect(find(diff_var>0),find(nuovaV>=soglia_V)));
397
+
398
+
399
+
400
+ ver_bool=1; %true if there are artifacted ICs
401
+
402
+ if isempty(vert) %no artifact found
403
+
404
+ fprintf(file,'/ \n');
405
+
406
+ ver_bool=0;
407
+ else
408
+
409
+ fprintf(file,[num2str(vert) '\n']);
410
+ fprintf(file,'\n');
411
+ end
412
+
413
+
414
+
415
+
416
+ %% Eye Blink (EB)
417
+
418
+ disp('Eye Blinks...')
419
+
420
+ % ----------------------------------------------------
421
+ % | Writes EB header in the report file |
422
+ % ----------------------------------------------------
423
+
424
+ fprintf(file,'>>> EB - Blinks\n\n');
425
+
426
+ fprintf(file,'Classification based on features:\n');
427
+
428
+ fprintf(file,'SAD (threshold=%f)\n',soglia_SAD);
429
+
430
+ fprintf(file,'TK - Temporal kurtosis (threshold=%f)\n\n',soglia_K);
431
+
432
+ fprintf(file,'ICs with Blinks:\n');
433
+
434
+
435
+
436
+ blink=intersect ( intersect( find(SAD>=soglia_SAD),find(medie_left.*medie_right>0) ) ,...
437
+ intersect ( find(meanK>=soglia_K),find(diff_var>0) ));
438
+
439
+
440
+
441
+ bl_bool=1; %true if there are artifacted ICs
442
+
443
+ if isempty(blink) %no blink component
444
+
445
+ fprintf(file,'/ \n');
446
+
447
+ bl_bool=0;
448
+ else
449
+
450
+ fprintf(file,[num2str(blink) '\n']);
451
+ fprintf(file,'\n');
452
+ end
453
+
454
+
455
+
456
+ %% Generic Discontinuities (GD)
457
+
458
+ disp('Generic Discontinuities...')
459
+
460
+ % ----------------------------------------------------
461
+ % | Writes GD header in the report file |
462
+ % ----------------------------------------------------
463
+
464
+ fprintf(file,'>>>> GD - Discontinuities\n');
465
+
466
+ fprintf(file,'Classification based on features:\n');
467
+
468
+ fprintf(file,'GDSF - Generic Discontinuities Spatial Feature (threshold=%f)\n',soglia_GDSF);
469
+
470
+ fprintf(file,'MEV - Maximum epoch variance (threshold=%f)\n\n',soglia_V);
471
+
472
+ fprintf(file,'ICs with Generic Discontinuities:\n');
473
+
474
+
475
+ disc=intersect(find(GDSF>=soglia_GDSF),find(nuovaV>=soglia_V));
476
+
477
+ dsc_bool=1; %true if there are discontinuities
478
+
479
+ if isempty(disc) %no discontinuities
480
+
481
+ fprintf(file,'/ \n');
482
+
483
+ dsc_bool=0;
484
+ else
485
+
486
+ fprintf(file,[num2str(disc) '\n']);
487
+ fprintf(file,'\n');
488
+ end
489
+
490
+ aic=unique([blink disc horiz vert]);
491
+
492
+ fprintf(file,'Artifacted ICs (total):\n');
493
+ fprintf(file,[num2str(aic) '\n']);
494
+ fprintf(file,'\n');
495
+
496
+
497
+
498
+ %% Displaying results
499
+
500
+ % ----------------------------------------------------
501
+ % | Write message to user: report file name |
502
+ % ----------------------------------------------------
503
+
504
+ disp(' ')
505
+ disp(['Results in <' out '>.'])
506
+
507
+
508
+ fclose(file);
509
+
510
+ %compute output variable
511
+ art = nonzeros( union (union(blink,horiz) , union(vert,disc)) )'; %artifact ICs
512
+
513
+ % these three are old outputs which are no more necessary in latest ADJUST version.
514
+ soglia_D=0;
515
+ soglia_DV=0;
516
+ maxdin=zeros(1,size(EEG.icawinv,2));
517
+
518
+ return
519
+
520
+ %% The following sections have been moved to interface_ADJ in order to manage
521
+ %% continuous data
522
+
523
+ %
524
+ % %% Saving artifacted ICs for further analysis
525
+ %
526
+ % nome=['List_' EEG.setname '.mat'];
527
+ %
528
+ % save (nome, 'blink', 'horiz', 'vert', 'disc');
529
+ %
530
+ % disp(' ')
531
+ % disp(['Artifact ICs list saved in ' nome]);
532
+ %
533
+ %
534
+ % %% IC show & remove
535
+ % % show all ICs; detected ICs are highlighted in red color. Based on
536
+ % % pop_selectcomps.
537
+ %
538
+ % art = nonzeros( union (union(blink,horiz) , union(vert,disc)) )'; %artifact ICs
539
+ %
540
+ % % [EEG] = pop_selectcomps_ADJ( EEG, 1:size(EEG.icawinv,1), art, horiz, vert, blink, disc,...
541
+ % % soglia_DV, diff_var, soglia_K, meanK, soglia_SED, SED, soglia_SAD, SAD, ...
542
+ % % soglia_TDR, topog_DR, soglia_V, maxvar, soglia_D, maxdin );
543
+ % [EEG] = pop_selectcomps_ADJ( EEG, 1:size(EEG.icawinv,1), art, horiz, vert, blink, disc,...
544
+ % soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
545
+ % soglia_GDSF, med2_GDSF, topog_DR, soglia_V, med2_V, maxvar, soglia_D, maxdin );
546
+
scripts/ADJUST1.1.1/EM.m ADDED
@@ -0,0 +1,184 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
2
+ %
3
+ % EM - ADJUST package
4
+ %
5
+ % Performs automatic threshold on the digital numbers
6
+ % of the input vector 'vec'; based on Expectation - Maximization algorithm
7
+
8
+ % Reference paper:
9
+ % Bruzzone, L., Prieto, D.F., 2000. Automatic analysis of the difference image
10
+ % for unsupervised change detection.
11
+ % IEEE Trans. Geosci. Remote Sensing 38, 1171:1182
12
+
13
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
14
+ %
15
+ % Usage:
16
+ % >> [last,med1,med2,var1,var2,prior1,prior2]=EM(vec);
17
+ %
18
+ % Input: vec (row vector, to be thresholded)
19
+ %
20
+ % Outputs: last (threshold value)
21
+ % med1,med2 (mean values of the Gaussian-distributed classes 1,2)
22
+ % var1,var2 (variance of the Gaussian-distributed classes 1,2)
23
+ % prior1,prior2 (prior probabilities of the Gaussian-distributed classes 1,2)
24
+ %
25
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
26
+
27
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
28
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
29
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
30
+ %
31
+ % This program is free software; you can redistribute it and/or modify
32
+ % it under the terms of the GNU General Public License as published by
33
+ % the Free Software Foundation; either version 2 of the License, or
34
+ % (at your option) any later version.
35
+ %
36
+ % This program is distributed in the hope that it will be useful,
37
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
38
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
39
+ % GNU General Public License for more details.
40
+ %
41
+ % You should have received a copy of the GNU General Public License
42
+ % along with this program; if not, write to the Free Software
43
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
44
+
45
+
46
+ function [last,med1,med2,var1,var2,prior1,prior2]=EM(vec)
47
+
48
+ if size(vec,2)>1
49
+ len=size(vec,2); %number of elements
50
+ else
51
+ vec=vec';
52
+ len=size(vec,2);
53
+ end
54
+
55
+ c_FA=1; % False Alarm cost
56
+ c_MA=1; % Missed Alarm cost
57
+
58
+ med=mean(vec);
59
+ standard=std(vec);
60
+ mediana=(max(vec)+min(vec))/2;
61
+
62
+ alpha1=0.01*(max(vec)-mediana); % initialization parameter/ righthand side
63
+ alpha2=0.01*(mediana-min(vec)); % initialization parameter/ lefthand side
64
+
65
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
66
+ % EXPECTATION
67
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
68
+
69
+ train1=[]; % Expectation of class 1
70
+ train2=[];
71
+ train=[]; % Expectation of 'unlabeled' samples
72
+
73
+ for i=1:(len)
74
+ if (vec(i)<(mediana-alpha2))
75
+ train2=[train2 vec(i)];
76
+ elseif (vec(i)>(mediana+alpha1))
77
+ train1=[train1 vec(i)];
78
+ else
79
+ train=[train vec(i)];
80
+ end
81
+ end
82
+
83
+ n1=length(train1);
84
+ n2=length(train2);
85
+
86
+ med1=mean(train1);
87
+ med2=mean(train2);
88
+ prior1=n1/(n1+n2);
89
+ prior2=n2/(n1+n2);
90
+ var1=var(train1);
91
+ var2=var(train2);
92
+
93
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
94
+ % MAXIMIZATION
95
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
96
+
97
+ count=0;
98
+ dif_med_1=1; % difference between current and previous mean
99
+ dif_med_2=1;
100
+ dif_var_1=1; % difference between current and previous variance
101
+ dif_var_2=1;
102
+ dif_prior_1=1; % difference between current and previous prior
103
+ dif_prior_2=1;
104
+ stop=0.0001;
105
+
106
+ while((dif_med_1>stop)&&(dif_med_2>stop)&&(dif_var_1>stop)&&(dif_var_2>stop)&&(dif_prior_1>stop)&&(dif_prior_2>stop))
107
+
108
+ count=count+1;
109
+
110
+ med1_old=med1;
111
+ med2_old=med2;
112
+ var1_old=var1;
113
+ var2_old=var2;
114
+ prior1_old=prior1;
115
+ prior2_old=prior2;
116
+ prior1_i=[];
117
+ prior2_i=[];
118
+
119
+ % FOLLOWING FORMULATION IS ACCORDING TO REFERENCE PAPER:
120
+
121
+ for i=1:len
122
+ prior1_i=[prior1_i prior1_old*Bayes(med1_old,var1_old,vec(i))/...
123
+ (prior1_old*Bayes(med1_old,var1_old,vec(i))+prior2_old*Bayes(med2_old,var2_old,vec(i)))];
124
+ prior2_i=[prior2_i prior2_old*Bayes(med2_old,var2_old,vec(i))/...
125
+ (prior1_old*Bayes(med1_old,var1_old,vec(i))+prior2_old*Bayes(med2_old,var2_old,vec(i)))];
126
+ end
127
+
128
+
129
+ prior1=sum(prior1_i)/len;
130
+ prior2=sum(prior2_i)/len;
131
+ med1=sum(prior1_i.*vec)/(prior1*len);
132
+ med2=sum(prior2_i.*vec)/(prior2*len);
133
+ var1=sum(prior1_i.*((vec-med1_old).^2))/(prior1*len);
134
+ var2=sum(prior2_i.*((vec-med2_old).^2))/(prior2*len);
135
+
136
+ dif_med_1=abs(med1-med1_old);
137
+ dif_med_2=abs(med2-med2_old);
138
+ dif_var_1=abs(var1-var1_old);
139
+ dif_var_2=abs(var2-var2_old);
140
+ dif_prior_1=abs(prior1-prior1_old);
141
+ dif_prior_2=abs(prior2-prior2_old);
142
+
143
+ end
144
+
145
+
146
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
147
+ % THRESHOLDING
148
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
149
+
150
+ k=c_MA/c_FA;
151
+ a=(var1-var2)/2;
152
+ b= ((var2*med1)-(var1*med2));
153
+ c=(log((k*prior1*sqrt(var2))/(prior2*sqrt(var1)))*(var2*var1))+(((((med2)^2)*var1)-(((med1)^2)*var2))/2);
154
+ rad=(b^2)-(4*a*c);
155
+ if rad<0
156
+ disp('Negative Discriminant!');
157
+ return;
158
+ end
159
+
160
+ soglia1=(-b+sqrt(rad))/(2*a);
161
+ soglia2=(-b-sqrt(rad))/(2*a);
162
+
163
+ if ((soglia1<med2)||(soglia1>med1))
164
+ last=soglia2;
165
+ else
166
+ last=soglia1;
167
+ end
168
+
169
+ if isnan(last) % TO PREVENT CRASHES
170
+ last=mediana;
171
+ end
172
+
173
+ return
174
+
175
+
176
+
177
+ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
178
+ function prob=Bayes(med,var,point)
179
+ if var==0
180
+ prob=1;
181
+ else
182
+ prob=((1/(sqrt(2*pi*var)))*exp((-1)*((point-med)^2)/(2*var)));
183
+ end
184
+
scripts/ADJUST1.1.1/INSTALLATION.txt ADDED
@@ -0,0 +1,17 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ ADJUST - Automatic EEG artifact Detection with Joint Use of Spatial and Temporal features
3
+
4
+ This package runs in EEGLAB.
5
+ Please copy this folder into your EEGLAB plugins directory, e.g. here:
6
+
7
+ /home/[...]/eeglab13_4_4b/plugins/
8
+
9
+ and then run EEGLAB; ADJUST should appear in the menu Tools -> ADJUST1.1.1
10
+ NOTE: Perform ICA before running ADJUST. ICA is a necessary step.
11
+
12
+
13
+ 2009-2015 Marco Buiatti
14
+ Center for Mind/Brain Sciences, University of Trento, Italy
15
+
16
+ Support contact: adjust.staff@gmail.com
17
+
scripts/ADJUST1.1.1/LICENSE.txt ADDED
@@ -0,0 +1,675 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ 10. Automatic Licensing of Downstream Recipients.
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+ 11. Patents.
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+ A "contributor" is a copyright holder who authorizes use under this
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+ License of the Program or a work on which the Program is based. The
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+ A patent license is "discriminatory" if it does not include within
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+ Nothing in this License shall be construed as excluding or limiting
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+ otherwise be available to you under applicable patent law.
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+
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+ 12. No Surrender of Others' Freedom.
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+
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+ If conditions are imposed on you (whether by court order, agreement or
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+ excuse you from the conditions of this License. If you cannot convey a
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+ 13. Use with the GNU Affero General Public License.
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+ Notwithstanding any other provision of this License, you have
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+ permission to link or combine any covered work with a work licensed
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+ 14. Revised Versions of this License.
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+ The Free Software Foundation may publish revised and/or new versions of
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+ Each version is given a distinguishing version number. If the
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+ If the Program specifies that a proxy can decide which future
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+ to choose that version for the Program.
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+ Later license versions may give you additional or different
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+ permissions. However, no additional obligations are imposed on any
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+ later version.
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+
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+ 15. Disclaimer of Warranty.
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+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
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+ APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
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+ 16. Limitation of Liability.
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+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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+ WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
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+ 17. Interpretation of Sections 15 and 16.
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+ If the disclaimer of warranty and limitation of liability provided
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+ reviewing courts shall apply local law that most closely approximates
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+ Program, unless a warranty or assumption of liability accompanies a
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+ END OF TERMS AND CONDITIONS
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+
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+ How to Apply These Terms to Your New Programs
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+
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+ If you develop a new program, and you want it to be of the greatest
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+ possible use to the public, the best way to achieve this is to make it
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+ free software which everyone can redistribute and change under these terms.
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+ To do so, attach the following notices to the program. It is safest
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+ to attach them to the start of each source file to most effectively
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+ state the exclusion of warranty; and each file should have at least
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+ the "copyright" line and a pointer to where the full notice is found.
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+ <one line to give the program's name and a brief idea of what it does.>
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+ Copyright (C) <year> <name of author>
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+
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+ This program is free software: you can redistribute it and/or modify
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+ it under the terms of the GNU General Public License as published by
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+ the Free Software Foundation, either version 3 of the License, or
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+ (at your option) any later version.
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+
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+ This program is distributed in the hope that it will be useful,
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+ but WITHOUT ANY WARRANTY; without even the implied warranty of
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+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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+ GNU General Public License for more details.
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+
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+ You should have received a copy of the GNU General Public License
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+ along with this program. If not, see <http://www.gnu.org/licenses/>.
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+
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+ Also add information on how to contact you by electronic and paper mail.
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+
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+ If the program does terminal interaction, make it output a short
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+ notice like this when it starts in an interactive mode:
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+
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+ <program> Copyright (C) <year> <name of author>
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+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
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+ This is free software, and you are welcome to redistribute it
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+ under certain conditions; type `show c' for details.
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+
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+ The hypothetical commands `show w' and `show c' should show the appropriate
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+ parts of the General Public License. Of course, your program's commands
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+ might be different; for a GUI interface, you would use an "about box".
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+
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+ You should also get your employer (if you work as a programmer) or school,
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+ if any, to sign a "copyright disclaimer" for the program, if necessary.
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+ For more information on this, and how to apply and follow the GNU GPL, see
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+ <http://www.gnu.org/licenses/>.
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+
669
+ The GNU General Public License does not permit incorporating your program
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+ into proprietary programs. If your program is a subroutine library, you
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+ may consider it more useful to permit linking proprietary applications with
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+ the library. If this is what you want to do, use the GNU Lesser General
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+ Public License instead of this License. But first, please read
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+ <http://www.gnu.org/philosophy/why-not-lgpl.html>.
675
+
scripts/ADJUST1.1.1/computeSAD.m ADDED
@@ -0,0 +1,109 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % computeSAD() - Computes Spatial Average Difference feature
3
+ %
4
+ % Usage:
5
+ % >> [rapp,var_front,var_back,mean_front,mean_back]=computeSAD(topog,chanlocs,n);
6
+ %
7
+ % Inputs:
8
+ % topog - topographies vector
9
+ % chanlocs - EEG.chanlocs struct
10
+ % n - number of ICs
11
+ % nchannels - number of channels
12
+ %
13
+ % Outputs:
14
+ % rapp - SAD values
15
+ % var_front - Frontal Area variance values
16
+ % var_back - Posterior Area variance values
17
+ % mean_front - Frontal Area average values
18
+ % mean_back - Posterior Area average values
19
+ %
20
+ %
21
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
22
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
23
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
24
+ %
25
+ % This program is free software; you can redistribute it and/or modify
26
+ % it under the terms of the GNU General Public License as published by
27
+ % the Free Software Foundation; either version 2 of the License, or
28
+ % (at your option) any later version.
29
+ %
30
+ % This program is distributed in the hope that it will be useful,
31
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
32
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
33
+ % GNU General Public License for more details.
34
+ %
35
+ % You should have received a copy of the GNU General Public License
36
+ % along with this program; if not, write to the Free Software
37
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
38
+
39
+
40
+ function [rapp,var_front,var_back,mean_front,mean_back]=computeSAD(topog,chanlocs,n)
41
+
42
+ nchannels=length(chanlocs);
43
+
44
+ %% Define scalp zones
45
+
46
+ % Find electrodes in Frontal Area (FA)
47
+ dimfront=0; %number of FA electrodes
48
+ index1=zeros(1,nchannels); %indexes of FA electrodes
49
+
50
+ for k=1:nchannels
51
+ if (abs(chanlocs(1,k).theta)<60) && (chanlocs(1,k).radius>0.40) %electrodes are in FA
52
+ dimfront=dimfront+1; %count electrodes
53
+ index1(1,dimfront)=k;
54
+ end
55
+ end
56
+
57
+ % Find electrodes in Posterior Area (PA)
58
+ dimback=0;
59
+ index3=zeros(1,nchannels);
60
+ for h=1:nchannels
61
+ if (abs(chanlocs(1,h).theta)>110)
62
+ dimback=dimback+1;
63
+ index3(1,dimback)=h;
64
+ end
65
+ end
66
+
67
+ if dimfront*dimback==0
68
+ disp('ERROR: no channels included in some scalp areas.')
69
+ disp('Check channels distribution and/or change scalp areas definitions in computeSAD.m and computeSED_NOnorm.m')
70
+ disp('ADJUST session aborted.')
