% FASTER GUI v1.2.1b - see manual for help. function varargout=FASTER_GUI(varargin) % Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity % College Dublin, % Ireland % nolanhu@tcd.ie, robert.whelan@tcd.ie % % This program is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % This program is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License for more details. % % You should have received a copy of the GNU General Public License % along with this program; if not, write to the Free Software % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA % Options file format: % option_wrapper (top level struct) % option_wrapper.job_name - filename where the options file is stored % option_wrapper. % option_wrapper.current_group - current group of options displayed % (modified by clicking e.g. "Filter Options" button) % option_wrapper.last_value - last option number in the option group % clicked (used for double-click window open functionality) FASTER_version='1.2.2b'; if nargout==1 from_EEGLAB=1; else from_EEGLAB=0; end set(0,'Units','pixels'); screensize = get(0,'ScreenSize'); screensize = screensize(1,[3 4]); %The normal window works down to 800*600, it's pretty unlikely anyone with a smaller res %display will be running this script anyway figurepos = [(screensize(1)-720)/2 (screensize(2)-450)/2 720 450]; figurepos = round(figurepos); bgcolor = [0.9 0.9 0.9]; if (from_EEGLAB) %bgcolor = [1 0.1 0.3]; bgcolor=get(findobj('-regexp','Name','EEGLAB'),'Color'); end %%%%%%%%%%%%%%%%%%%%%%% %%%%% MAIN WINDOW %%%%% %%%%%%%%%%%%%%%%%%%%%%% fh = figure; set(fh,'DockControls','off','Visible','on','Position',figurepos,'MenuBar','none','Toolbar','none','Color',bgcolor,'Resize','off','Name','FASTER EEG Processing v1.2.1b','NumberTitle','off','NextPlot','new'); set(fh,'Units','Normalized'); set(0,'Units','normalized'); all_options=struct; mainpanel=uipanel('Parent',fh,'Units','Normalized','Position',[0 0 1 1],'BackgroundColor',bgcolor); optpanel=uipanel('Parent',mainpanel); option_box=uicontrol('Parent',optpanel,'Tag','option_box'); init_options(); bGO = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Run Job','FontSize',24,'FontWeight','bold','Units','Normalized','Position',[0.51 0.01 0.48 0.25],'Callback',{@FASTER_callbacks,'run_FASTER',option_box},'Interruptible','off','BusyAction','cancel'); lHeading = uicontrol('Parent',mainpanel,'Style','text','String','Setup', 'FontSize',24,'Units','Normalized','Position',[0.51 0.88 0.49 0.12],'BackgroundColor',bgcolor); bFolder = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Job directory:', 'FontSize',14,'Units','Normalized','Position',[0.51 0.8275 0.18 0.07],'BackgroundColor',bgcolor); tbFolder = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.8275 0.28 0.07],'UserData','file_options.folder_name'); bOFolder = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Output directory:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.75 0.18 0.07],'BackgroundColor',bgcolor); tbOFolder = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.75 0.28 0.07],'UserData','file_options.output_folder_name'); bChanLocs = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Channel locations:', 'FontSize',11,'Units','Normalized','Position',[0.51 0.6725 0.18 0.07],'BackgroundColor',bgcolor); tbChanLocs = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.6725 0.28 0.07],'UserData','file_options.channel_locations','FontSize',12); set(tbFolder,'Callback',{@FASTER_callbacks,'update_value',option_box}); set(tbOFolder,'Callback',{@FASTER_callbacks,'update_value',option_box}); set(tbChanLocs,'Callback',{@FASTER_callbacks,'update_value',option_box}); set(bFolder,'Callback',{@FASTER_callbacks,'folderselect',tbFolder,'Select job folder',option_box}); set(bOFolder,'Callback',{@FASTER_callbacks,'folderselect',tbOFolder,'Select output folder',option_box}); set(bChanLocs,'Callback',{@FASTER_callbacks,'fileselect',tbChanLocs,'Select channel location file',option_box}); lFileType = uicontrol('Parent',mainpanel,'Style','text','String','File type:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.575 0.18 0.08],'BackgroundColor',bgcolor); ddFileType = uicontrol('Parent',mainpanel,'Style','popupmenu','String',{'BDF file (Biosemi)','SET file (EEGLAB)'},'FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.585 0.28 0.08],'UserData','file_options.is_bdf','FontSize',12,'Callback',{@FASTER_callbacks,'update_value',option_box}); lSearchString = uicontrol('Parent',mainpanel,'Style','text','String','File filter:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.5275 0.18 0.06],'BackgroundColor',bgcolor); tbSearchString = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',14,'HorizontalAlign','center','Units','Normalized','Position',[0.70 