71
+ return
72
+ end
73
+
74
+ %% Outputs
75
+
76
+ rapp=zeros(1,n); % SAD
77
+ mean_front=zeros(1,n); % FA electrodes mean value
78
+ mean_back=zeros(1,n); % PA electrodes mean value
79
+ var_front=zeros(1,n); % FA electrodes variance value
80
+ var_back=zeros(1,n); % PA electrodes variance value
81
+
82
+ %% Output computation
83
+
84
+ for i=1:n % for each topography
85
+
86
+ %create FA electrodes vector
87
+ front=zeros(1,dimfront);
88
+ for h=1:dimfront
89
+ front(1,h)=topog(i,index1(1,h));
90
+ end
91
+
92
+ %create PA electrodes vector
93
+ back=zeros(1,dimback);
94
+ for h=1:dimback
95
+ back(1,h)=topog(i,index3(1,h));
96
+ end
97
+
98
+
99
+
100
+ %compute features
101
+
102
+ rapp(1,i)=abs(mean(front))-abs(mean(back)); % SAD
103
+ mean_front(1,i)=mean(front);
104
+ mean_back(1,i)=mean(back);
105
+ var_back(1,i)=var(back);
106
+ var_front(1,i)=var(front);
107
+
108
+ end
109
+
scripts/ADJUST1.1.1/computeSED_NOnorm.m ADDED
@@ -0,0 +1,121 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % computeSED_NOnorm() - Computes Spatial Eye Difference feature
3
+ % without normalization
4
+ %
5
+ % Usage:
6
+ % >> [out,medie_left,medie_right]=computeSED_NOnorm(topog,chanlocs,n);
7
+ %
8
+ % Inputs:
9
+ % topog - topographies vector
10
+ % chanlocs - EEG.chanlocs struct
11
+ % n - number of ICs
12
+ % nchannels - number of channels
13
+ %
14
+ % Outputs:
15
+ % out - SED values
16
+ % medie_left - Left Eye area average values
17
+ % medie_right- Right Eye area average values
18
+ %
19
+ %
20
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
21
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
22
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
23
+ %
24
+ % This program is free software; you can redistribute it and/or modify
25
+ % it under the terms of the GNU General Public License as published by
26
+ % the Free Software Foundation; either version 2 of the License, or
27
+ % (at your option) any later version.
28
+ %
29
+ % This program is distributed in the hope that it will be useful,
30
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
31
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
32
+ % GNU General Public License for more details.
33
+ %
34
+ % You should have received a copy of the GNU General Public License
35
+ % along with this program; if not, write to the Free Software
36
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
37
+
38
+ function [out,medie_left,medie_right]=computeSED_NOnorm(topog,chanlocs,n)
39
+
40
+ nchannels=length(chanlocs);
41
+
42
+ %% Define scalp zones
43
+
44
+ % Find electrodes in Left Eye area (LE)
45
+ dimleft=0; %number of LE electrodes
46
+ index1=zeros(1,nchannels); %indexes of LE electrodes
47
+
48
+ for k=1:nchannels
49
+ if (-61<chanlocs(1,k).theta) && (chanlocs(1,k).theta<-35) && (chanlocs(1,k).radius>0.30) %electrodes are in LE
50
+ dimleft=dimleft+1; %count electrodes
51
+ index1(1,dimleft)=k;
52
+ end
53
+ end
54
+
55
+ % Find electrodes in Right Eye area (RE)
56
+ dimright=0; %number of RE electrodes
57
+ index2=zeros(1,nchannels); %indexes of RE electrodes
58
+ for g=1:nchannels
59
+ if (34<chanlocs(1,g).theta) && (chanlocs(1,g).theta<61) && (chanlocs(1,g).radius>0.30) %electrodes are in RE
60
+ dimright=dimright+1; %count electrodes
61
+ index2(1,dimright)=g;
62
+ end
63
+ end
64
+
65
+ % Find electrodes in Posterior Area (PA)
66
+ dimback=0;
67
+ index3=zeros(1,nchannels);
68
+ for h=1:nchannels
69
+ if (abs(chanlocs(1,h).theta)>110)
70
+ dimback=dimback+1;
71
+ index3(1,dimback)=h;
72
+ end
73
+ end
74
+
75
+ if dimleft*dimright*dimback==0
76
+ disp('ERROR: no channels included in some scalp areas.')
77
+ disp('Check channels distribution and/or change scalp areas definitions in computeSAD.m and computeSED_NOnorm.m')
78
+ disp('ADJUST session aborted.')
79
+ return
80
+ end
81
+
82
+ %% Outputs
83
+
84
+ out=zeros(1,n); %memorizes SED
85
+ medie_left=zeros(1,n); %memorizes LE mean value
86
+ medie_right=zeros(1,n); %memorizes RE mean value
87
+
88
+ %% Output computation
89
+
90
+ for i=1:n % for each topography
91
+ %create LE electrodes vector
92
+ left=zeros(1,dimleft);
93
+ for h=1:dimleft
94
+ left(1,h)=topog(i,index1(1,h));
95
+ end
96
+
97
+ %create RE electrodes vector
98
+ right=zeros(1,dimright);
99
+ for h=1:dimright
100
+ right(1,h)=topog(i,index2(1,h));
101
+ end
102
+
103
+ %create PA electrodes vector
104
+ back=zeros(1,dimback);
105
+ for h=1:dimback
106
+ back(1,h)=topog(i,index3(1,h));
107
+ end
108
+
109
+
110
+
111
+ %compute features
112
+ out1=abs(mean(left)-mean(right));
113
+ out2=var(back);
114
+ out(1,i)=out1; % SED not notmalized
115
+ medie_left(1,i)=mean(left);
116
+ medie_right(1,i)=mean(right);
117
+
118
+
119
+ end
120
+
121
+
scripts/ADJUST1.1.1/compute_GD_feat.m ADDED
@@ -0,0 +1,71 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % compute_GD_feat() - Computes Generic Discontinuity spatial feature
2
+ %
3
+ % Usage:
4
+ % >> res = compute_GD_feat(topografie,canali,num_componenti);
5
+ %
6
+ % Inputs:
7
+ % topografie - topographies vector
8
+ % canali - EEG.chanlocs struct
9
+ % num_componenti - number of components
10
+ %
11
+ % Outputs:
12
+ % res - GDSF values
13
+
14
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
15
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
16
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
17
+ %
18
+ % This program is free software; you can redistribute it and/or modify
19
+ % it under the terms of the GNU General Public License as published by
20
+ % the Free Software Foundation; either version 2 of the License, or
21
+ % (at your option) any later version.
22
+ %
23
+ % This program is distributed in the hope that it will be useful,
24
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
25
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
26
+ % GNU General Public License for more details.
27
+ %
28
+ % You should have received a copy of the GNU General Public License
29
+ % along with this program; if not, write to the Free Software
30
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
31
+
32
+
33
+ function res = compute_GD_feat(topografie,canali,num_componenti)
34
+
35
+ % Computes GDSF, discontinuity spatial feature
36
+ % topografie is the topography weights matrix
37
+ % canali is the structure EEG.chanlocs
38
+ % num_componenti is the number of ICs
39
+ % res is GDSF values
40
+
41
+ xpos=[canali.X];ypos=[canali.Y];zpos=[canali.Z];
42
+ pos=[xpos',ypos',zpos'];
43
+
44
+ res=zeros(1,num_componenti);
45
+
46
+ for ic=1:num_componenti
47
+
48
+ % consider the vector topografie(ic,:)
49
+
50
+ aux=[];
51
+
52
+ for el=1:length(canali)-1
53
+
54
+ P=pos(el,:); %position of current electrode
55
+ d=pos-repmat(P,length(canali),1);
56
+ %d=pos-repmat(P,62,1);
57
+ dist=sqrt(sum((d.*d),2));
58
+
59
+ [y,I]=sort(dist);
60
+ repchas=I(2:11); % list of 10 nearest channels to el
61
+ weightchas=exp(-y(2:11)); % respective weights, computed wrt distance
62
+
63
+ aux=[aux abs(topografie(ic,el)-mean(weightchas.*topografie(ic,repchas)'))];
64
+ % difference between el and the average of 10 neighbors
65
+ % weighted according to weightchas
66
+ end
67
+
68
+ res(ic)=max(aux);
69
+
70
+ end
71
+
scripts/ADJUST1.1.1/eegplugin_adjust.m ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % eegplugin_adjust() - Plugin for running ADJUST algorithm on EEG data.
3
+ %
4
+ % Usage:
5
+ % >> eegplugin_adjust( fig, try_strings, catch_strings);
6
+ %
7
+ % Inputs:
8
+ %
9
+ % fig - [integer] EEGLAB figure
10
+ % try_strings - [struct] "try" strings for menu callbacks.
11
+ % catch_strings - [struct] "catch" strings for menu callbacks.
12
+ %
13
+ %
14
+ % Copyright (C) 2009-2015 Andrea Mognon (1) and Marco Buiatti (1,2),
15
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
16
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
17
+ %
18
+ % This program is free software; you can redistribute it and/or modify
19
+ % it under the terms of the GNU General Public License as published by
20
+ % the Free Software Foundation; either version 2 of the License, or
21
+ % (at your option) any later version.
22
+ %
23
+ % This program is distributed in the hope that it will be useful,
24
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
25
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
26
+ % GNU General Public License for more details.
27
+ %
28
+ % You should have received a copy of the GNU General Public License
29
+ % along with this program; if not, write to the Free Software
30
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
31
+
32
+
33
+ function eegplugin_adjust( fig, try_strings, catch_strings)
34
+ plotmenu = findobj(fig, 'tag', 'tools');
35
+ uimenu(plotmenu, 'label', 'ADJUST1.1.1', 'callback', ...
36
+ [try_strings.no_check '[ALLEEG,EEG,CURRENTSET,LASTCOM]= pop_ADJUST_interface( ALLEEG,EEG,CURRENTSET );eeglab redraw;' catch_strings.add_to_hist ]);
37
+
38
+
39
+
40
+
scripts/ADJUST1.1.1/interface_ADJ.m ADDED
@@ -0,0 +1,181 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % interface_ADJ() - Run ADJUST algorithm on EEG data
3
+ %
4
+ % Usage:
5
+ % >> EEG=interface_ADJ(EEG,report);
6
+ %
7
+ % Inputs and outputs:
8
+ % EEG - current dataset structure or structure array
9
+ %
10
+ % Input:
11
+ % report - (string) report file name
12
+ %
13
+ %
14
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
15
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
16
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
17
+ %
18
+ % This program is free software; you can redistribute it and/or modify
19
+ % it under the terms of the GNU General Public License as published by
20
+ % the Free Software Foundation; either version 2 of the License, or
21
+ % (at your option) any later version.
22
+ %
23
+ % This program is distributed in the hope that it will be useful,
24
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
25
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
26
+ % GNU General Public License for more details.
27
+ %
28
+ % You should have received a copy of the GNU General Public License
29
+ % along with this program; if not, write to the Free Software
30
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
31
+ %
32
+ %
33
+ % REVISION HISTORY:
34
+ %
35
+ % 09/04/14: dir and filename removed from call of the function because
36
+ % unused (MB).
37
+ %
38
+ % 30/03/14: line 51: added test for ICA and for number of ICs = number of channels
39
+ % (MB).
40
+ %
41
+ % 20/03/14: line 73 commented out to avoid baseline removal. MB.
42
+
43
+ function EEG = interface_ADJ (EEG,report)
44
+
45
+ % Epoching
46
+
47
+ % ----------------------------------------------------
48
+ % | NOTE: epochs are extracted ONLY to make |
49
+ % | ArtifactADJUST run |
50
+ % ----------------------------------------------------
51
+
52
+ % Check that ICA has been computed
53
+ if isempty(EEG.icaweights)
54
+ warning('Please compute ICA before running ADJUST.');
55
+ return;
56
+ end;
57
+
58
+ % Check that number of ICs = number of channels
59
+ if size(EEG.icaweights,1)<size(EEG.icaweights,2)
60
+ disp(' ');
61
+ warning('Number of ICs < number of channels.')
62
+ disp(' ');
63
+ disp('If ICA was not run on all channels, remove the excluded channels before running ADJUST.');
64
+ disp('They can be reintroduced by interpolating them from neighbour channels after artifact removal.');
65
+ disp('If some ICs were removed, please go back one step and run ADJUST on all ICs.')
66
+ disp('The reduced IC statistics could lead to erroneous results.');
67
+ return;
68
+ end;
69
+
70
+ if size(EEG.data,3)==1 % epochs must be extracted
71
+
72
+ lag=5; %epoch duration (in seconds)
73
+ disp(['Continuous dataset epoched in ' num2str(lag) ' sec long epochs to compute feature statistics over time']);
74
+ % check whether '5sec' events are present
75
+ si=0;
76
+ for i=1:length(EEG.event)
77
+ if(strcmp(EEG.event(1,i).type, '5sec')==1)
78
+ si=1;
79
+ end
80
+ end
81
+ if si==0 %add events
82
+ ntrials=floor((EEG.xmax-EEG.xmin)/lag);
83
+ nevents=length(EEG.event);
84
+ for index=1:ntrials
85
+ EEG.event(index+nevents).type='5sec';
86
+ EEG.event(index+nevents).latency=1+(index-1)*lag*EEG.srate; %EEG.srate is the sampling frequency
87
+ latency(index)=1+(index-1)*lag*EEG.srate;
88
+ end;
89
+
90
+ EEG=eeg_checkset(EEG,'eventconsistency');
91
+ end
92
+
93
+ EEGep = pop_epoch( EEG, { '5sec' }, [0 lag], 'newname', [EEG.setname '_ep5'] , 'epochinfo', 'yes');
94
+ % % removing baseline
95
+ % EEGep = pop_rmbase( EEGep, [0 0]);
96
+ EEGep = eeg_checkset(EEGep);
97
+
98
+ % collects ICA data from EEG
99
+ if isempty(EEGep.icaact)
100
+ disp('Warning: EEG.icaact missing! Recomputed from EEG.icaweights, EEG.icasphere and EEG.data');
101
+ % Next instruction: see eeg_checkset
102
+ EEGep.icaact = reshape(EEGep.icaweights*EEGep.icasphere*reshape(EEGep.data(1:size(EEGep.icaweights,1),:,:),[size(EEGep.icaweights,1) size(EEGep.data,2)*size(EEGep.data,3)]),[size(EEGep.icaweights,1) size(EEGep.data,2) size(EEGep.data,3)]);
103
+ end;
104
+
105
+ % Now that dataset is epoched, run ADJUST
106
+ [art, horiz, vert, blink, disc,...
107
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
108
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin]=ADJUST (EEGep,report);
109
+
110
+ %% Saving artifacted ICs for further analysis
111
+
112
+ nome=['List_' EEG.setname '.mat'];
113
+
114
+ save (nome, 'blink', 'horiz', 'vert', 'disc');
115
+
116
+ disp(' ')
117
+ disp(['Artifact ICs list saved in ' nome]);
118
+
119
+ % IC show & remove
120
+ % show all ICs; detected ICs are highlighted in red color. Based on
121
+ % pop_selectcomps.
122
+
123
+ if isempty(EEG.icaact)
124
+
125
+ EEG.icaact = EEG.icaweights*EEG.icasphere*EEG.data;
126
+
127
+ end;
128
+
129
+ EEG = pop_selectcomps_ADJ( EEG, 1:size(EEG.icaweights,1), art, horiz, vert, blink, disc,...
130
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
131
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin );
132
+
133
+ %%
134
+ else % data are epoched... let's work on the existing epochs
135
+
136
+ % collects ICA data from EEG
137
+ if isempty(EEG.icaact)
138
+ disp('Warning: EEG.icaact missing! Recomputed from EEG.icaweights, EEG.icasphere and EEG.data');
139
+ % Next instruction: see eeg_checkset
140
+ EEG.icaact = reshape(EEG.icaweights*EEG.icasphere*reshape(EEG.data(1:size(EEG.icaweights,1),:,:),[size(EEG.icaweights,1) size(EEG.data,2)*size(EEG.data,3)]),[size(EEG.icaweights,1) size(EEG.data,2) size(EEG.data,3)]);
141
+ end;
142
+
143
+ % run ADJUST
144
+ [art, horiz, vert, blink, disc,...
145
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
146
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin]=ADJUST (EEG,report);
147
+
148
+ %% Saving artifacted ICs for further analysis
149
+
150
+ nome=['List_' EEG.setname '.mat'];
151
+
152
+ eb=blink;
153
+ hem=horiz;
154
+ vem=vert;
155
+ gd=disc;
156
+ aic=unique([blink disc horiz vert]);
157
+
158
+ save (nome, 'eb', 'hem', 'vem', 'gd' , 'aic');
159
+
160
+ disp(['Artifact ICs list saved in ' nome]);
161
+ disp(' ')
162
+
163
+
164
+ % IC show & remove
165
+ % show all ICs; detected ICs are highlighted in red color. Based on
166
+ % pop_selectcomps.
167
+ if isempty(EEG.icaact)
168
+ disp('Warning: EEG.icaact missing! Recomputed from EEG.icaweights, EEG.icasphere and EEG.data');
169
+ % Next instruction: see eeg_checkset
170
+ EEG.icaact = reshape(EEG.icaweights*EEG.icasphere*reshape(EEG.data(1:size(EEG.icaweights,1),:,:),[size(EEG.icaweights,1) size(EEG.data,2)*size(EEG.data,3)]),[size(EEG.icaweights,1) size(EEG.data,2) size(EEG.data,3)]);
171
+ end;
172
+
173
+ [EEG]=pop_selectcomps_ADJ( EEG, 1:size(EEG.icaweights,1), art, horiz, vert, blink, disc,...
174
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
175
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin );
176
+
177
+ end
178
+
179
+ return
180
+
181
+
scripts/ADJUST1.1.1/mat2vec.m ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % mat2vec() - reshape a matrix in a vector
2
+ % (Warning: you better use reshape...)
3
+ %
4
+ % Usage:
5
+ % >> vett=mat2vec(mat);
6
+ %
7
+ % Input:
8
+ % mat - 2D or 3D matrix
9
+ %
10
+ % Output:
11
+ % vett - vector
12
+ %
13
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
14
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
15
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
16
+ %
17
+ % This program is free software; you can redistribute it and/or modify
18
+ % it under the terms of the GNU General Public License as published by
19
+ % the Free Software Foundation; either version 2 of the License, or
20
+ % (at your option) any later version.
21
+ %
22
+ % This program is distributed in the hope that it will be useful,
23
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
24
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
25
+ % GNU General Public License for more details.
26
+ %
27
+ % You should have received a copy of the GNU General Public License
28
+ % along with this program; if not, write to the Free Software
29
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
30
+
31
+ function vett=mat2vec(mat)
32
+
33
+ if ndims(mat)==2
34
+ M=size(mat,1);
35
+ N=size(mat,2);
36
+ vett=zeros(1,M*N);
37
+ for i=1:M
38
+ for j=1:N
39
+ vett(1,(i-1)*N+j)=mat(i,j);
40
+ end
41
+ end
42
+ end
43
+
44
+ if ndims(mat)==3
45
+ I=size(mat,1);
46
+ M=size(mat,2);
47
+ N=size(mat,3);
48
+ vett=zeros(1,I*M*N);
49
+ inter=zeros(I,M*N);
50
+ % for i=1:I
51
+ %
52
+ % for k=1:M
53
+ % for l=1:N
54
+ % inter(i,(k-1)*N+l)=mat(i,k,l);
55
+ % end
56
+ % end
57
+ %
58
+ % end
59
+ %
60
+ % for i=1:I
61
+ % for j=1:M*N
62
+ % vett(1,(i-1)*M*N+j)=inter(i,j);
63
+ % end
64
+ % end
65
+
66
+
67
+ %%% for epoch-divided EEG data:
68
+ for i=1:I
69
+
70
+ for l=1:N
71
+ for k=1:M
72
+ inter(i,(l-1)*M+k)=mat(i,k,l);
73
+ end
74
+ end
75
+
76
+ end
77
+
78
+ for i=1:I
79
+ for j=1:M*N
80
+ vett(1,(i-1)*M*N+j)=inter(i,j);
81
+ end
82
+ end
83
+
84
+ end
85
+
86
+
87
+
scripts/ADJUST1.1.1/pop_ADJUST_interface.m ADDED
@@ -0,0 +1,74 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % pop_ADJUST_interface() - running ADJUST algorithm on EEG data
2
+ %
3
+ % Usage:
4
+ % >> [ALLEEG,EEG,CURRENTSET,com] = pop_ADJUST_interface (
5
+ % ALLEEG,EEG,CURRENTSET );
6
+ %
7
+ % Inputs and outputs:
8
+ % ALLEEG - array of EEG dataset structures
9
+ % EEG - current dataset structure or structure array
10
+ % CURRENTSET - index(s) of the current EEG dataset(s) in ALLEEG
11
+ %
12
+ %
13
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
14
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
15
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
16
+ %
17
+ % This program is free software; you can redistribute it and/or modify
18
+ % it under the terms of the GNU General Public License as published by
19
+ % the Free Software Foundation; either version 2 of the License, or
20
+ % (at your option) any later version.
21
+ %
22
+ % This program is distributed in the hope that it will be useful,
23
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
24
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
25
+ % GNU General Public License for more details.
26
+ %
27
+ % You should have received a copy of the GNU General Public License
28
+ % along with this program; if not, write to the Free Software
29
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
30
+ %
31
+ %
32
+ % REVISION HISTORY:
33
+ % 09/04/14: Filter/Gross Artifact Rejection/ICA have been removed (MB).
34
+
35
+
36
+ function [ALLEEG,EEG,CURRENTSET,com] = pop_ADJUST_interface ( ALLEEG,EEG,CURRENTSET )
37
+
38
+ % the command output is a hidden output that does not have to
39
+ % be described in the header
40
+
41
+ com = ''; % this initialization ensure that the function will return something
42
+ % if the user press the cancel button
43
+
44
+ % display help if not enough arguments
45
+ % ------------------------------------
46
+ if nargin < 1
47
+ help pop_ADJUST_interface;
48
+ return;
49
+ end;
50
+
51
+ %% select operations to be done: display list
52
+
53
+ % messages={'Filter the data';'Remove Gross Artifacts and Perform ICA'; 'Run ADJUST'};
54
+ %
55
+ % [Selection,ok] = listdlg('ListString',messages,'Name','ADJUST User Interface',...
56
+ % 'PromptString','Select operations to be done:',...
57
+ % 'OKString','Start Processing','SelectionMode','multiple','ListSize',[300 100]);
58
+
59
+ disp(' ')
60
+ disp (['Running ADJUST on dataset ' strrep(EEG.filename, '.set', '') '.set'])
61
+ promptstr = { 'Enter Report file name (in quote): '};
62
+ inistr = { '''report.txt''' };
63
+ result = inputdlg2( promptstr, 'ADJUST User Interface', 1, inistr, 'pop_ADJUST_interface');
64
+ if length( result ) == 0 return; end;
65
+
66
+ report = eval( [ '[' result{1} ']' ] );
67
+
68
+ [EEG] = interface_ADJ (EEG,report);
69
+
70
+ % return the string command
71
+ % -------------------------
72
+ com = sprintf('pop_ADJUST_interface( %s );', EEG.filename);
73
+
74
+ return;
scripts/ADJUST1.1.1/pop_prop_ADJ.m ADDED
@@ -0,0 +1,477 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % pop_prop_ADJ() - overloaded pop_prop() for ADJUST plugin.
2
+ % plot the properties of a channel or of an independent component.
3
+ % ADJUST feature values are also shown (normalized wrt threshold).
4
+ %
5
+ %
6
+ % Usage:
7
+ % >> com = pop_prop_ADJ(EEG, typecomp, numcompo, winhandle, is_H, is_V, is_B, is_D,...
8
+ % soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
9
+ % soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin)
10
+ %
11
+ % Inputs:
12
+ % EEG - current dataset structure or structure array
13
+ % typecomp - [0|1] compute electrode property (1) or component
14
+ % property (0). Default is 1.
15
+ % numcompo - channel or component number
16
+ % winhandle - if this parameter is present or non-NaN, buttons for the
17
+ % rejection of the component are drawn. If
18
+ % non-zero, this parameter is used to backpropagate
19
+ % the color of the rejection button.
20
+ % is_H - (bool) true if plotted IC is HEM
21
+ % is_V - (bool) true if plotted IC is VEM
22
+ % is_B - (bool) true if plotted IC is EB
23
+ % is_D - (bool) true if plotted IC is GD
24
+ % soglia_DV - feature1 (SVD) threshold
25
+ % diff_var - feature1 (SVD) vector
26
+ % soglia_K - feature2 (TK) threshold
27
+ % meanK - feature2 (TK) vector
28
+ % soglia_SED - feature3 (SED) threshold
29
+ % SED - feature3 (SED) vector
30
+ % soglia_SAD - feature4 (SAD) threshold
31
+ % SAD - feature4 (SAD) vector
32
+ % soglia_TDR - feature5 (SDR) threshold
33
+ % topog_DR - feature5 (SDR) vector
34
+ % soglia_V - feature6 (MEV) threshold
35
+ % maxvar - feature6 (MEV) vector
36
+ % soglia_D - feature7 (MEDR) threshold
37
+ % maxdin - feature7 (MEDR) vector
38
+ %
39
+
40
+ % ORIGINAL HELP:
41
+ % pop_prop() - plot the properties of a channel or of an independent
42
+ % component.
43
+ % Usage:
44
+ % >> pop_prop( EEG, typecomp); % pops up a query window
45
+ % >> pop_prop( EEG, typecomp, chan, winhandle);
46
+ %
47
+ % Inputs:
48
+ % EEG - dataset structure (see EEGGLOBAL)
49
+ % typecomp - [0|1] compute electrode property (1) or component
50
+ % property (0). Default is 1.
51
+ % chan - channel or component number
52
+ % winhandle - if this parameter is present or non-NaN, buttons for the
53
+ % rejection of the component are drawn. If
54
+ % non-zero, this parameter is used to backpropagate
55
+ % the color of the rejection button.
56
+ % spectral_options - [cell array] cell arry of options for the spectopo()
57
+ % function.
58
+ %
59
+
60
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
61
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
62
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
63
+ %
64
+ % This program is free software; you can redistribute it and/or modify
65
+ % it under the terms of the GNU General Public License as published by
66
+ % the Free Software Foundation; either version 2 of the License, or
67
+ % (at your option) any later version.
68
+ %
69
+ % This program is distributed in the hope that it will be useful,
70
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
71
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
72
+ % GNU General Public License for more details.
73
+ %
74
+ % You should have received a copy of the GNU General Public License
75
+ % along with this program; if not, write to the Free Software
76
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
77
+ %
78
+ %
79
+ %
80
+ % VERSIONS LOG
81
+ %
82
+ % 26/03/14:
83
+ %
84
+
85
+ function com = pop_prop_ADJ(EEG, typecomp, numcompo, winhandle, is_H, is_V, is_B, is_D,...
86
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
87
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin) %,spec_opt)
88
+
89
+ com = '';
90
+ if nargin < 1
91
+ help pop_prop_ADJ;
92
+ return;
93
+ end;
94
+
95
+ if nargin == 1
96
+ typecomp = 1;
97
+ end;
98
+ if typecomp == 0 & isempty(EEG.icaweights)
99
+ error('No ICA weights recorded for this set, first run ICA');
100
+ end;
101
+ if nargin == 2
102
+ promptstr = { fastif(typecomp,'Channel number to plot:','Component number to plot:') ...
103
+ 'Spectral options (see spectopo help):' };
104
+ inistr = { '1' '''freqrange'', [2 50]' };
105
+ result = inputdlg2( promptstr, 'Component properties - pop_prop_ADJ()', 1, inistr, 'pop_prop_ADJ');
106
+ if size( result, 1 ) == 0 return; end;
107
+
108
+ numcompo = eval( [ '[' result{1} ']' ] );
109
+ spec_opt = eval( [ '{' result{2} '}' ] );
110
+ end;
111
+
112
+ % plotting several component properties - STILL TO CHANGE
113
+ % -------------------------------------
114
+ if length(numcompo) > 1
115
+ for index = numcompo
116
+ pop_prop(EEG, typecomp, index);
117
+ end;
118
+ com = sprintf('pop_prop( %s, %d, [%s]);', inputname(1), typecomp, int2str(numcompo));
119
+ return;
120
+ end;
121
+
122
+ if numcompo < 1 | numcompo > EEG.nbchan
123
+ error('Component index out of range');
124
+ end;
125
+
126
+ % assumed input is numcompo
127
+ % -------------------------
128
+ try, icadefs;
129
+ catch,
130
+ BACKCOLOR = [0.8 0.8 0.8];
131
+ GUIBUTTONCOLOR = [0.8 0.8 0.8];
132
+ end;
133
+ basename = [fastif(typecomp,'Channel ', 'Component ') int2str(numcompo) ];
134
+
135
+ fh = figure('name', ['pop_prop_ADJ() - ' basename ' properties'], 'color', BACKCOLOR, 'numbertitle', 'off', 'visible', 'off');
136
+ pos = get(gcf,'Position');
137
+ set(gcf,'Position', [pos(1) pos(2)-500+pos(4) 500 500], 'visible', 'on');
138
+ pos = get(gca,'position'); % plot relative to current axes
139
+ hh = gca;
140
+ q = [pos(1) pos(2) 0 0];
141
+ s = [pos(3) pos(4) pos(3) pos(4)]./100;
142
+ axis off;
143
+
144
+ % plotting topoplot
145
+ % -----------------
146
+ h = axes('Units','Normalized', 'Position',[-10 65 40 35].*s+q);
147
+
148
+ %topoplot( EEG.icawinv(:,numcompo), EEG.chanlocs); axis square;
149
+
150
+ if typecomp == 1 % plot single channel locations
151
+ topoplot( numcompo, EEG.chanlocs, 'chaninfo', EEG.chaninfo, ...
152
+ 'electrodes','off', 'style', 'blank', 'emarkersize1chan', 12); axis square;
153
+ else % plot component map
154
+ topoplot( EEG.icawinv(:,numcompo), EEG.chanlocs, 'chaninfo', EEG.chaninfo, ...
155
+ 'shading', 'interp', 'numcontour', 3); axis square;
156
+ end;
157
+ basename = [fastif(typecomp,'Channel ', 'IC') int2str(numcompo) ];
158
+ % title([ basename fastif(typecomp, ' location', ' map')], 'fontsize', 14);
159
+ title(basename, 'fontsize', 12);
160
+
161
+ % plotting erpimage
162
+ % -----------------
163
+ hhh = axes('Units','Normalized', 'Position',[45 67 48 33].*s+q); %era height 38
164
+ eeglab_options;
165
+ if EEG.trials > 1
166
+ % put title at top of erpimage
167
+ axis off
168
+ hh = axes('Units','Normalized', 'Position',[45 67 48 33].*s+q);
169
+ EEG.times = linspace(EEG.xmin, EEG.xmax, EEG.pnts);
170
+ if EEG.trials < 6
171
+ ei_smooth = 1;
172
+ else
173
+ ei_smooth = 3;
174
+ end
175
+ if typecomp == 1 % plot component
176
+ offset = nan_mean(EEG.data(numcompo,:));
177
+ erpimage( EEG.data(numcompo,:)-offset, ones(1,EEG.trials)*10000, EEG.times , ...
178
+ '', ei_smooth, 1, 'caxis', 2/3, 'cbar','erp');
179
+ else % plot channel
180
+ if option_computeica
181
+ offset = nan_mean(EEG.icaact(numcompo,:));
182
+ erpimage( EEG.icaact(numcompo,:)-offset, ones(1,EEG.trials)*10000, EEG.times , ...
183
+ '', ei_smooth, 1, 'caxis', 2/3, 'cbar','erp', 'yerplabel', '');
184
+ else
185
+
186
+ icaacttmp = (EEG.icaweights(numcompo,:) * EEG.icasphere) ...
187
+ * reshape(EEG.data(1:size(EEG.icaweights,1),:,:), EEG.nbchan, EEG.trials*EEG.pnts);
188
+ % icaacttmp = (EEG.icaweights(numcompo,:) * EEG.icasphere) ...
189
+ % * EEG.data(EEG.nbchan, EEG.trials*EEG.pnts);
190
+ offset = nan_mean(icaacttmp);
191
+ erpimage( icaacttmp-offset, ones(1,EEG.trials)*10000, EEG.times, ...
192
+ '', ei_smooth, 1, 'caxis', 2/3, 'cbar','erp', 'yerplabel', '');
193
+ end;
194
+ end;
195
+ axes(hhh);
196
+ title(sprintf('%s activity \\fontsize{10}(global offset %3.3f)', basename, offset), 'fontsize', 12);
197
+ else
198
+
199
+ % put title at top of erpimage
200
+ EI_TITLE = 'Continous data';
201
+ axis off
202
+ hh = axes('Units','Normalized', 'Position',[45 62 48 38].*s+q);
203
+ ERPIMAGELINES = 200; % show 200-line erpimage
204
+ while size(EEG.data,2) < ERPIMAGELINES*EEG.srate
205
+ ERPIMAGELINES = round(0.9 * ERPIMAGELINES);
206
+ end
207
+ if ERPIMAGELINES > 2 % give up if data too small
208
+ if ERPIMAGELINES < 10
209
+ ei_smooth == 1;
210
+ else
211
+ ei_smooth = 3;
212
+ end
213
+ erpimageframes = floor(size(EEG.data,2)/ERPIMAGELINES);
214
+ erpimageframestot = erpimageframes*ERPIMAGELINES;
215
+ eegtimes = linspace(0, erpimageframes-1, EEG.srate/1000);
216
+ if typecomp == 1 % plot component
217
+ offset = nan_mean(EEG.data(numcompo,:));
218
+ erpimage( reshape(EEG.data(numcompo,1:erpimageframestot),erpimageframes,ERPIMAGELINES)-offset, ones(1,ERPIMAGELINES)*10000, eegtimes , ...
219
+ EI_TITLE, ei_smooth, 1, 'caxis', 2/3, 'cbar');
220
+ else % plot channel
221
+ if option_computeica
222
+ offset = nan_mean(EEG.icaact(numcompo,:));
223
+ erpimage( ...
224
+ reshape(EEG.icaact(numcompo,1:erpimageframestot),erpimageframes,ERPIMAGELINES)-offset, ...
225
+ ones(1,ERPIMAGELINES)*10000, eegtimes , ...
226
+ EI_TITLE, ei_smooth, 1, 'caxis', 2/3, 'cbar','yerplabel', '');
227
+ else
228
+ % icaacttmp = reshape(EEG.icaweights(numcompo,:) * EEG.icasphere) ...
229
+ % * reshape(EEG.data, erpimageframes, ERPIMAGELINES);
230
+
231
+ icaacttmp = EEG.icaweights(numcompo,:) * EEG.icasphere ...
232
+ *EEG.data(:,1:erpimageframes*ERPIMAGELINES);
233
+
234
+ offset = nan_mean(icaacttmp);
235
+ erpimage( icaacttmp-offset, ones(1,ERPIMAGELINES)*10000, eegtimes, ...
236
+ EI_TITLE, ei_smooth, 1, 'caxis', 2/3, 'cbar', 'yerplabel', '');
237
+ end;
238
+ end
239
+ else
240
+ axis off;
241
+ text(0.1, 0.3, [ 'No erpimage plotted' 10 'for small continuous data']);
242
+ end;
243
+ axes(hhh);
244
+ end;
245
+
246
+ % plotting spectrum
247
+ % -----------------
248
+ if ~exist('winhandle')
249
+ winhandle = NaN;
250
+ end;
251
+ if ~isnan(winhandle)
252
+ h = axes('units','normalized', 'position',[10 25 85 25].*s+q);
253
+ %h = axes('units','normalized', 'position',[5 10 95 35].*s+q); %%%
254
+ %CHANGE!
255
+ else
256
+ h = axes('units','normalized', 'position',[10 15 85 30].*s+q);
257
+ %h = axes('units','normalized', 'position',[5 0 95 40].*s+q); %%%
258
+ %CHANGE!
259
+ end;
260
+ %h = axes('units','normalized', 'position',[45 5 60 40].*s+q);
261
+ try
262
+ eeglab_options;
263
+ %next instr added for correct function! Andrea
264
+ option_computeica=1;
265
+ if typecomp == 1
266
+ %[spectra freqs] = spectopo( EEG.data(numcompo,:), EEG.pnts, EEG.srate, spec_opt{:},'freqrange', [0 45] );
267
+ [spectra freqs] = spectopo( EEG.data(numcompo,:), EEG.pnts, EEG.srate, 'freqrange', [0 45] );
268
+ else
269
+ if option_computeica
270
+
271
+ %[spectra freqs] = spectopo( EEG.icaact(numcompo,:), EEG.pnts, EEG.srate, 'mapnorm', EEG.icawinv(:,numcompo), spec_opt{:}, 'freqrange', [0 45]);
272
+ % CONTROL ADDED FOR CONTINUOUS DATA
273
+ if size(EEG.data,3)==1
274
+ EEG.icaact = EEG.icaweights*EEG.icasphere*EEG.data;
275
+ end
276
+ [spectra freqs] = spectopo( EEG.icaact(numcompo,:), EEG.pnts, EEG.srate, 'mapnorm', EEG.icawinv(:,numcompo), 'freqrange', [0 45]);
277
+ else
278
+ if exist('icaacttmp')~=1,
279
+
280
+ icaacttmp = (EEG.icaweights(numcompo,:)*EEG.icasphere)*reshape(EEG.data, EEG.nbchan, EEG.trials*EEG.pnts);
281
+ end;
282
+
283
+ %[spectra freqs] = spectopo( icaacttmp, EEG.pnts, EEG.srate, 'mapnorm', EEG.icawinv(:,numcompo), spec_opt{:} ,'freqrange', [0 45]);
284
+ [spectra freqs] = spectopo( icaacttmp, EEG.pnts, EEG.srate, 'mapnorm', EEG.icawinv(:,numcompo), 'freqrange', [0 45]);
285
+ end;
286
+ end;
287
+ set(gca,'fontsize',8);
288
+ % set up new limits
289
+ % -----------------
290
+ %freqslim = 50;
291
+ %set(gca, 'xlim', [0 min(freqslim, EEG.srate/2)]);
292
+ %spectra = spectra(find(freqs <= freqslim));
293
+ %set(gca, 'ylim', [min(spectra) max(spectra)]);
294
+
295
+ %tmpy = get(gca, 'ylim');
296
+ %set(gca, 'ylim', [max(tmpy(1),-1) tmpy(2)]);
297
+ set( get(gca, 'ylabel'), 'string', 'Power 10*log_{10}(\muV^{2}/Hz)', 'fontsize', 8);
298
+ set( get(gca, 'xlabel'), 'string', 'Frequency (Hz)', 'fontsize', 8);
299
+ title('Activity power spectrum', 'fontsize', 12);
300
+ catch
301
+ axis off;
302
+ text(0.1, 0.3, [ 'Error: no spectrum plotted' 10 ' make sure you have the ' 10 'signal processing toolbox']);
303
+ end;
304
+
305
+ % ----------------------------------------------------------------
306
+ % plotting IC properties
307
+ % -----------------
308
+ if ~exist('winhandle')
309
+ winhandle = NaN;
310
+ end;
311
+ if ~isnan(winhandle)
312
+ h = axes('units','normalized', 'position',[3 2 95 10].*s+q);
313
+ else
314
+ h = axes('units','normalized', 'position',[3 0 95 10].*s+q);
315
+ end;
316
+
317
+ axis off
318
+ str='ADJUST - Detected as ';
319
+ if is_H
320
+ str=[str 'HEM '];
321
+ end
322
+ if is_V
323
+ str=[str 'VEM '];
324
+ end
325
+ if is_B
326
+ str=[str 'EB '];
327
+ end
328
+ if is_D
329
+ str=[str 'GD'];
330
+ end
331
+
332
+ if (is_H || is_V || is_B || is_D)==0
333
+ str='ADJUST - Not detected';
334
+ end
335
+ % text(0,0,[str 10 'TK ' num2str(meanK) '(' num2str(soglia_K) '); SAD ' num2str(SAD) '(' num2str(soglia_SAD) ...
336
+ % '); SVD ' num2str(diff_var) '(' num2str(soglia_DV) '); SED ' num2str(SED) '(' num2str(soglia_SED) ...
337
+ % ')' 10 'MEDR ' num2str(maxdin) '(' num2str(soglia_D) '); MEV ' num2str(maxvar) '(' num2str(soglia_V) ...
338
+ % '); SDR ' num2str(topog_DR) '(' num2str(soglia_TDR) ')'],'FontSize',8);
339
+
340
+ % compute bar graph entries
341
+ % E=[ SAD/soglia_SAD SED/soglia_SED GDSF/soglia_GDSF maxvar/soglia_V meanK/soglia_K];
342
+ E=[(SAD-med2_SAD)/(soglia_SAD-med2_SAD) (SED-med2_SED)/(soglia_SED-med2_SED) (GDSF-med2_GDSF)/(soglia_GDSF-med2_GDSF) (maxvar-med2_V)/(soglia_V-med2_V) (meanK-med2_K)/(soglia_K-med2_K)];
343
+
344
+ % set bar colors
345
+ C={[1 0 0],[.6 0 .2],[1 1 0],[0 1 0], [0 1 1]};
346
+ % horizontal line
347
+ l=ones([1, length(E)+2]);
348
+ % plot
349
+ plot(0:length(E)+1 , l , 'Linewidth',2,'Color','k');
350
+ hold on
351
+ for i=1:length(E)
352
+ v=zeros(1,length(E));
353
+ v(i)=E(i);
354
+ bar(v,'facecolor',C{i});
355
+ title(str);
356
+ set(gca,'XTickLabel',{'';'SAD';'SED';'GDSF';'MEV';'TK';''},'YTickLabel',{'0';'Threshold';'2*Threshold'},'YLim',[0 2])
357
+ end
358
+
359
+
360
+
361
+
362
+ % -----------------------------------------------------------------
363
+
364
+
365
+ % display buttons
366
+ % ---------------
367
+
368
+ if ~isnan(winhandle)
369
+ COLREJ = '[1 0.6 0.6]';
370
+ COLACC = '[0.75 1 0.75]';
371
+ % CANCEL button
372
+ % -------------
373
+ h = uicontrol(gcf, 'Style', 'pushbutton', 'backgroundcolor', GUIBUTTONCOLOR, 'string', 'Cancel', 'Units','Normalized','Position',[-10 -10 15 6].*s+q, 'callback', 'close(gcf);');
374
+
375
+ % VALUE button
376
+ % -------------
377
+ hval = uicontrol(gcf, 'Style', 'pushbutton', 'backgroundcolor', GUIBUTTONCOLOR, 'string', 'Values', 'Units','Normalized', 'Position', [15 -10 15 6].*s+q);
378
+
379
+ % REJECT button
380
+ % -------------
381
+ status = EEG.reject.gcompreject(numcompo);
382
+ hr = uicontrol(gcf, 'Style', 'pushbutton', 'backgroundcolor', eval(fastif(status,COLREJ,COLACC)), ...
383
+ 'string', fastif(status, 'REJECT', 'ACCEPT'), 'Units','Normalized', 'Position', [40 -10 15 6].*s+q, 'userdata', status, 'tag', 'rejstatus');
384
+ command = [ 'set(gcbo, ''userdata'', ~get(gcbo, ''userdata''));' ...
385
+ 'if get(gcbo, ''userdata''),' ...
386
+ ' set( gcbo, ''backgroundcolor'',' COLREJ ', ''string'', ''REJECT'');' ...
387
+ 'else ' ...
388
+ ' set( gcbo, ''backgroundcolor'',' COLACC ', ''string'', ''ACCEPT'');' ...
389
+ 'end;' ];
390
+ set( hr, 'callback', command);
391
+
392
+ % HELP button
393
+ % -------------
394
+ h = uicontrol(gcf, 'Style', 'pushbutton', 'backgroundcolor', GUIBUTTONCOLOR, 'string', 'HELP', 'Units','Normalized', 'Position', [65 -10 15 6].*s+q, 'callback', 'pophelp(''pop_prop_ADJ'');');
395
+
396
+ % OK button
397
+ % ---------
398
+ command = [ 'global EEG;' ...
399
+ 'tmpstatus = get( findobj(''parent'', gcbf, ''tag'', ''rejstatus''), ''userdata'');' ...
400
+ 'EEG.reject.gcompreject(' num2str(numcompo) ') = tmpstatus;' ];
401
+ if winhandle ~= 0
402
+ command = [ command ...
403
+ sprintf('if tmpstatus set(%3.15f, ''backgroundcolor'', %s); else set(%3.15f, ''backgroundcolor'', %s); end;', ...
404
+ winhandle, COLREJ, winhandle, COLACC)];
405
+ end;
406
+ command = [ command 'close(gcf); clear tmpstatus' ];
407
+ h = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'OK', 'backgroundcolor', GUIBUTTONCOLOR, 'Units','Normalized', 'Position',[90 -10 15 6].*s+q, 'callback', command);
408
+
409
+ % draw the figure for statistical values
410
+ % --------------------------------------
411
+ index = num2str( numcompo );
412
+ command = [ ...
413
+ 'figure(''MenuBar'', ''none'', ''name'', ''Statistics of the component'', ''numbertitle'', ''off'');' ...
414
+ '' ...
415
+ 'pos = get(gcf,''Position'');' ...
416
+ 'set(gcf,''Position'', [pos(1) pos(2) 340 340]);' ...
417
+ 'pos = get(gca,''position'');' ...
418
+ 'q = [pos(1) pos(2) 0 0];' ...
419
+ 's = [pos(3) pos(4) pos(3) pos(4)]./100;' ...
420
+ 'axis off;' ...
421
+ '' ...
422
+ 'txt1 = sprintf(''(\n' ...
423
+ 'Entropy of component activity\t\t%2.2f\n' ...
424
+ '> Rejection threshold \t\t%2.2f\n\n' ...
425
+ ' AND \t\t\t----\n\n' ...
426
+ 'Kurtosis of component activity\t\t%2.2f\n' ...
427
+ '> Rejection threshold \t\t%2.2f\n\n' ...
428
+ ') OR \t\t\t----\n\n' ...
429
+ 'Kurtosis distibution \t\t\t%2.2f\n' ...
430
+ '> Rejection threhold\t\t\t%2.2f\n\n' ...
431
+ '\n' ...
432
+ 'Current thesholds sujest to %s the component\n\n' ...
433
+ '(after manually accepting/rejecting the component, you may recalibrate thresholds for future automatic rejection on other datasets)'',' ...
434
+ 'EEG.stats.compenta(' index '), EEG.reject.threshentropy, EEG.stats.compkurta(' index '), ' ...
435
+ 'EEG.reject.threshkurtact, EEG.stats.compkurtdist(' index '), EEG.reject.threshkurtdist, fastif(EEG.reject.gcompreject(' index '), ''REJECT'', ''ACCEPT''));' ...
436
+ '' ...
437
+ 'uicontrol(gcf, ''Units'',''Normalized'', ''Position'',[-11 4 117 100].*s+q, ''Style'', ''frame'' );' ...
438
+ 'uicontrol(gcf, ''Units'',''Normalized'', ''Position'',[-5 5 100 95].*s+q, ''String'', txt1, ''Style'',''text'', ''HorizontalAlignment'', ''left'' );' ...
439
+ 'h = uicontrol(gcf, ''Style'', ''pushbutton'', ''string'', ''Close'', ''Units'',''Normalized'', ''Position'', [35 -10 25 10].*s+q, ''callback'', ''close(gcf);'');' ...
440
+ 'clear txt1 q s h pos;' ];
441
+ set( hval, 'callback', command);
442
+ if isempty( EEG.stats.compenta )
443
+ set(hval, 'enable', 'off');
444
+ end;
445
+
446
+ % MODIFICA
447
+ %com = sprintf('pop_prop( %s, %d, %d, 0, %s);', inputname(1), typecomp, numcompo, vararg2str( { spec_opt } ) );
448
+ com = sprintf('pop_prop_ADJ( %s, %d, %d, 0, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %s);',...
449
+ inputname(1), typecomp, numcompo, is_H, is_V, is_B, is_D,...
450
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
451
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin );
452
+
453
+ else
454
+ %com = sprintf('pop_prop( %s, %d, %d, NaN, %s);', inputname(1), typecomp, numcompo, vararg2str( { spec_opt } ) );
455
+ com = sprintf('pop_prop_ADJ( %s, %d, %d, NaN, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %s);',...
456
+ inputname(1), typecomp, numcompo, is_H, is_V, is_B, is_D,...
457
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
458
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin );
459
+
460
+ end;
461
+
462
+ return;
463
+
464
+ function out = nan_mean(in)
465
+
466
+ nans = find(isnan(in));
467
+ in(nans) = 0;
468
+ sums = sum(in);
469
+ nonnans = ones(size(in));
470
+ nonnans(nans) = 0;
471
+ nonnans = sum(nonnans);
472
+ nononnans = find(nonnans==0);
473
+ nonnans(nononnans) = 1;
474
+ out = sum(in)./nonnans;
475
+ out(nononnans) = NaN;
476
+
477
+
scripts/ADJUST1.1.1/pop_selectcomps_ADJ.m ADDED
@@ -0,0 +1,244 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % pop_selectcomps_ADJ() - Display components with button to vizualize their
3
+ % properties and feature values and label them for
4
+ % rejection. ADJUST detected ICs are highlighter in red
5
+ % color. Based on pop_selectcomps.
6
+ %
7
+ % Usage:
8
+ % >> [EEG,com] = pop_selectcomps_ADJ( EEG, compnum, art, horiz, vert, blink, disc,...
9
+ % soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
10
+ % soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin, fig )
11
+ %
12
+ % Inputs:
13
+ % EEG - current dataset structure or structure array
14
+ % compnum - vector of component numbers
15
+ % art - vector of artifact components numbers
16
+ % horiz - vector of HEM components numbers
17
+ % vert - vector of VEM components numbers
18
+ % blink - vector of EB components numbers
19
+ % disc - vector of GD components numbers
20
+ % soglia_DV - feature1 (SVD) threshold
21
+ % diff_var - feature1 (SVD) vector
22
+ % soglia_K - feature2 (TK) threshold
23
+ % meanK - feature2 (TK) vector
24
+ % soglia_SED - feature3 (SED) threshold
25
+ % SED - feature3 (SED) vector
26
+ % soglia_SAD - feature4 (SAD) threshold
27
+ % SAD - feature4 (SAD) vector
28
+ % soglia_TDR - feature5 (SDR) threshold
29
+ % topog_DR - feature5 (SDR) vector
30
+ % soglia_V - feature6 (MEV) threshold
31
+ % maxvar - feature6 (MEV) vector
32
+ % soglia_D - feature7 (MEDR) threshold
33
+ % maxdin - feature7 (MEDR) vector
34
+ %
35
+ % Outputs:
36
+ % EEG - Output dataset with updated rejected components
37
+ %
38
+ %
39
+ %
40
+ % ORIGINAL FUNCTION HELP:
41
+ % pop_selectcomps() - Display components with button to vizualize their
42
+ % properties and label them for rejection.
43
+ % Usage:
44
+ % >> OUTEEG = pop_selectcomps( INEEG, compnum, art );
45
+ %
46
+ % Inputs:
47
+ % INEEG - Input dataset
48
+ % compnum - vector of component numbers
49
+ %
50
+ % Output:
51
+ % OUTEEG - Output dataset with updated rejected components
52
+ %
53
+ %
54
+ %
55
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
56
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
57
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
58
+ %
59
+ % This program is free software; you can redistribute it and/or modify
60
+ % it under the terms of the GNU General Public License as published by
61
+ % the Free Software Foundation; either version 2 of the License, or
62
+ % (at your option) any later version.
63
+ %
64
+ % This program is distributed in the hope that it will be useful,
65
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
66
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
67
+ % GNU General Public License for more details.
68
+ %
69
+ % You should have received a copy of the GNU General Public License
70
+ % along with this program; if not, write to the Free Software
71
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
72
+
73
+ % function [EEG,com] = pop_selectcomps_ADJ( EEG, compnum, art, horiz, vert, blink, disc,...
74
+ % soglia_DV, diff_var, soglia_K, meanK, soglia_SED, SED, soglia_SAD, SAD, ...
75
+ % soglia_GDSF, GDSF, soglia_V, maxvar, soglia_D, maxdin, fig )
76
+ function [EEG,com] = pop_selectcomps_ADJ( EEG, compnum, art, horiz, vert, blink, disc,...
77
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
78
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin, fig )
79
+
80
+ COLREJ = '[1 0.6 0.6]';
81
+ COLACC = '[0.75 1 0.75]';
82
+ COLART = '[1 0 0]';
83
+ PLOTPERFIG = 35;
84
+
85
+ com = '';
86
+ if nargin < 1
87
+ help pop_selectcomps_ADJ;
88
+ return;
89
+ end;
90
+
91
+ if nargin < 2
92
+ promptstr = { 'Components to plot:' };
93
+ initstr = { [ '1:' int2str(size(EEG.icaweights,1)) ] };
94
+
95
+ result = inputdlg2(promptstr, 'Reject comp. by map -- pop_selectcomps',1, initstr);
96
+ if isempty(result), return; end;
97
+ compnum = eval( [ '[' result{1} ']' ]);
98
+
99
+ if length(compnum) > PLOTPERFIG
100
+ ButtonName=questdlg2(strvcat(['More than ' int2str(PLOTPERFIG) ' components so'],'this function will pop-up several windows'), ...
101
+ 'Confirmation', 'Cancel', 'OK','OK');
102
+ if ~isempty( strmatch(lower(ButtonName), 'cancel')), return; end;
103
+ end;
104
+
105
+ end;
106
+
107
+ currentfigtag = ['selcomp' num2str(rand)]; % generate a random figure tag
108
+
109
+ if length(compnum) > PLOTPERFIG
110
+ for index = 1:PLOTPERFIG:length(compnum)
111
+ fprintf('Drawing figure...\n');
112
+ EEG = pop_selectcomps_ADJ(EEG, compnum([index:min(length(compnum),index+PLOTPERFIG-1)]), art, horiz, vert, blink, disc,...
113
+ soglia_DV, diff_var, soglia_K, med2_K, meanK, soglia_SED, med2_SED, SED, soglia_SAD, med2_SAD, SAD, ...
114
+ soglia_GDSF, med2_GDSF, GDSF, soglia_V, med2_V, maxvar, soglia_D, maxdin);
115
+ end;
116
+
117
+ com = [ 'pop_selectcomps(' inputname(1) ', ' vararg2str(compnum) ');' ];
118
+ return;
119
+ end;
120
+
121
+ if isempty(EEG.reject.gcompreject)
122
+ EEG.reject.gcompreject = zeros( size(EEG.icawinv,2));
123
+ end;
124
+ try, icadefs;
125
+ catch,
126
+ BACKCOLOR = [0.8 0.8 0.8];
127
+ GUIBUTTONCOLOR = [0.8 0.8 0.8];
128
+ end;
129
+
130
+ % set up the figure
131
+ % -----------------
132
+ column =ceil(sqrt( length(compnum) ))+1;
133
+ rows = ceil(length(compnum)/column);
134
+ if ~exist('fig')
135
+ figure('name', [ 'Reject components by map - pop_selectcomps_ADJ() (dataset: ' EEG.setname ')'], 'tag', currentfigtag, ...
136
+ 'numbertitle', 'off', 'color', BACKCOLOR);
137
+ set(gcf,'MenuBar', 'none');
138
+ pos = get(gcf,'Position');
139
+ set(gcf,'Position', [pos(1) 20 800/7*column 600/5*rows]);
140
+ incx = 120;
141
+ incy = 110;
142
+ sizewx = 100/column;
143
+ if rows > 2
144
+ sizewy = 90/rows;
145
+ else
146
+ sizewy = 80/rows;
147
+ end;
148
+ pos = get(gca,'position'); % plot relative to current axes
149
+ hh = gca;
150
+ q = [pos(1) pos(2) 0 0];
151
+ s = [pos(3) pos(4) pos(3) pos(4)]./100;
152
+ axis off;
153
+ end;
154
+
155
+ % figure rows and columns
156
+ % -----------------------
157
+ if EEG.nbchan > 64
158
+ disp('More than 64 electrodes: electrode locations not shown');
159
+ plotelec = 0;
160
+ else
161
+ plotelec = 1;
162
+ end;
163
+ count = 1;
164
+ for ri = compnum
165
+ if exist('fig')
166
+ button = findobj('parent', fig, 'tag', ['comp' num2str(ri)]);
167
+ if isempty(button)
168
+ error( 'pop_selectcomps_ADJ(): figure does not contain the component button');
169
+ end;
170
+ else
171
+ button = [];
172
+ end;
173
+
174
+ if isempty( button )
175
+ % compute coordinates
176
+ % -------------------
177
+ X = mod(count-1, column)/column * incx-10;
178
+ Y = (rows-floor((count-1)/column))/rows * incy - sizewy*1.3;
179
+
180
+ % plot the head
181
+ % -------------
182
+ if ~strcmp(get(gcf, 'tag'), currentfigtag);
183
+ disp('Aborting plot');
184
+ return;
185
+ end;
186
+ ha = axes('Units','Normalized', 'Position',[X Y sizewx sizewy].*s+q);
187
+ if plotelec
188
+ topoplot( EEG.icawinv(:,ri), EEG.chanlocs, 'verbose', ...
189
+ 'off', 'style' , 'fill', 'chaninfo', EEG.chaninfo);
190
+ else
191
+ topoplot( EEG.icawinv(:,ri), EEG.chanlocs, 'verbose', ...
192
+ 'off', 'style' , 'fill','electrodes','off', 'chaninfo', EEG.chaninfo);
193
+ end;
194
+ axis square;
195
+
196
+ % plot the button
197
+ % ---------------
198
+ button = double(uicontrol(gcf, 'Style', 'pushbutton', 'Units','Normalized', 'Position',...
199
+ [X Y+sizewy sizewx sizewy*0.25].*s+q, 'tag', ['comp' num2str(ri)]));
200
+ command = sprintf('pop_prop_ADJ( %s, 0, %d, %3.15f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f, %f);', ...
201
+ inputname(1), ri, button, ...
202
+ ~isempty(intersect(horiz,ri)), ~isempty(intersect(vert,ri)), ~isempty(intersect(blink,ri)), ~isempty(intersect(disc,ri)),...
203
+ soglia_DV, diff_var(ri), soglia_K, med2_K, meanK(ri), soglia_SED, med2_SED, SED(ri),...
204
+ soglia_SAD, med2_SAD, SAD(ri), soglia_GDSF, med2_GDSF, GDSF(ri), soglia_V, med2_V, maxvar(ri), soglia_D, maxdin(ri));
205
+ set( button, 'callback', command );
206
+ end;
207
+
208
+ % MODIFY BUTTON COLOR: ARTIFACT IC?
209
+ if isempty( intersect(art,ri)) % NON ARTIFACT
210
+ set( button, 'backgroundcolor', eval(fastif(EEG.reject.gcompreject(ri), COLREJ,COLACC)), 'string', int2str(ri));
211
+ else set( button, 'backgroundcolor', eval(fastif(EEG.reject.gcompreject(ri), COLREJ,COLART)), 'string', int2str(ri));
212
+ end
213
+
214
+ drawnow;
215
+ count = count +1;
216
+ end;
217
+
218
+ % draw the bottom button
219
+ % ----------------------
220
+ if ~exist('fig')
221
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'Cancel', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
222
+ 'Position',[-10 -10 15 sizewy*0.25].*s+q, 'callback', 'close(gcf); fprintf(''Operation cancelled\n'')' );
223
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'Set threhsolds', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
224
+ 'Position',[10 -10 15 sizewy*0.25].*s+q, 'callback', 'pop_icathresh(EEG); pop_selectcomps( EEG, gcbf);' );
225
+ if isempty( EEG.stats.compenta ), set(hh, 'enable', 'off'); end;
226
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'See comp. stats', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
227
+ 'Position',[30 -10 15 sizewy*0.25].*s+q, 'callback', ' ' );
228
+ if isempty( EEG.stats.compenta ), set(hh, 'enable', 'off'); end;
229
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'See projection', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
230
+ 'Position',[50 -10 15 sizewy*0.25].*s+q, 'callback', ' ', 'enable', 'off' );
231
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'Help', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
232
+ 'Position',[70 -10 15 sizewy*0.25].*s+q, 'callback', 'pophelp(''pop_selectcomps'');' );
233
+ command = '[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET); eegh(''[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET);''); close(gcf)';
234
+ % str1='R';
235
+ % str2='rej';
236
+ % command='rej=EEG.reject;[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET);rej=EEG.reject;save(str1,str2);close(gcf)';
237
+ hh = uicontrol(gcf, 'Style', 'pushbutton', 'string', 'OK', 'Units','Normalized', 'backgroundcolor', GUIBUTTONCOLOR, ...
238
+ 'Position',[90 -10 15 sizewy*0.25].*s+q, 'callback', command);
239
+ % sprintf(['eeg_global; if %d pop_rejepoch(%d, %d, find(EEG.reject.sigreject > 0), EEG.reject.elecreject, 0, 1);' ...
240
+ % ' end; pop_compproj(%d,%d,1); close(gcf); eeg_retrieve(%d); eeg_updatemenu; '], rejtrials, set_in, set_out, fastif(rejtrials, set_out, set_in), set_out, set_in));
241
+ end;
242
+
243
+ com = [ 'pop_selectcomps(' inputname(1) ', ' vararg2str(compnum) ');' ];
244
+ return;
scripts/ADJUST1.1.1/trim_and_max.m ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % trim_and_max() - Computes maximum value from vector 'vettore'
3
+ % after removing the top 1% of the values
4
+ % (to be outlier resistant)
5
+ %
6
+ % Usage:
7
+ % >> valore=trim_and_max(vettore);
8
+ %
9
+ % Inputs:
10
+ % vettore - row vector
11
+ %
12
+ % Outputs:
13
+ % valore - result
14
+ %
15
+ %
16
+ % Author: Andrea Mognon, Center for Mind/Brain Sciences, University of
17
+ % Trento, 2009
18
+
19
+ % Motivation taken from the following comment to our paper:
20
+ % "On page 11 the authors motivate the use of the max5 function when computing
21
+ % Maximum Epoch Variance because the simple maximum would be too sensitive
22
+ % to spurious outliers. This is a good concern, however the max5 function would
23
+ % still be sensitive to spurious outliers for very large data sets. In other words, if
24
+ % the data set is large enough, one will be very likely to record more than five
25
+ % outliers. The authors should use a trimmed max function that computes the
26
+ % simple maximum after the top say .1% of the values have been removed from
27
+ % consideration. This rejection criteria scales appropriately with the size of the data
28
+ % set."
29
+
30
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
31
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
32
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
33
+ %
34
+ % This program is free software; you can redistribute it and/or modify
35
+ % it under the terms of the GNU General Public License as published by
36
+ % the Free Software Foundation; either version 2 of the License, or
37
+ % (at your option) any later version.
38
+ %
39
+ % This program is distributed in the hope that it will be useful,
40
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
41
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
42
+ % GNU General Public License for more details.
43
+ %
44
+ % You should have received a copy of the GNU General Public License
45
+ % along with this program; if not, write to the Free Software
46
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
47
+
48
+
49
+ function valore=trim_and_max(vettore)
50
+
51
+
52
+ dim=floor(.01*size(vettore,2)); % = 1% of vector length
53
+
54
+ tmp=sort(vettore);
55
+ valore= tmp(length(vettore)-dim);
56
+
57
+
scripts/ADJUST1.1.1/trim_and_mean.m ADDED
@@ -0,0 +1,42 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ % trim_and_mean() - Computes average value from vector 'vettore'
3
+ % after removing the top .1% of the values
4
+ % (to be outlier resistant)
5
+ %
6
+ % Usage:
7
+ % >> valore=trim_and_mean(vettore);
8
+ %
9
+ % Inputs:
10
+ % vettore - row vector
11
+ %
12
+ % Outputs:
13
+ % valore - result
14
+ %
15
+ % Copyright (C) 2009-2014 Andrea Mognon (1) and Marco Buiatti (2),
16
+ % (1) Center for Mind/Brain Sciences, University of Trento, Italy
17
+ % (2) INSERM U992 - Cognitive Neuroimaging Unit, Gif sur Yvette, France
18
+ %
19
+ % This program is free software; you can redistribute it and/or modify
20
+ % it under the terms of the GNU General Public License as published by
21
+ % the Free Software Foundation; either version 2 of the License, or
22
+ % (at your option) any later version.
23
+ %
24
+ % This program is distributed in the hope that it will be useful,
25
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
26
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
27
+ % GNU General Public License for more details.
28
+ %
29
+ % You should have received a copy of the GNU General Public License
30
+ % along with this program; if not, write to the Free Software
31
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
32
+
33
+
34
+ function valore=trim_and_mean(vettore)
35
+
36
+
37
+ dim=floor(.01*size(vettore,2)); % = 1% of vector length
38
+
39
+ tmp=sort(vettore);
40
+ valore= mean (tmp(1:(length(vettore)-dim)));
41
+
42
+
scripts/APPLE_ActiveCap_v2.m ADDED
@@ -0,0 +1,253 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ function [EEG,bad_chans,bad_epochs,bad_ICAs]=APPLE_ActiveCap_v2(EEG,eeg_chans,ref_chan,Do_ICA,subno,VEOG,session,TASK)
2
+ % #################
3
+ % make sure about VEOG cahnnel...correct in line 40 hasVEOG=0; or hasVEOG=1;
4
+ % Algorithmic Pre-Processing Line for EEG
5
+ % Intellectual Property of James F Cavanagh jcavanagh@unm.edu 2013
6
+ % Developed using eeglab12_0_2_1b [here we're using 14_0_0b] and in the plugins folder include the following:
7
+ % FASTER 1.2.3: http://sourceforge.net/projects/faster/
8
+ % ADJUST: http://www.unicog.org/pm/pmwiki.php/MEG/RemovingArtifactsWithADJUST
9
+
10
+ % ===================
11
+ % MANDATORY INPUT
12
+ % ===================
13
+ % EEG - The eponymous EEGLab array
14
+ % eeg_chans - vector of EEG channels (exclude VEOG, HEOG, anything else here)
15
+ % ref_chan - Call_APPLE should have re-ref'd the data to Fz or FCz
16
+ % Do_ICA - Do ICAs or not?
17
+ %
18
+ % ====================
19
+ % OPTIONAL PARAMETERS
20
+ % ====================
21
+ % subno - Subject ID for saving the output jpeg. Optional - will be set to 0 if empty
22
+ % VEOG - The vector of VEOG stripped from the EEG.data structure for use in ID'ing ICA blinks.
23
+ % session - For labeling output images
24
+ % TASK - For labeling output images
25
+ %
26
+ % ==============
27
+ % OUTPUT
28
+ % ==============
29
+ % EEG - interpolated with bad epochs rejected.
30
+ % bad_chans
31
+ % bad_epochs
32
+ % bad_ICAs
33
+
34
+ % Start clock
35
+ tic
36
+
37
+ % Get dimensions of EEG data matrix
38
+ dims=size(EEG.data);
39
+
40
+ hasVEOG = 0; %%%%%%%%%%%%%%%%% hasVEOG = 1; if there is VEOG channel, else 0
41
+ SubjID = subno; %subno;
42
+
43
+ % Get Vertex Site
44
+ for ai=1:dims(1), Z(ai)=EEG.chanlocs(ai).Z; end
45
+ Vertex=find(Z==max(Z)); clear Z;
46
+ % Get ERP % Topo of these data prior to fixen's
47
+ TEMPPRE = pop_reref( EEG, []);
48
+ PreFixERP=eegfilt(squeeze(mean(TEMPPRE.data(Vertex,:,:),3)),TEMPPRE.srate,[],20);
49
+ PreFixERP=PreFixERP-repmat(mean(PreFixERP),1,length(PreFixERP));
50
+ % Get times irrespective of sample rate
51
+ T1=find( abs(TEMPPRE.times-300) == min(abs(TEMPPRE.times-300)) ) ;
52
+ T2=find( abs(TEMPPRE.times-400) == min(abs(TEMPPRE.times-400)) ) ;
53
+ PreFixTopo=squeeze(mean(mean(TEMPPRE.data(:,T1:T2,:),2),3)); % Topo w/ blinks
54
+ clear TEMPPRE;
55
+
56
+ %% ID bad channels
57
+
58
+ % EEGLab Function
59
+ tempeeg=EEG; % save the real data as an archive
60
+ [EEG, indelec, measure] = pop_rejchan( EEG, 'elec', eeg_chans); % process on the 'EEG' set
61
+ clear EEG; EEG=tempeeg; clear tempeeg; % save what was done to the 'EEG' set, then erase it and replace with archive
62
+
63
+ % FASTER
64
+ chan = channel_properties(EEG, eeg_chans, ref_chan);
65
+ chan_exceeded_threshold = min_z_JFC(chan); % Cols are: 1) weighted correlation, weighted variance, Hurst
66
+ FASTER_bad_chans = find(logical(chan_exceeded_threshold(:,2)+chan_exceeded_threshold(:,3)));
67
+
68
+ % Combine unique elements
69
+ TOTAL_bad_chans=unique([FASTER_bad_chans(:);indelec(:)]);
70
+
71
+ % INTERPOLATE
72
+ if ~isempty(TOTAL_bad_chans)
73
+ EEG.data=double(EEG.data);
74
+ EEG = pop_interp(EEG,TOTAL_bad_chans,'spherical');
75
+ end
76
+
77
+ bad_chans{1}=FASTER_bad_chans;
78
+ bad_chans{2}=indelec;
79
+ bad_chans{3}=TOTAL_bad_chans;
80
+
81
+ %% NOW re-ref to average - after interpolation and before rejection (pop_autorej requires it)
82
+ EEG = pop_reref( EEG, []);
83
+
84
+ %% ID bad epochs
85
+
86
+ % EEGLab Function
87
+ tempeeg=EEG; % same as above - this takes a while though
88
+ [EEG, rmepochs] = pop_autorej(EEG,'nogui','on');
89
+ % - here
90
+ clear EEG; EEG=tempeeg; clear tempeeg;
91
+ autorej_bad_epochs=zeros(EEG.trials,1); % vb Vectorize the output
92
+ autorej_bad_epochs(sort(rmepochs))=1;
93
+
94
+ % FASTER
95
+ epoch = epoch_properties(EEG,eeg_chans);
96
+ epoch_exceeded_threshold = min_z_JFC(epoch); % Cols are: 1) mean epoch deviation, 2) epoch variance, 3) max amplitude
97
+ FASTER_bad_epochs = logical(epoch_exceeded_threshold(:,1)+epoch_exceeded_threshold(:,2)+epoch_exceeded_threshold(:,3)); % ANYTHING marked as bad is bad
98
+
99
+ % Combine unique elements
100
+ TOTAL_bad_epochs=logical(FASTER_bad_epochs+autorej_bad_epochs);
101
+
102
+ % REJECT
103
+ binarized=zeros(1,EEG.trials);
104
+ binarized(FASTER_bad_epochs)=1; % Only the FASTER ones
105
+ EEG = pop_rejepoch(EEG,binarized,0);
106
+ goodepochs=logical(1-binarized);
107
+
108
+ EP2REJ=1;
109
+ bad_epochs{1}=FASTER_bad_epochs;
110
+ bad_epochs{2}=autorej_bad_epochs;
111
+ bad_epochs{3}=TOTAL_bad_epochs;
112
+
113
+ %% Deal with blinks
114
+
115
+ if Do_ICA==1
116
+
117
+ % Calculate kC^2 = # of data points needed
118
+ k=25; % Suggested by Onton et al. 2005
119
+ C=dims(1)-length(TOTAL_bad_chans); % n good independent channels
120
+ sizeneeded=C^2*k;
121
+ epochsneeded=round(sizeneeded/EEG.srate); % # of epochs needed for a stable ICA solution
122
+
123
+ % ##### ##### ICA ##### #####
124
+ EEG = pop_runica(EEG,'icatype','runica'); % ,'chanind',eeg_chans(Chans4ICA)
125
+
126
+ % % % ADJUST ----------------------------- sometimes this crashes, and I don't find it useful, so I'm omitting it today
127
+ EEG.icaact = eeg_getica(EEG);
128
+ % % [art, horiz, vert, blink, disc, soglia_DV, diff_var, soglia_K,...
129
+ % % meanK, soglia_SED, SED, soglia_SAD, SAD, soglia_GDSF, GDSF, soglia_V, nuovaV]=ADJUST(EEG,'junkfile');
130
+ % % bad_ADJUST_ICAs=blink;
131
+ bad_ADJUST_ICAs=99999;
132
+
133
+ % Do VEOG correlation
134
+ if hasVEOG==1
135
+ for ai=1:size(EEG.icaact,1)
136
+ temp=squeeze(EEG.icaact(ai,:,:));
137
+ r=corrcoef(temp,VEOG(:,goodepochs));
138
+ VEOG_ICA_Corrs(ai)=abs(r(1,2)); clear temp;
139
+ end
140
+ bad_VEOG_ICAs=find(abs(zscore(VEOG_ICA_Corrs))>3);
141
+ if isempty(bad_VEOG_ICAs), bad_VEOG_ICAs=find(VEOG_ICA_Corrs==max(abs(VEOG_ICA_Corrs))); end % in case z-scores are too tightly distributed
142
+ else
143
+ bad_VEOG_ICAs=0;
144
+ end
145
+
146
+ % Bootstrap a blink template based on Gaussian distros around most frontopolar channels
147
+ % Get the most FrontoPolar Sites
148
+ for ai=1:dims(1), X(ai)=EEG.chanlocs(ai).X; end
149
+ FrontoPolars=find(X==max(X)); clear X;
150
+ % Make Gaussian Template - code taken from Mike X Cohen
151
+ for fpi=1:length(FrontoPolars)
152
+ e2use=FrontoPolars(fpi);
153
+ eucdist=zeros(1,size(EEG.icawinv,1)); topocorr=zeros(1,size(EEG.icawinv,1));
154
+ for chani=1:size(EEG.icawinv,1)
155
+ eucdist(chani)=sqrt( (EEG.chanlocs(chani).X-EEG.chanlocs(e2use).X)^2 + (EEG.chanlocs(chani).Y-EEG.chanlocs(e2use).Y)^2 + (EEG.chanlocs(chani).Z-EEG.chanlocs(e2use).Z)^2 );
156
+ end
157
+ s=30; template(fpi,:) = exp(- (eucdist.^2)/(2*s^2) );
158
+ end
159
+ template=mean(template,1);
160
+ % Get each ICA topo correlation with this topo template
161
+ for chani=1:size(EEG.icawinv,2)
162
+ topocorr(chani) = corr(EEG.icawinv(:,chani),template');
163
+ end
164
+ % Select the max correlations
165
+ bad_TEMPLATE_ICAs=find(abs(zscore(topocorr))>3);
166
+ if isempty(bad_TEMPLATE_ICAs), bad_TEMPLATE_ICAs=find(abs(topocorr)==max(abs(topocorr))); end % in case z-scores are too tightly distributed
167
+
168
+ % Aggregate all this
169
+ bad_ICAs{1}=bad_ADJUST_ICAs;
170
+ bad_ICAs{2}=bad_VEOG_ICAs;
171
+ bad_ICAs{3}=bad_TEMPLATE_ICAs;
172
+ bad_ICAs{4}=[sum(goodepochs),epochsneeded];
173
+
174
+ end
175
+
176
+ %% Show Stats
177
+
178
+ elapsed=toc;
179
+ pBAD_CHANS=(length(bad_chans{3})./dims(1))*100;
180
+ pBAD_EPOCHS=(sum(bad_epochs{3})./dims(3))*100;
181
+
182
+ % Show ERP and Topo after rejecting blink ICA, but don't actually remove that from the real EEG data
183
+ tempeeg=EEG; % archive real set
184
+ EEG = pop_subcomp( EEG, bad_TEMPLATE_ICAs, 0); % remove TEMPLATE ICAs
185
+ PostFixERP=eegfilt(squeeze(mean(EEG.data(Vertex,:,:),3)),EEG.srate,[],20); % Get ERP
186
+ PostFixERP=PostFixERP-repmat(mean(PostFixERP),1,length(PostFixERP)); % Ersatz Baseline
187
+ PostFixTopo=squeeze(mean(mean(EEG.data(:,T1:T2,:),2),3)); % Topo w/o blinks
188
+ clear EEG; EEG=tempeeg; clear tempeeg; % recover archive set for output
189
+
190
+ figure;
191
+ subplot(2,3,1)
192
+ pie([dims(1)-length(bad_chans{3}),length(bad_chans{3})],[0 1],{['Good=',num2str(dims(1)-length(bad_chans{3}))],['Bad=',num2str(length(bad_chans{3}))]})
193
+ title(['Subj: ',num2str(SubjID), ' Bad Chans']);
194
+ subplot(2,3,2)
195
+ pie([dims(3)-sum(bad_epochs{EP2REJ}),sum(bad_epochs{EP2REJ})],[0 1],{['Good=',num2str(dims(3)-sum(bad_epochs{EP2REJ}))],['Bad=',num2str(sum(bad_epochs{EP2REJ}))]})
196
+ title(['Subj: ',num2str(SubjID), ' Bad Epochs']);
197
+ subplot(2,3,3)
198
+ if Do_ICA==1
199
+ text(.2, .90, ['Bad ADJUST ICAs: ',num2str(bad_ICAs{1})]);
200
+ text(.2, .75, ['Bad VEOGcorr ICAs: ',num2str(bad_ICAs{2})]);
201
+ text(.2, .60, ['Bad TEMPLATE ICAs: ',num2str(bad_ICAs{3})]);
202
+ text(.2, .45, ['Epochs Needed for ICA: ',num2str(bad_ICAs{4}(2))]);
203
+ text(.2, .30, ['Epochs in Dataset (good): ',num2str(bad_ICAs{4}(1))]);
204
+ text(.2, .15, ['Mins Elapsed: ',num2str(elapsed/60)]);
205
+ else
206
+ text(.2, .50, bad_ICAs);
207
+ text(.2, .05, ['Mins Elapsed: ',num2str(elapsed/60)]);
208
+ end
209
+ set(gca,'visible','off');
210
+ %
211
+ subplot(2,3,4)
212
+ hold on
213
+ topoplot(PreFixTopo,EEG.chanlocs);
214
+ title('Topo Before Fixes (300-400 ms)');
215
+ subplot(2,3,5)
216
+ hold on
217
+ topoplot(PostFixTopo,EEG.chanlocs);
218
+ title('Topo After Fixes (300-400 ms)');
219
+ subplot(2,3,6)
220
+ hold on
221
+ plot(EEG.times,PreFixERP,'r');
222
+ plot(EEG.times,PostFixERP,'b--');
223
+ legend({'Pre-Fixes','Post-Fixes'},'Location','SouthOutside');
224
+ title('ERP at Vertex (20 Hz Filter)');
225
+ % Save that shiznit
226
+ % filename = EEG.comments(end-9:end-4); %%%% Added by Arun
227
+ saveas(gcf, [TASK,num2str(SubjID),'_APPLE.png'],'png');
228
+ close all;
229
+
230
+ % Save a map of the original ICAs
231
+ pop_selectcomps(EEG, [1:30] );
232
+ saveas(gcf, [TASK,num2str(SubjID),'_APPLE_ICAs.png'],'png');
233
+ % saveas(gcf, ['_PD',num2str(SubjID),'_',TASK,'_APPLE_ICAs.png'],'png');
234
+
235
+ close all;
236
+
237
+
238
+ function [lengths] = min_z_JFC(list_properties,rejection_options)
239
+ if (~exist('rejection_options','var'))
240
+ rejection_options.measure=ones(1,size(list_properties,2));
241
+ rejection_options.z=3*ones(1,size(list_properties,2));
242
+ end
243
+
244
+ rejection_options.measure=logical(rejection_options.measure);
245
+ zs=list_properties-repmat(mean(list_properties,1),size(list_properties,1),1);
246
+ zs=zs./repmat(std(zs,[],1),size(list_properties,1),1);
247
+ zs(isnan(zs))=0;
248
+ %all_l = abs(zs) > repmat(rejection_options.z,size(list_properties,1),1);
249
+ %lengths = any(all_l(:,rejection_options.measure),2);
250
+
251
+ lengths = abs(zs) > repmat(rejection_options.z,size(list_properties,1),1);
252
+
253
+
scripts/FASTER/FASTER.m ADDED
@@ -0,0 +1,581 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ function FASTER(option_wrapper)
2
+
3
+ % Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity College Dublin,
4
+ % Ireland
5
+ % nolanhu@tcd.ie, robert.whelan@tcd.ie
6
+ %
7
+ % This program is free software; you can redistribute it and/or modify
8
+ % it under the terms of the GNU General Public License as published by
9
+ % the Free Software Foundation; either version 2 of the License, or
10
+ % (at your option) any later version.
11
+ %
12
+ % This program is distributed in the hope that it will be useful,
13
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
14
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15
+ % GNU General Public License for more details.
16
+ %
17
+ % You should have received a copy of the GNU General Public License
18
+ % along with this program; if not, write to the Free Software
19
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
20
+
21
+ startDir=option_wrapper.options.file_options.folder_name;
22
+ outDir=option_wrapper.options.file_options.output_folder_name;
23
+ chan_locs=option_wrapper.options.file_options.channel_locations;
24
+ is_bdf=option_wrapper.options.file_options.is_bdf==1;
25
+ using_ALLEEG=option_wrapper.options.file_options.using_ALLEEG;
26
+ resume=option_wrapper.options.file_options.resume;
27
+
28
+ if ~using_ALLEEG
29
+ %[jpathname jf1 jf2 jf3]=fileparts(option_wrapper.options.job_filename);
30
+ [jpathname jf1 jf2]=fileparts(option_wrapper.options.job_filename);
31
+ Qname=[jf1 jf2 '_ProcQ.eegQ'];
32
+ else
33
+ Qname='ProcQ.eegQ';
34
+ end
35
+
36
+ is_processing=exist([startDir filesep Qname],'file');
37
+
38
+ if ((~ischar(chan_locs) || ~exist(chan_locs,'file')) && is_bdf) && ~is_processing
39
+ fprintf('Invalid channel location file.\n');
40
+ return;
41
+ end
42
+
43
+ if (~using_ALLEEG)
44
+ can_distribute=1;
45
+ if ~is_processing
46
+ if (resume)
47
+ if ~isempty(option_wrapper.options.file_options.plist)
48
+ plist=option_wrapper.options.file_options.plist;
49
+ nlist=option_wrapper.options.file_options.nlist;
50
+ oplist=option_wrapper.options.file_options.oplist;
51
+ else
52
+ if (is_bdf)
53
+ [plist nlist] = extsearchc(startDir,'.bdf',0);
54
+ else
55
+ % Assume .set if not .bdf
56
+ % Later versions may support other file formats
57
+ [plist nlist] = extsearchc(startDir,'.set',0);
58
+ end
59
+ oplist=cell(size(plist));
60
+
61
+ x=true(size(plist));
62
+ for i=1:length(plist)
63
+ if length(plist{i})>12
64
+ if strcmp(plist{i}(end-11:end),'Intermediate')
65
+ x(i)=0;
66
+ end
67
+ end
68
+ if isempty(outDir)
69
+ oplist{i}=plist{i};
70
+ else
71
+ oplist{i}=outDir;
72
+ dir_structure=get_dir_structure(plist{i},startDir);
73
+ for k=1:length(dir_structure)
74
+ oplist{i}=[filepath filesep dir_structure{k}];
75
+ if ~exist(oplist{i},'dir')
76
+ mkdir(oplist{i});
77
+ end
78
+ end
79
+ end
80
+ end
81
+ plist={plist{x}};
82
+ nlist={nlist{x}};
83
+ oplist={oplist{x}};
84
+
85
+ option_wrapper.options.file_options.plist=plist;
86
+ option_wrapper.options.file_options.nlist=nlist;
87
+ option_wrapper.options.file_options.oplist=oplist;
88
+ end
89
+ else
90
+ if (is_bdf)
91
+ [plist nlist] = extsearchc(startDir,'.bdf',0);
92
+ else
93
+ % Assume .set if not .bdf
94
+ % Later versions may support other file formats
95
+ [plist nlist] = extsearchc(startDir,'.set',0);
96
+ end
97
+ oplist=cell(size(plist));
98
+ x=true(size(plist));
99
+
100
+ filepath=option_wrapper.options.file_options.output_folder_name;
101
+
102
+ for i=1:length(plist)
103
+ if length(plist{i})>12
104
+ if strcmp(plist{i}(end-11:end),'Intermediate')
105
+ x(i)=0;
106
+ end
107
+ end
108
+ if isempty(outDir)
109
+ oplist{i}=plist{i};
110
+ else
111
+ oplist{i}=outDir;
112
+ dir_structure=get_dir_structure(plist{i},startDir);
113
+ for k=1:length(dir_structure)
114
+ oplist{i}=[filepath filesep dir_structure{k}];
115
+ if ~exist(oplist{i},'dir')
116
+ mkdir(oplist{i});
117
+ end
118
+ end
119
+ end
120
+ end
121
+ plist={plist{x}};
122
+ nlist={nlist{x}};
123
+ oplist={oplist{x}};
124
+ if (option_wrapper.options.file_options.make_subdirectories)
125
+ x = findrepeats(plist);
126
+ for i = 1:length(x)
127
+ if isempty(outDir)
128
+ try
129
+ mkdir(plist{x(i)},nlist{x(i)}(1:end-4));
130
+ movefile([plist{x(i)} filesep nlist{x(i)}],[plist{x(i)} filesep nlist{x(i)}(1:end-4)],'f');
131
+ if exist([plist{x(i)} filesep nlist{x(i)}(1:end-4) '.fdt'],'file') && ~is_bdf
132
+ movefile([plist{x(i)} filesep nlist{x(i)}(1:end-4) '.fdt'],[plist{x(i)} filesep nlist{x(i)}(1:end-4)],'f');
133
+ end
134
+ plist{x(i)} = [plist{x(i)} filesep nlist{x(i)}(1:end-4)];
135
+ oplist{x(i)} = plist{x(i)};
136
+ catch
137
+ error('Error in organising files in %s\n',plist{x(i)});
138
+ return;
139
+ end
140
+ else
141
+ try
142
+ if ~exist([outDir filesep nlist{x(i)}(1:end-4)],'dir')
143
+ mkdir(outDir,nlist{x(i)}(1:end-4));
144
+ end
145
+ oplist{x(i)} = [outDir filesep nlist{x(i)}(1:end-4)];
146
+ catch
147
+ error('Error in organising files in %s\n',plist{x(i)});
148
+ return;
149
+ end
150
+ end
151
+ end
152
+ end
153
+ option_wrapper.options.file_options.plist=plist;
154
+ option_wrapper.options.file_options.nlist=nlist;
155
+ option_wrapper.options.file_options.oplist=oplist;
156
+ end
157
+
158
+ % Changed the below from copyfile to direct write due to some weird
159
+ % permission issue that was probably only on one test computer.
160
+ % Works now anyway!
161
+ if ~isempty(chan_locs)
162
+ [clpathstr, clname, clext] = fileparts(chan_locs);
163
+ fid=0;
164
+ if ~isempty(outDir) && ~strcmp(outDir,clpathstr)
165
+ %copyfile(chan_locs,outDir,'f');
166
+ fid=fopen([outDir filesep clname clext],'w');
167
+ elseif ~strcmp(startDir,clpathstr)
168
+ %copyfile(chan_locs,startDir,'f');
169
+ fid=fopen([startDir filesep clname clext],'w');
170
+ end
171
+ if fid>0
172
+ fid2=fopen(chan_locs,'r');
173
+ while ~feof(fid2)
174
+ fprintf(fid,'%s',fgets(fid2));
175
+ end
176
+ fclose(fid);
177
+ fclose(fid2);
178
+ end
179
+ end
180
+
181
+ % Add stuff to save in the [startDir filesep 'ProcQ.eegQ'] file
182
+ Q.plist=plist;
183
+ Q.nlist=nlist;
184
+ Q.plist_rel=cell(0);
185
+ Q.oplist_rel=cell(0);
186
+ for v=1:length(plist)
187
+ Q.plist_rel{v}=find_relative_path(plist{v},startDir);
188
+ Q.oplist_rel{v}=find_relative_path(oplist{v},startDir);
189
+ end
190
+ Q.outDir_rel=cell(0);
191
+ if ~isempty(outDir)
192
+ Q.outDir_rel=find_relative_path(outDir,startDir);
193
+ end
194
+ my_comp_num=1;
195
+ Q.comp_nums=1;
196
+ Q.finished=0;
197
+ Q.processed=zeros(size(Q.plist));
198
+ Q.errors=zeros(size(Q.plist));
199
+ if resume
200
+ Q.next_file=option_wrapper.options.file_options.current_file_num;
201
+ else
202
+ Q.next_file=1;
203
+ end
204
+ save([startDir filesep Qname],'Q');
205
+ else
206
+ my_queue_file=[];
207
+ wait_and_lock();
208
+ L=load([startDir filesep Qname],'-mat');
209
+ Q=L.Q;
210
+ clear L;
211
+ % Recreate the path list from the relative path list, which are
212
+ plist=cell(size(Q.plist_rel));
213
+ oplist=plist;
214
+ for v=1:length(Q.plist_rel)
215
+ plist{v} = make_relative_path(Q.plist_rel{v},startDir);
216
+ oplist{v} = make_relative_path(Q.oplist_rel{v},startDir);
217
+ end
218
+ %plist=Q.plist;
219
+ nlist=Q.nlist;
220
+ if ~isempty(Q.outDir_rel)
221
+ outDir = make_relative_path(Q.outDir_rel,startDir);
222
+ end
223
+ %fprintf('\n\nOutput directory is: %s\n\n',outDir);
224
+ my_comp_num=max(Q.comp_nums)+1;
225
+ Q.comp_nums=[Q.comp_nums my_comp_num];
226
+ save_and_unlock();
227
+ [clpathstr, clname, clext] = fileparts(chan_locs);
228
+ if ~isempty(outDir)
229
+ option_wrapper.options.file_options.channel_locations=[outDir filesep clname clext];
230
+ else
231
+ option_wrapper.options.file_options.channel_locations=[startDir filesep clname clext];
232
+ end
233
+ end
234
+ else
235
+ can_distribute=0;
236
+ if is_processing==1
237
+ error('Can''t join a running jobfile if opened from EEGLAB. If this file is not being processed, reload it and reset the queue.');
238
+
239
+ % The below won't run, I may reinstate it at some point, but it's
240
+ % difficult to co-ordinate and may be pointless
241
+ c=clock;
242
+ months={'Jan' 'Feb' 'Mar' 'Apr' 'May' 'Jun' 'Jul' 'Aug' 'Sep' 'Oct' 'Nov' 'Dec'};
243
+ new_jobname=[sprintf('%d/%s/%d__%d-%d-%d___',c(3),months{c(2)},c(1),c(4),c(5),round(c(6))) option_wrapper.options.job_filename];
244
+ warning(sprintf('This jobfile is running on another machine.\nA new jobfile will be created: %s',new_jobname)); %#ok<WNTAG,SPWRN>
245
+ option_wrapper.option.job_filename=new_jobname;
246
+ return;
247
+ end
248
+ startDir=cd;
249
+ plist=zeros(evalin('base','size(ALLEEG);'));
250
+ %nlist=plist;
251
+ for v=1:length(plist)
252
+ plist(v)=evalin('base',sprintf('isempty(ALLEEG(%d).data);',v));
253
+ end
254
+ ALLEEG_to_do=find(plist~=1);
255
+ plist=cell(length(ALLEEG_to_do));
256
+ for v=1:length(plist)
257
+ plist{v}=ALLEEG_to_do(v);
258
+ oplist=cell(size(plist));
259
+ if ~isempty(outDir)
260
+ oplist{v}=outDir;
261
+ else
262
+ oplist{v}=evalin('base',sprintf('(ALLEEG(%d).filepath);',plist{v}));
263
+ if isempty(oplist{v})
264
+ oplist{v}=cd;
265
+ end
266
+ end
267
+ end
268
+ nlist=plist;
269
+ Q.plist=plist;
270
+ Q.nlist=nlist;
271
+ Q.plist_rel=plist;
272
+ my_comp_num=1;
273
+ Q.comp_nums=1;
274
+ Q.finished=0;
275
+ Q.processed=zeros(size(Q.plist));
276
+ Q.errors=zeros(size(Q.plist));
277
+ %Q.next_file=ALLEEG_to_do(1);
278
+ Q.next_file=1;
279
+ save([startDir filesep Qname],'Q');
280
+ option_wrapper.options.file_options.plist=plist;
281
+ option_wrapper.options.file_options.nlist=nlist;
282
+ option_wrapper.options.file_options.oplist=oplist;
283
+ end
284
+
285
+ if (~exist([startDir filesep 'Processing'],'dir'))
286
+ mkdir([startDir filesep 'Processing']);
287
+ end
288
+ if (~exist([startDir filesep 'Queue'],'dir'))
289
+ mkdir([startDir filesep 'Queue']);
290
+ end
291
+
292
+ all_errors=cell(0);
293
+
294
+ doing_distrib=0;
295
+ is_processing=1;
296
+ error_indices=zeros(size(plist));
297
+ first_file=1;
298
+ had_error=0;
299
+ my_proc_file=[];
300
+ make_processing_file();
301
+ EEG_state=[];
302
+ while (1)
303
+ %%%%%%%%%%%%%%%%%%%%%
304
+ % Before processing %
305
+ %%%%%%%%%%%%%%%%%%%%%
306
+
307
+ % The queue system is there to ensure that multiple computers are not
308
+ % reading the options file simultaneously and so trying to process the
309
+ % same file! Also to make sure all computers have finished processing
310
+ % before the grand average is made.
311
+
312
+ % Puts the current computer number in the queue
313
+ % and waits until other computers are done updating
314
+ % the queue file. Then opens the queue file, reads the
315
+ % current state to find the next file to process, then
316
+ % updates that for the next computer to read. If there
317
+ % is no next file, it marks the processing as finished.
318
+ my_queue_file=[];
319
+ wait_and_lock();
320
+ L=load([startDir filesep Qname],'-mat');
321
+ Q=L.Q;
322
+ if ~first_file
323
+ if ~had_error
324
+ Q.processed(current_file)=1;
325
+ else
326
+ Q.errors(current_file)=1;
327
+ if option_wrapper.debug && exist('m','var')
328
+ if isempty(outDir)
329
+ if exist([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'file')
330
+ L=load([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'-mat');
331
+ all_errors=L.all_errors;
332
+ end
333
+ all_errors{end+1,1}=m;
334
+ all_errors{end,2}=EEG_state;
335
+ save([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'all_errors','-mat');
336
+ error_indices(current_file)=size(all_errors,1);
337
+ else
338
+ if exist([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'file')
339
+ L=load([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'-mat');
340
+ all_errors=L.all_errors;
341
+ end
342
+ all_errors{end+1,1}=m;
343
+ all_errors{end,2}=EEG_state;
344
+ save([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'all_errors','-mat');
345
+ error_indices(current_file)=size(all_errors,1);
346
+ end
347
+ end
348
+ end
349
+ end
350
+ had_error=0;
351
+ %if (~using_ALLEEG && Q.next_file>length(Q.plist)) || (using_ALLEEG && Q.next_file>max(ALLEEG_to_do))
352
+ if Q.next_file>length(Q.plist)
353
+ Q.finished=1;
354
+ end
355
+ if Q.finished
356
+ Q.comp_nums=setdiff(Q.comp_nums,my_comp_num);
357
+ delete_processing_file();
358
+ save_and_unlock();
359
+ break;
360
+ end
361
+
362
+ current_file=Q.next_file;
363
+ Q.next_file=Q.next_file+1;
364
+
365
+ option_wrapper.options.file_options.current_file = [plist{current_file} filesep nlist{current_file}];
366
+ option_wrapper.options.file_options.current_file_num=current_file;
367
+ if (~isempty(option_wrapper.options.job_filename))
368
+ save(option_wrapper.options.job_filename,'option_wrapper','-mat');
369
+ end
370
+
371
+ save_and_unlock();
372
+
373
+ %%%%%%%%%%%%%%
374
+ % Processing %
375
+ %%%%%%%%%%%%%%
376
+ if (~isempty(option_wrapper.options.file_options.searchstring))
377
+ searchstring2=option_wrapper.options.file_options.searchstring;
378
+ else
379
+ searchstring2=nlist{current_file};
380
+ end
381
+ if ((using_ALLEEG && ~evalin('base',sprintf('isempty(ALLEEG(%d).data);',plist{current_file}))) || ~isempty(strfind(nlist{current_file},searchstring2)) )
382
+ tic
383
+ fprintf('******************\n');
384
+ fprintf('* File %.3d / %.3d *\n',current_file,length(nlist));
385
+ fprintf('******************\n');
386
+
387
+ if (~using_ALLEEG)
388
+ %log_file = fopen([plist{current_file} filesep option_wrapper.options.file_options.file_prefix nlist{current_file}(1:end-4) '.log'],'a+');
389
+ log_file = fopen([oplist{current_file} filesep option_wrapper.options.file_options.file_prefix nlist{current_file}(1:end-4) '.log'],'a+');
390
+ else
391
+ log_file = fopen([oplist{current_file} filesep option_wrapper.options.file_options.file_prefix sprintf('FASTER_ALLEEG(%d).log',ALLEEG_to_do(current_file))],'a+');
392
+ end
393
+
394
+ try
395
+ FASTER_process(option_wrapper,log_file);
396
+ catch
397
+ m=lasterror;
398
+ fprintf('\nError - %s.\n',m.message);
399
+ try fclose(log_file); catch; end;
400
+ had_error=1;
401
+ end
402
+ else
403
+ fprintf('Skipped file.\n');
404
+ end
405
+
406
+ % After processing
407
+ first_file=0;
408
+ end
409
+
410
+ %%%%%%%%%%%%%%%%%%%%%%
411
+ % Queueing Functions %
412
+ %%%%%%%%%%%%%%%%%%%%%%
413
+ function wait_and_lock()
414
+ % Find the last queue file, make one for this computer, then wait
415
+ % until the previous one is deleted
416
+ D=dir([startDir filesep 'Queue']);
417
+ N={D(:).name};
418
+ N=setdiff(N,{'.','..'});
419
+ N=str2double(N);
420
+ if isempty(N)
421
+ N=0;
422
+ end
423
+ next_queue_num=max(N)+1;
424
+ my_queue_file=[startDir filesep 'Queue' filesep sprintf('%d',next_queue_num)];
425
+ fid=fopen(my_queue_file,'w');
426
+ fclose(fid);
427
+ prev_queue_file=[startDir filesep 'Queue' filesep sprintf('%d',max(N))];
428
+ said=0;
429
+ while max(N)>0 && exist(prev_queue_file,'file')
430
+ if ~said
431
+ fprintf('Waiting for removal of Queue file %s\n',prev_queue_file);
432
+ said=1;
433
+ end
434
+ pause(1);
435
+ end
436
+ assignin('caller','my_queue_file',my_queue_file);
437
+ end
438
+ function save_and_unlock()
439
+ save([startDir filesep Qname],'Q');
440
+ pause(1);
441
+ delete(my_queue_file);
442
+ assignin('caller','my_queue_file',[]);
443
+ end
444
+ function make_processing_file()
445
+ my_proc_file=[startDir filesep 'Processing' filesep sprintf('%d',my_comp_num)];
446
+ fid=fopen(my_proc_file,'w');
447
+ fclose(fid);
448
+ assignin('caller','my_proc_file',my_proc_file);
449
+ end
450
+ function delete_processing_file()
451
+ delete(my_proc_file);
452
+ assignin('caller','my_proc_file',[]);
453
+ end
454
+
455
+ %%%%%%%%%%%%%%%%%%%
456
+ % Post processing %
457
+ %%%%%%%%%%%%%%%%%%%
458
+
459
+ if using_ALLEEG
460
+ evalin('base','EEG=ALLEEG(CURRENTSET);');
461
+ evalin('base','eeglab redraw;');
462
+ end
463
+
464
+ D=dir([startDir filesep 'Processing']);
465
+ if length(D)>2
466
+ fprintf('*******************\n');
467
+ fprintf('* FASTER Finished *\n');
468
+ fprintf('*******************\n');
469
+ fprintf('Finished processing all my files. The last computer to finish processing will make the grand average.\n');
470
+ return;
471
+ end
472
+
473
+ if isempty(outDir)
474
+ top_log = fopen([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER.log'],'a');
475
+ if exist([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'file')
476
+ L=load([startDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'-mat');
477
+ all_errors=L.all_errors;
478
+ end
479
+ else
480
+ top_log = fopen([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER.log'],'a');
481
+ if exist([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'file')
482
+ L=load([outDir filesep option_wrapper.options.file_options.file_prefix 'FASTER_errors.mat'],'-mat');
483
+ all_errors=L.all_errors;
484
+ end
485
+ end
486
+
487
+ c=clock;
488
+ months={'Jan' 'Feb' 'Mar' 'Apr' 'May' 'Jun' 'Jul' 'Aug' 'Sep' 'Oct' 'Nov' 'Dec'};
489
+ fprintf(top_log,'\n%d/%s/%d %d:%d:%d\n',c(3),months{c(2)},c(1),c(4),c(5),round(c(6)));
490
+
491
+ for v=1:length(plist)
492
+ if ~using_ALLEEG
493
+ fprintf(top_log,'%s%s%s:\n',plist{v},filesep,nlist{v});
494
+ else
495
+ fprintf(top_log,'ALLEEG(%d):\n',v);
496
+ if Q.processed(v)
497
+ fprintf(top_log,'Processed successfully.\n');
498
+ elseif Q.errors(v)
499
+ fprintf(top_log,'Error: %s. Load all_errors.mat and investigate all_errors{%d,1} for more info.\n',all_errors{error_indices(v),1}.message,error_indices(v));
500
+ else
501
+ fprintf(top_log,'Skipped due to filename filter or empty ALLEEG dataset.\n');
502
+ end
503
+ fprintf(top_log,'\n');
504
+ end
505
+ end
506
+
507
+ delete([startDir filesep Qname]);
508
+ if length(dir([startDir filesep 'Processing']))==2
509
+ rmdir([startDir filesep 'Processing']);
510
+ end
511
+ if length(dir([startDir filesep 'Queue']))==2
512
+ rmdir([startDir filesep 'Queue']);
513
+ end
514
+
515
+ %%%%%%%%%%%%%%%%%
516
+ % Grand Average %
517
+ %%%%%%%%%%%%%%%%%
518
+
519
+ FASTER_grandaverage(startDir,option_wrapper,all_errors,top_log,plist,nlist);
520
+
521
+ %%%%%%%%%%%%%
522
+ % All done! %
523
+ %%%%%%%%%%%%%
524
+
525
+ fprintf('*******************\n');
526
+ fprintf('* FASTER Finished *\n');
527
+ fprintf('* %.3d processed *\n',sum(Q.processed));
528
+ fprintf('* %.3d errors *\n',sum(Q.errors));
529
+ fprintf('* %.3d skipped *\n',length(plist)-sum(Q.processed)-sum(Q.errors));
530
+ fprintf('*******************\n');
531
+ fprintf(top_log,'\nFinished. %d processed, %d errors, %d skipped.\n',sum(Q.processed),sum(Q.errors),length(plist)-sum(Q.processed)-sum(Q.errors));
532
+ fclose(top_log);
533
+
534
+ function out_chan_locs = check_chan_locs(chan_locs,num_chans,num_exts)
535
+ fid = fopen(chan_locs,'r');
536
+ if fid==-1
537
+ out_chan_locs = -1;
538
+ return;
539
+ end
540
+ count=0;
541
+ x='';
542
+ while ~feof(fid)
543
+ x = fgetl(fid);
544
+ if ~isempty(x)
545
+ count = count+1;
546
+ end
547
+ end
548
+ if count < num_chans + num_exts
549
+ out_chan_locs = -1;
550
+ fclose(fid);
551
+ return;
552
+ end
553
+ if count == num_chans + num_exts
554
+ out_chan_locs = chan_locs;
555
+ fclose(fid);
556
+ return;
557
+ end
558
+ frewind(fid);
559
+ fid2 = fopen(['tempchanloc' chan_locs(end-4:end)],'w');
560
+ count2 = 0;
561
+ while ~feof(fid)
562
+ x = fgets(fid);
563
+ if (count2 < num_chans || count - count2 <= num_exts)
564
+ fprintf(fid2,'%s',x);
565
+ end
566
+ count2 = count2 + 1;
567
+ end
568
+ fclose(fid);
569
+ fclose(fid2);
570
+ out_chan_locs = ['tempchanloc' chan_locs(end-4:end)];
571
+ end
572
+
573
+ function indices = findrepeats(input)
574
+ indices=zeros(size(input));
575
+ for u=1:length(input)
576
+ indices(u)=sum(strcmp(input{u},input));
577
+ end
578
+ indices=find(indices>1);
579
+ end
580
+
581
+ end
scripts/FASTER/FASTER_GUI.m ADDED
@@ -0,0 +1,651 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % FASTER GUI v1.2.1b - see manual for help.
2
+
3
+ function varargout=FASTER_GUI(varargin)
4
+
5
+ % Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity
6
+ % College Dublin,
7
+ % Ireland
8
+ % nolanhu@tcd.ie, robert.whelan@tcd.ie
9
+ %
10
+ % This program is free software; you can redistribute it and/or modify
11
+ % it under the terms of the GNU General Public License as published by
12
+ % the Free Software Foundation; either version 2 of the License, or
13
+ % (at your option) any later version.
14
+ %
15
+ % This program is distributed in the hope that it will be useful,
16
+ % but WITHOUT ANY WARRANTY; without even the implied warranty of
17
+ % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18
+ % GNU General Public License for more details.
19
+ %
20
+ % You should have received a copy of the GNU General Public License
21
+ % along with this program; if not, write to the Free Software
22
+ % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
23
+
24
+ % Options file format:
25
+ % option_wrapper (top level struct)
26
+ % option_wrapper.job_name - filename where the options file is stored
27
+ % option_wrapper.
28
+ % option_wrapper.current_group - current group of options displayed
29
+ % (modified by clicking e.g. "Filter Options" button)
30
+ % option_wrapper.last_value - last option number in the option group
31
+ % clicked (used for double-click window open functionality)
32
+
33
+ FASTER_version='1.2.2b';
34
+
35
+ if nargout==1
36
+ from_EEGLAB=1;
37
+ else
38
+ from_EEGLAB=0;
39
+ end
40
+
41
+ set(0,'Units','pixels');
42
+ screensize = get(0,'ScreenSize');
43
+ screensize = screensize(1,[3 4]);
44
+ %The normal window works down to 800*600, it's pretty unlikely anyone with a smaller res
45
+ %display will be running this script anyway
46
+ figurepos = [(screensize(1)-720)/2 (screensize(2)-450)/2 720 450];
47
+ figurepos = round(figurepos);
48
+ bgcolor = [0.9 0.9 0.9];
49
+ if (from_EEGLAB)
50
+ %bgcolor = [1 0.1 0.3];
51
+ bgcolor=get(findobj('-regexp','Name','EEGLAB'),'Color');
52
+ end
53
+
54
+ %%%%%%%%%%%%%%%%%%%%%%%
55
+ %%%%% MAIN WINDOW %%%%%
56
+ %%%%%%%%%%%%%%%%%%%%%%%
57
+
58
+ fh = figure;
59
+ set(fh,'DockControls','off','Visible','on','Position',figurepos,'MenuBar','none','Toolbar','none','Color',bgcolor,'Resize','off','Name','FASTER EEG Processing v1.2.1b','NumberTitle','off','NextPlot','new');
60
+ set(fh,'Units','Normalized');
61
+ set(0,'Units','normalized');
62
+
63
+ all_options=struct;
64
+
65
+ mainpanel=uipanel('Parent',fh,'Units','Normalized','Position',[0 0 1 1],'BackgroundColor',bgcolor);
66
+ optpanel=uipanel('Parent',mainpanel);
67
+ option_box=uicontrol('Parent',optpanel,'Tag','option_box');
68
+ init_options();
69
+
70
+ bGO = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Run Job','FontSize',24,'FontWeight','bold','Units','Normalized','Position',[0.51 0.01 0.48 0.25],'Callback',{@FASTER_callbacks,'run_FASTER',option_box},'Interruptible','off','BusyAction','cancel');
71
+
72
+ lHeading = uicontrol('Parent',mainpanel,'Style','text','String','Setup', 'FontSize',24,'Units','Normalized','Position',[0.51 0.88 0.49 0.12],'BackgroundColor',bgcolor);
73
+
74
+ bFolder = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Job directory:', 'FontSize',14,'Units','Normalized','Position',[0.51 0.8275 0.18 0.07],'BackgroundColor',bgcolor);
75
+ tbFolder = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.8275 0.28 0.07],'UserData','file_options.folder_name');
76
+ bOFolder = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Output directory:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.75 0.18 0.07],'BackgroundColor',bgcolor);
77
+ tbOFolder = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.75 0.28 0.07],'UserData','file_options.output_folder_name');
78
+ bChanLocs = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Channel locations:', 'FontSize',11,'Units','Normalized','Position',[0.51 0.6725 0.18 0.07],'BackgroundColor',bgcolor);
79
+ tbChanLocs = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.6725 0.28 0.07],'UserData','file_options.channel_locations','FontSize',12);
80
+ set(tbFolder,'Callback',{@FASTER_callbacks,'update_value',option_box});
81
+ set(tbOFolder,'Callback',{@FASTER_callbacks,'update_value',option_box});
82
+ set(tbChanLocs,'Callback',{@FASTER_callbacks,'update_value',option_box});
83
+ set(bFolder,'Callback',{@FASTER_callbacks,'folderselect',tbFolder,'Select job folder',option_box});
84
+ set(bOFolder,'Callback',{@FASTER_callbacks,'folderselect',tbOFolder,'Select output folder',option_box});
85
+ set(bChanLocs,'Callback',{@FASTER_callbacks,'fileselect',tbChanLocs,'Select channel location file',option_box});
86
+ lFileType = uicontrol('Parent',mainpanel,'Style','text','String','File type:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.575 0.18 0.08],'BackgroundColor',bgcolor);
87
+ ddFileType = uicontrol('Parent',mainpanel,'Style','popupmenu','String',{'BDF file (Biosemi)','SET file (EEGLAB)'},'FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.585 0.28 0.08],'UserData','file_options.is_bdf','FontSize',12,'Callback',{@FASTER_callbacks,'update_value',option_box});
88
+ lSearchString = uicontrol('Parent',mainpanel,'Style','text','String','File filter:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.5275 0.18 0.06],'BackgroundColor',bgcolor);
89
+ tbSearchString = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.5375 0.28 0.06],'UserData','file_options.searchstring');
90
+ set(tbSearchString,'Callback',{@FASTER_callbacks,'update_value',option_box});
91
+ lPrefix = uicontrol('Parent',mainpanel,'Style','text','String','Output file prefix:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.46 0.18 0.06],'BackgroundColor',bgcolor);
92
+ tbPrefix = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',12,'HorizontalAlign','center','Units','Normalized','Position',[0.7 0.47 0.28 0.06],'UserData','file_options.file_prefix');
93
+ set(tbPrefix,'Callback',{@FASTER_callbacks,'update_value',option_box});
94
+ if (~from_EEGLAB)
95
+ lSubdirs = uicontrol('Parent',mainpanel,'Style','text','String','Individual folders:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.40 0.18 0.06],'BackgroundColor',bgcolor);
96
+ cbSubdirs = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.4075 0.15 0.06],'UserData','file_options.make_subdirectories','BackgroundColor',bgcolor);
97
+ set(cbSubdirs,'Callback',{@FASTER_callbacks,'update_value',option_box});
98
+ lResume = uicontrol('Parent',mainpanel,'Style','text','String','Resume:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.345 0.18 0.06],'BackgroundColor',bgcolor);
99
+ cbResume = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.3525 0.15 0.06],'UserData','file_options.resume','BackgroundColor',bgcolor);
100
+ set(cbResume,'Callback',{@FASTER_callbacks,'update_value',option_box});
101
+ lResume_num = uicontrol('Parent',mainpanel,'Style','text','String','','HorizontalAlign','right', 'FontSize',12,'Units','Normalized','Position',[0.93 0.345 0.05 0.06],'BackgroundColor',bgcolor,'UserData','file_options.current_file_num');
102
+ other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSubdirs cbResume lResume_num bFolder];
103
+ else
104
+ set([bFolder,tbFolder,lFileType,ddFileType],'Enable','off');
105
+ set(lSearchString,'String','Setname filter:');
106
+ lSaveEEG = uicontrol('Parent',mainpanel,'Style','text','String','Save datasets:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.40 0.18 0.06],'BackgroundColor',bgcolor);
107
+ cbSaveEEG = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.4075 0.15 0.06],'UserData','file_options.save_ALLEEG','BackgroundColor',bgcolor);
108
+ set(cbSaveEEG,'Callback',{@FASTER_callbacks,'update_value',option_box});
109
+ lOverwrite = uicontrol('Parent',mainpanel,'Style','text','String','Overwrite datasets:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.345 0.18 0.06],'BackgroundColor',bgcolor);
110
+ cbOverwrite = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.3525 0.15 0.06],'UserData','file_options.overwrite_ALLEEG','BackgroundColor',bgcolor);
111
+ % set(cbResume,'Callback',{@FASTER_callbacks,'update_value',option_box});
112
+ % other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSaveEEG cbResume bFolder];
113
+ other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSaveEEG bFolder];
114
+ end
115
+
116
+ bSave = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Save job','FontSize',14,'Units','Normalized','Position',[0.51 0.265 0.235 0.09],'Callback',{@FASTER_callbacks,'save_job',option_box});
117
+ bLoad = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Load job','FontSize',14,'Units','Normalized','Position',[0.755 0.265 0.235 0.09],'Callback',{@FASTER_callbacks,'open_job',option_box,std_options});
118
+
119
+ % Options panel
120
+
121
+ set(optpanel,'Parent',mainpanel,'Units','Normalized','Position',[0.01 0.01 0.49 0.98],'BackgroundColor',bgcolor);
122
+ uicontrol('Parent',optpanel,'FontSize',20,'Style','text','String','Options','Units','Normalized','Position',[0.3 0.9 0.4 0.1],'BackgroundColor',bgcolor);
123
+
124
+ y=0.03;
125
+ x=0.05;
126
+ h=0.35;
127
+ w=0.9;
128
+ set(option_box,'Parent',optpanel,'Style','listbox','String','','Units','Normalized','Position',[x y w h]);
129
+
130
+ uicontrol('Parent',optpanel,'FontSize',12,'Style','text','String','Function','Units','Normalized','Position',[0.1 0.82 0.5 0.05],'BackgroundColor',bgcolor);
131
+ uicontrol('Parent',optpanel,'FontSize',12,'Style','text','String','Save','Units','Normalized','Position',[0.72 0.82 0.12 0.05],'BackgroundColor',bgcolor);
132
+
133
+ % Set of options and corresponding window functions for each function group
134
+ list_filter={'High pass on','High pass frequency','High pass options','Low pass on','Low pass frequency','Low pass options','Notch on','Notch frequency','Notch options','Resample'};
135
+ list_channels={'Reference channel','EEG channels','External channels','Known bad channels','Interpolate after ICA','Channel rejection','Rejection options'};
136
+ list_epoch={'Markered epoching','Unmarkered epoching','Epoch limits','Baseline subtraction','Epoch rejection','Rejection options'};
137
+ list_ICA={'Run ICA','Channels for ICA','ICA k value','Keep existing ICA weights','Save component topographies as images','ICA component rejection','Rejection options'};
138
+ list_epoch_interp={'Epoch interpolation','Rejection options'};
139
+ list_GA={'Make grand average','Grand average markers','Grand average length','Trimmed mean','Subject removal','Rejection options'};
140
+
141
+ set(option_box,'String',list_filter); %Set to display the filter settings initially
142
+
143
+ x1=0.1;
144
+ x2=0.71;
145
+ x3=0.76;
146
+ y=0.75;
147
+ filter_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Filter','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_filter,1},'UserData',[0 1]);
148
+ filter_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',1,option_box});
149
+ y=y-0.07;
150
+ channels_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Channels','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_channels,2});
151
+ channels_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',2,option_box});
152
+ y=y-0.07;
153
+ epoch_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Epoching','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_epoch,3});
154
+ epoch_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',3,option_box});
155
+ y=y-0.07;
156
+ ICA_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','ICA','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_ICA,4});
157
+ ICA_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',4,option_box});
158
+ y=y-0.07;
159
+ epoch_interp_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Epoch Interpolation','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_epoch_interp,5});
160
+ epoch_interp_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',5,option_box});
161
+ y=y-0.07;
162
+ GA_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Grand Average','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_GA,6});
163
+
164
+ save_handles=[filter_save channels_save epoch_save ICA_save epoch_interp_save];
165
+ for s=1:5
166
+ set(save_handles(s),'Value',all_options.save_options(s));
167
+ end
168
+
169
+ settings_list={'Style','String','FontSize','UserData'};
170
+
171
+ windows_filter={
172
+
173
+ {
174
+ {'text','High pass on',14,0},{'checkbox','',14,'filter_options.hpf_on'},...
175
+ },
176
+
177
+ {
178
+ {'text','High pass frequency',14,0},{'edit','',14,'filter_options.hpf_freq'},...
179
+ },
180
+
181
+ {
182
+ {'text','HP ripple (dB)',12,0},{'edit','0.01',14,'filter_options.hpf_ripple'},{'text','HP attenuation (dB)',12,0},{'edit','80',14,'filter_options.hpf_attenuation'},{'text','HP transition band width (Hz)',10,0},{'edit','1',14,'filter_options.hpf_bandwidth'},...
183
+ },
184
+
185
+ {
186
+ {'text','Low pass on',14,0},{'checkbox','',14,'filter_options.lpf_on'},...
187
+ },
188
+
189
+ {
190
+ {'text','Low pass frequency',14,0},{'edit','',14,'filter_options.lpf_freq'},...
191
+ },
192
+
193
+ {
194
+ {'text','LP ripple (dB)',12,0},{'edit','0.01',14,'filter_options.lpf_ripple'},{'text','LP attenuation (dB)',12,0},{'edit','80',14,'filter_options.lpf_attenuation'},{'text','LP transition band width (Hz)',10,0},{'edit','1',14,'filter_options.lpf_bandwidth'},...
195
+ },
196
+
197
+ {
198
+ {'text','Notch on',14,0},{'checkbox','',14,'filter_options.notch_on'},...
199
+ },
200
+
201
+ {
202
+ {'text','Notch frequency',14,0},{'edit','',14,'filter_options.notch_freq'},...
203
+ },
204
+
205
+ {
206
+ {'text','Notch bandwidth (dB)',12,0},{'edit','0.01',14,'filter_options.notch_bandwidth1'},{'text','Notch ripple (dB)',12,0},{'edit','0.01',14,'filter_options.notch_ripple'},{'text','Notch attenuation (dB)',12,0},{'edit','80',14,'filter_options.notch_attenuation'},{'text','Notch transition band width (Hz)',10,0},{'edit','1',14,'filter_options.notch_bandwidth2'},...
207
+ },
208
+
209
+ {
210
+ {'text','Resample on',14,0},{'checkbox','',14,'filter_options.resample_on'},{'text','Resample frequency (Hz)',12,0},{'edit','512',14,'filter_options.resample_freq'},...
211
+ },
212
+
213
+ };
214
+
215
+ windows_channels={
216
+
217
+ {
218
+ {'text','Reference chan for processing',10,0},{'edit','',14,'channel_options.ref_chan'},{'text','Output reference channel',12,0},{'edit','',14,'channel_options.op_ref_chan'},...
219
+ }
220
+
221
+ {
222
+ {'text','EEG channels',14,0},{'edit','',14,'channel_options.eeg_chans'},...
223
+ }
224
+
225
+ {
226
+ {'text','External channels',14,0},{'edit','',14,'channel_options.ext_chans'},...
227
+ }
228
+
229
+ {
230
+ {'text','Known bad channels',14,0},{'edit','',14,'channel_options.bad_channels'},...
231
+ }
232
+
233
+ {
234
+ {'text','Interpolate after ICA',14,0},{'checkbox','',14,'channel_options.interp_after_ica'},...
235
+ }
236
+
237
+ {
238
+ {'text','Run channel rejection',14,0},{'checkbox','',14,'channel_options.channel_rejection_on'},...
239
+ }
240
+
241
+ {
242
+ {'text','Channel correlation',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(1)'},{'text','Channel variance',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(2)'},{'text','Hurst exponent',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(3)'},{'text','Exclude EOG channels',12,0},{'checkbox','',14,'channel_options.exclude_EOG_chans'},...
243
+ },
244
+
245
+ };
246
+
247
+ windows_epochs={
248
+
249
+ {
250
+ {'text','Markered epoching',12,0},{'checkbox','',14,'epoch_options.markered_epoch'},{'text','Markers for epoching',14,0},{'edit','',14,'epoch_options.epoch_markers'},...
251
+ },
252
+
253
+ {
254
+ {'text','Unmarkered epoching',12,0},{'checkbox','',14,'epoch_options.unmarkered_epoch'},{'text','Epoching interval',12,0},{'edit','',14,'epoch_options.unmarkered_epoch_interval'},...
255
+ },
256
+
257
+ {
258
+ {'text','Epoch limits',14,0},{'edit','',14,'epoch_options.epoch_limits'},...
259
+ },
260
+
261
+ {
262
+ {'text','Baseline subtraction',14,0},{'edit','',14,'epoch_options.baseline_sub'},...
263
+ },
264
+
265
+ {
266
+ {'text','Epoch rejection',14,0},{'checkbox','',14,'epoch_options.epoch_rejection_on'},...
267
+ },
268
+
269
+ {
270
+ {'text','Deviation from mean',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(3)'},...
271
+ },
272
+
273
+ };
274
+
275
+ windows_ICA={
276
+
277
+ {
278
+ {'text','Run ICA',14,0},{'checkbox','',14,'ica_options.run_ica'},...
279
+ }
280
+
281
+ {
282
+ {'text','ICA channels',14,0},{'edit',25,14,'ica_options.ica_channels'},...
283
+ }
284
+
285
+ {
286
+ {'text','ICA k value',14,0},{'edit',25,14,'ica_options.k_value'},...
287
+ }
288
+
289
+ {
290
+ {'text','Keep existing ICA weights',12,0},{'checkbox','',14,'ica_options.keep_ICA'},...
291
+ }
292
+
293
+ {
294
+ {'text','Save component topography images',10,0},{'checkbox','',14,'ica_options.IC_images'},...
295
+ }
296
+
297
+ {
298
+ {'text','Reject ICA components',12,0},{'checkbox','',14,'ica_options.component_rejection_on'},...
299
+ }
300
+
301
+ {
302
+ {'text','Median gradient',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(1)'},{'text','Spectral slope',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(2)'},{'text','Spatial kurtosis',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(3)'},{'text','Hurst exponent',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(4)'},{'text','EOG correlation',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(5)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(5)'},{'text','EOG channels',14,0},{'edit',129:132,12,'ica_options.EOG_channels'},{'text','Lowpass frequency',12,0},{'edit','',14,'ica_options.lopass_freq'},...
303
+ }
304
+
305
+ };
306
+
307
+ windows_epoch_interp={
308
+
309
+ {
310
+ {'text','Epoch interpolation',14,0},{'checkbox','',14,'epoch_interp_options.epoch_interpolation_on'},...
311
+ }
312
+
313
+ {
314
+ {'text','Median gradient',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(3)'},{'text','Deviation from mean',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(4)'},...
315
+ }
316
+
317
+ };
318
+
319
+ windows_GA={
320
+
321
+ {
322
+ {'text','Make grand average',14,0},{'checkbox','',14,'averaging_options.make_GA'},...
323
+ },
324
+
325
+ {
326
+ {'text','Grand average markers',12,0},{'edit','',14,'averaging_options.GA_markers'},...
327
+ },
328
+
329
+ {
330
+ {'text','Grand average length',12,0},{'edit','',14,'averaging_options.GA_epoch_length'},...
331
+ },
332
+
333
+ {
334
+ {'text','Use trimmed mean',12,0},{'checkbox','',14,'averaging_options.GA_trimmed_mean'},{'text','Percentage to trim',12,0},{'edit','',14,'averaging_options.GA_trimmed_mean_perc'},...
335
+ },
336
+
337
+ {
338
+ {'text','Subject removal on',12,0},{'checkbox','',14,'averaging_options.subject_removal_on'},...
339
+ },
340
+
341
+ {
342
+ {'text','Deviation from mean',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(3)'},{'text','Max EOG value',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(4)'},...
343
+ },
344
+
345
+ };
346
+
347
+ all_windows = {windows_filter, windows_channels, windows_epochs, windows_ICA, windows_epoch_interp, windows_GA};
348
+ if (from_EEGLAB)
349
+ all_options.file_options.using_ALLEEG=1;
350
+ end
351
+
352
+ option_wrapper=struct;
353
+ option_wrapper.options=all_options;
354
+ option_wrapper.current_group=1;
355
+ option_wrapper.last_value=1;
356
+ option_wrapper.window_handles=all_windows;
357
+ option_wrapper.save_handles=save_handles;
358
+ option_wrapper.other_handles=other_handles;
359
+ option_wrapper.version=FASTER_version;
360
+
361
+ option_wrapper.debug=1;
362
+
363
+ set(option_box,'Callback',{@FASTER_callbacks,'pop_up',@make_window},'UserData',option_wrapper);
364
+
365
+ set(fh,'CloseRequestFcn',{@FASTER_callbacks,'main_window_close',option_box});
366
+
367
+ hmenu = uimenu('Label','More Options');
368
+ uimenu(hmenu,'Label','Save as default options','Callback',{@FASTER_callbacks,'save_defaults',option_box});
369
+ uimenu(hmenu,'Label','Load default option','Callback',{@FASTER_callbacks,'get_defaults',option_box,from_EEGLAB});
370
+ uimenu(hmenu,'Label','Save as new job file','Callback',{@FASTER_callbacks,'save_new_job',option_box});
371
+
372
+ FASTER_callbacks([],[],'update_controls',option_box);
373
+
374
+ if nargout==1
375
+ varargout{1}=evalin('base','EEG;');
376
+ end
377
+
378
+ %%%%%%%%%%%%%%%%%%%%%%%%%%
379
+ %%%%% OPTIONS WINDOW %%%%%
380
+ %%%%%%%%%%%%%%%%%%%%%%%%%%
381
+
382
+ function nf=make_window(controls2,src)
383
+ controls1={'Style','String','FontSize','UserData'};
384
+ nf = figure;
385
+ N=length(controls2);
386
+ w=400;
387
+ h=40 * (N/2) + 40;
388
+ set(nf,'Units','Pixels','Position',[(screensize(1)-w)/2 (screensize(2)-h)/2 w h],'Color',bgcolor,'WindowStyle','modal');
389
+ hcontrols=zeros(size(controls2));
390
+ for u=1:N
391
+ hcontrols(u)=uicontrol('Parent',nf);
392
+ set(hcontrols(u),controls1,controls2{u});
393
+ %set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor);
394
+ x = (mod(u-1,2)*200);
395
+ y = (20*N)-40*(round(u/2))+40;
396
+ set(hcontrols(u),'Position',[x y 200 40]+get_offset(get(hcontrols(u),'Style')));
397
+ option_wrapper=get(src,'UserData');
398
+ subgroup=get(hcontrols(u),'UserData');
399
+ if ischar(subgroup)
400
+ if (strcmpi(get(hcontrols(u),'Style'),'edit'))
401
+ set(hcontrols(u),'Units','Pixels','BackgroundColor',[1 1 1]);
402
+ r=e('option_wrapper.options',subgroup);
403
+ if (~ischar(r) && ~iscell(r))
404
+ if (any(mod(r,1)))
405
+ s=sprintf('%.2f ', r);
406
+ if (~isempty(s) && s(end)==' ')
407
+ s=s(1:end-1);
408
+ end
409
+ set(hcontrols(u),'String',s);
410
+ else
411
+ if (~isempty(r) && all(diff(r)==1) && length(r)>1)
412
+ set(hcontrols(u),'String',sprintf('%d:%d', r(1),r(end)));
413
+ else
414
+ s=sprintf('%d ',r);
415
+ if (~isempty(s) && s(end)==' ')
416
+ s=s(1:end-1);
417
+ end
418
+ set(hcontrols(u),'String',s);
419
+ end
420
+ end
421
+ elseif iscell(r)
422
+ s='{';
423
+ for c=1:length(r)
424
+ if ischar(r{c})
425
+ s=[s '''' r{c} ''', '];
426
+ else
427
+ if (any(mod(r{c},1)))
428
+ s1=sprintf('%.2f ', r{c});
429
+ if (~isempty(s1) && s1(end)==' ')
430
+ s1=s1(1:end-1);
431
+ end
432
+ else
433
+ if (~isempty(r{c}) && all(diff(r{c})==1) && length(r{c})>1)
434
+ s1=sprintf('%d:%d', r{c}(1),r{c}(end));
435
+ else
436
+ s1=sprintf('%d ',r{c});
437
+ if (~isempty(s1) && s1(end)==' ')
438
+ s1=s1(1:end-1);
439
+ end
440
+ end
441
+ end
442
+
443
+ s=[s '[' s1 '], '];
444
+ end
445
+ end
446
+ if (~isempty(s) && s(end)==' ')
447
+ if (s(end-1)==',')
448
+ s=s(1:end-2);
449
+ else
450
+ s=s(1:end-1);
451
+ end
452
+ end
453
+ s=[s '}'];
454
+ set(hcontrols(u),'String',s);
455
+ else
456
+ set(hcontrols(u),'String',e('option_wrapper.options',subgroup));
457
+ end
458
+ else
459
+ set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor);
460
+ set(hcontrols(u),'Value',e('option_wrapper.options',subgroup));
461
+ end
462
+ else
463
+ set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor);
464
+ set(hcontrols(u),'Value',0);
465
+ end
466
+ set(hcontrols(u),'Callback',{@FASTER_callbacks,'set_window_value',src});
467
+ end
468
+
469
+ uicontrol('style','pushbutton','Units','Pixels','BackgroundColor',bgcolor,'Position',[175 10 50 20],'String','OK','Callback',{@FASTER_callbacks,'option_window_close',src,hcontrols,nf},'FontSize',12);
470
+ set(nf,'CloseRequestFcn',{@FASTER_callbacks,'do_nothing'});
471
+ end
472
+
473
+ function out=get_offset(uicontrol_type)
474
+ % Lines up text correctly
475
+ switch (uicontrol_type)
476
+ case 'text'
477
+ out=[0 -2 0 -8];
478
+ case 'checkbox'
479
+ out=[80 2 0 0];
480
+ case 'edit'
481
+ out=[0 4 -2 -4];
482
+ otherwise
483
+ out=[0 0 0 0];
484
+ end
485
+ out = out + [0 -5 0 0];
486
+ end
487
+
488
+ function out=e(part1,part2)
489
+ out=eval(sprintf('%s.%s',part1,part2));
490
+ end
491
+
492
+ function init_options()
493
+ % Provides the default options.
494
+ if (exist('FASTER_defaults.mat','file'))
495
+ def_options=FASTER_callbacks([],[],'get_defaults',option_box,from_EEGLAB);
496
+ end
497
+
498
+ all_options.job_filename='';
499
+ all_options.current_file=[];
500
+ all_options.current_file_num=1;
501
+ all_options.is_processing=0;
502
+
503
+ all_options.save_options=ones(1,5);
504
+
505
+ all_options.file_options.folder_name='';
506
+ all_options.file_options.output_folder_name='';
507
+ all_options.file_options.current_file='';
508
+ all_options.file_options.current_file_num=1;
509
+ all_options.file_options.channel_locations='';
510
+ all_options.file_options.searchstring='';
511
+ all_options.file_options.cutoff_markers=[];
512
+ all_options.file_options.is_bdf=1;
513
+ all_options.file_options.resume=0;
514
+ all_options.file_options.file_prefix='';
515
+ all_options.file_options.plist=cell(0);
516
+ all_options.file_options.oplist=cell(0);
517
+ all_options.file_options.nlist=cell(0);
518
+ all_options.file_options.using_ALLEEG=0;
519
+ all_options.file_options.make_subdirectories=1;
520
+ all_options.file_options.save_ALLEEG=1;
521
+ all_options.file_options.folder_name_rel=cell(0);
522
+ all_options.file_options.overwrite_ALLEEG=0;
523
+
524
+ all_options.filter_options.hpf_on=1;
525
+ all_options.filter_options.hpf_freq=1;
526
+ all_options.filter_options.hpf_ripple=0.05;
527
+ all_options.filter_options.hpf_attenuation=80;
528
+ all_options.filter_options.hpf_bandwidth=0.5;
529
+ all_options.filter_options.lpf_on=1;
530
+ all_options.filter_options.lpf_freq=95;
531
+ all_options.filter_options.lpf_ripple=0.01;
532
+ all_options.filter_options.lpf_attenuation=40;
533
+ all_options.filter_options.lpf_bandwidth=2.5;
534
+ all_options.filter_options.notch_on=1;
535
+ all_options.filter_options.notch_freq=50;
536
+ all_options.filter_options.notch_bandwidth1=3;
537
+ all_options.filter_options.notch_ripple=0.05;
538
+ all_options.filter_options.notch_attenuation=80;
539
+ all_options.filter_options.notch_bandwidth2=1;
540
+ all_options.filter_options.resample_on=0;
541
+ all_options.filter_options.resample_freq=0;
542
+
543
+ all_options.channel_options.do_reref=1;
544
+ all_options.channel_options.ref_chan=85;
545
+ all_options.channel_options.op_ref_chan=[];
546
+ all_options.channel_options.eeg_chans=1:128;
547
+ all_options.channel_options.ext_chans=129:136;
548
+ all_options.channel_options.bad_channels=[];
549
+ all_options.channel_options.interp_after_ica=1;
550
+ all_options.channel_options.channel_rejection_on=1;
551
+ all_options.channel_options.rejection_options=struct;
552
+ all_options.channel_options.rejection_options.measure(1)=1;
553
+ all_options.channel_options.rejection_options.z(1)=3;
554
+ all_options.channel_options.rejection_options.measure(2)=1;
555
+ all_options.channel_options.rejection_options.z(2)=3;
556
+ all_options.channel_options.rejection_options.measure(3)=1;
557
+ all_options.channel_options.rejection_options.z(3)=3;
558
+ all_options.channel_options.exclude_EOG_chans=1;
559
+
560
+ all_options.epoch_options.markered_epoch=1;
561
+ all_options.epoch_options.epoch_markers=[];
562
+ all_options.epoch_options.epoch_limits=[-0.2 0.8];
563
+ all_options.epoch_options.baseline_sub=[-0.1 0];
564
+ all_options.epoch_options.unmarkered_epoch=0;
565
+ all_options.epoch_options.unmarkered_epoch_interval=1;
566
+ all_options.epoch_options.epoch_rejection_on=1;
567
+ all_options.epoch_options.rejection_options=struct;
568
+ all_options.epoch_options.rejection_options.measure(1)=1;
569
+ all_options.epoch_options.rejection_options.z(1)=3;
570
+ all_options.epoch_options.rejection_options.measure(2)=1;
571
+ all_options.epoch_options.rejection_options.z(2)=3;
572
+ all_options.epoch_options.rejection_options.measure(3)=1;
573
+ all_options.epoch_options.rejection_options.z(3)=3;
574
+
575
+ all_options.ica_options.run_ica=1;
576
+ all_options.ica_options.k_value=25;
577
+ all_options.ica_options.ica_channels=1:136;
578
+ all_options.ica_options.keep_ICA=0;
579
+ all_options.ica_options.IC_images=0;
580
+ all_options.ica_options.component_rejection_on=1;
581
+ all_options.ica_options.rejection_options=struct;
582
+ all_options.ica_options.rejection_options.measure(1)=1;
583
+ all_options.ica_options.rejection_options.z(1)=3;
584
+ all_options.ica_options.rejection_options.measure(2)=1;
585
+ all_options.ica_options.rejection_options.z(2)=3;
586
+ all_options.ica_options.rejection_options.measure(3)=1;
587
+ all_options.ica_options.rejection_options.z(3)=3;
588
+ all_options.ica_options.rejection_options.measure(4)=1;
589
+ all_options.ica_options.rejection_options.z(4)=3;
590
+ all_options.ica_options.rejection_options.measure(5)=1;
591
+ all_options.ica_options.rejection_options.z(5)=3;
592
+ all_options.ica_options.EOG_channels=129:132;
593
+ all_options.ica_options.lopass_freq=[];
594
+
595
+ all_options.epoch_interp_options.epoch_interpolation_on=1;
596
+ all_options.epoch_interp_options.rejection_options=struct;
597
+ all_options.epoch_interp_options.rejection_options.measure(1)=1;
598
+ all_options.epoch_interp_options.rejection_options.z(1)=3;
599
+ all_options.epoch_interp_options.rejection_options.measure(2)=1;
600
+ all_options.epoch_interp_options.rejection_options.z(2)=3;
601
+ all_options.epoch_interp_options.rejection_options.measure(3)=1;
602
+ all_options.epoch_interp_options.rejection_options.z(3)=3;
603
+ all_options.epoch_interp_options.rejection_options.measure(4)=1;
604
+ all_options.epoch_interp_options.rejection_options.z(4)=3;
605
+
606
+ all_options.averaging_options.make_GA=0;
607
+ all_options.averaging_options.GA_markers=[];
608
+ all_options.averaging_options.GA_epoch_length=[-0.2 0.8];
609
+ all_options.averaging_options.GA_trimmed_mean=0;
610
+ all_options.averaging_options.GA_trimmed_mean_perc=10;
611
+ all_options.averaging_options.subject_removal_on=1;
612
+ all_options.averaging_options.rejection_options=struct;
613
+ all_options.averaging_options.rejection_options.measure(1)=1;
614
+ all_options.averaging_options.rejection_options.z(1)=3;
615
+ all_options.averaging_options.rejection_options.measure(2)=1;
616
+ all_options.averaging_options.rejection_options.z(2)=3;
617
+ all_options.averaging_options.rejection_options.measure(3)=1;
618
+ all_options.averaging_options.rejection_options.z(3)=3;
619
+ all_options.averaging_options.rejection_options.measure(4)=1;
620
+ all_options.averaging_options.rejection_options.z(4)=3;
621
+
622
+ if (exist('def_options','var'))
623
+ names=fieldnames(all_options);
624
+ for v=1:length(names)
625
+ if ~isfield(def_options,names{v})
626
+ def_options.(names{v})=all_options.(names{v});
627
+ elseif isstruct(all_options.(names{v}))
628
+ names_2 = fieldnames(all_options.(names{v}));
629
+ for t=1:length(names_2)
630
+ if ~isfield(def_options.(names{v}),names_2{t})
631
+ def_options.(names{v}).(names_2{t})=all_options.(names{v}).(names_2{t});
632
+ elseif isstruct(all_options.(names{v}).(names_2{t})) % Max three levels of structs
633
+ names_3 = fieldnames(all_options.(names{v}).(names_2{t}));
634
+ for r=1:length(names_3)
635
+ if ~isfield(def_options.(names{v}).(names_2{t}),names_3{r}) || ~all(size(def_options.(names{v}).(names_2{t}).(names_3{r}))==size(all_options.(names{v}).(names_2{t}).(names_3{r})))
636
+ def_options.(names{v}).(names_2{t}).(names_3{r})=all_options.(names{v}).(names_2{t}).(names_3{r});
637
+ end
638
+ end
639
+ end
640
+ end
641
+ end
642
+ end
643
+
644
+ std_options=all_options;
645
+ all_options=def_options;
646
+ else
647
+ std_options=all_options;
648
+ end
649
+ end
650
+
651
+ end