0.5375 0.28 0.06],'UserData','file_options.searchstring'); set(tbSearchString,'Callback',{@FASTER_callbacks,'update_value',option_box}); lPrefix = uicontrol('Parent',mainpanel,'Style','text','String','Output file prefix:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.46 0.18 0.06],'BackgroundColor',bgcolor); tbPrefix = uicontrol('Parent',mainpanel,'Style','edit','String','','FontSize',12,'HorizontalAlign','center','Units','Normalized','Position',[0.7 0.47 0.28 0.06],'UserData','file_options.file_prefix'); set(tbPrefix,'Callback',{@FASTER_callbacks,'update_value',option_box}); if (~from_EEGLAB) lSubdirs = uicontrol('Parent',mainpanel,'Style','text','String','Individual folders:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.40 0.18 0.06],'BackgroundColor',bgcolor); cbSubdirs = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.4075 0.15 0.06],'UserData','file_options.make_subdirectories','BackgroundColor',bgcolor); set(cbSubdirs,'Callback',{@FASTER_callbacks,'update_value',option_box}); lResume = uicontrol('Parent',mainpanel,'Style','text','String','Resume:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.345 0.18 0.06],'BackgroundColor',bgcolor); cbResume = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.3525 0.15 0.06],'UserData','file_options.resume','BackgroundColor',bgcolor); set(cbResume,'Callback',{@FASTER_callbacks,'update_value',option_box}); lResume_num = uicontrol('Parent',mainpanel,'Style','text','String','','HorizontalAlign','right', 'FontSize',12,'Units','Normalized','Position',[0.93 0.345 0.05 0.06],'BackgroundColor',bgcolor,'UserData','file_options.current_file_num'); other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSubdirs cbResume lResume_num bFolder]; else set([bFolder,tbFolder,lFileType,ddFileType],'Enable','off'); set(lSearchString,'String','Setname filter:'); lSaveEEG = uicontrol('Parent',mainpanel,'Style','text','String','Save datasets:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.40 0.18 0.06],'BackgroundColor',bgcolor); cbSaveEEG = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.4075 0.15 0.06],'UserData','file_options.save_ALLEEG','BackgroundColor',bgcolor); set(cbSaveEEG,'Callback',{@FASTER_callbacks,'update_value',option_box}); lOverwrite = uicontrol('Parent',mainpanel,'Style','text','String','Overwrite datasets:', 'FontSize',12,'Units','Normalized','Position',[0.51 0.345 0.18 0.06],'BackgroundColor',bgcolor); cbOverwrite = uicontrol('Parent',mainpanel,'Style','checkbox','String','','FontSize',14,'Units','Normalized','Position',[0.83 0.3525 0.15 0.06],'UserData','file_options.overwrite_ALLEEG','BackgroundColor',bgcolor); % set(cbResume,'Callback',{@FASTER_callbacks,'update_value',option_box}); % other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSaveEEG cbResume bFolder]; other_handles=[tbFolder tbOFolder tbChanLocs ddFileType tbSearchString tbPrefix cbSaveEEG bFolder]; end bSave = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Save job','FontSize',14,'Units','Normalized','Position',[0.51 0.265 0.235 0.09],'Callback',{@FASTER_callbacks,'save_job',option_box}); bLoad = uicontrol('Parent',mainpanel,'Style','pushbutton','String','Load job','FontSize',14,'Units','Normalized','Position',[0.755 0.265 0.235 0.09],'Callback',{@FASTER_callbacks,'open_job',option_box,std_options}); % Options panel set(optpanel,'Parent',mainpanel,'Units','Normalized','Position',[0.01 0.01 0.49 0.98],'BackgroundColor',bgcolor); uicontrol('Parent',optpanel,'FontSize',20,'Style','text','String','Options','Units','Normalized','Position',[0.3 0.9 0.4 0.1],'BackgroundColor',bgcolor); y=0.03; x=0.05; h=0.35; w=0.9; set(option_box,'Parent',optpanel,'Style','listbox','String','','Units','Normalized','Position',[x y w h]); uicontrol('Parent',optpanel,'FontSize',12,'Style','text','String','Function','Units','Normalized','Position',[0.1 0.82 0.5 0.05],'BackgroundColor',bgcolor); uicontrol('Parent',optpanel,'FontSize',12,'Style','text','String','Save','Units','Normalized','Position',[0.72 0.82 0.12 0.05],'BackgroundColor',bgcolor); % Set of options and corresponding window functions for each function group list_filter={'High pass on','High pass frequency','High pass options','Low pass on','Low pass frequency','Low pass options','Notch on','Notch frequency','Notch options','Resample'}; list_channels={'Reference channel','EEG channels','External channels','Known bad channels','Interpolate after ICA','Channel rejection','Rejection options'}; list_epoch={'Markered epoching','Unmarkered epoching','Epoch limits','Baseline subtraction','Epoch rejection','Rejection options'}; list_ICA={'Run ICA','Channels for ICA','ICA k value','Keep existing ICA weights','Save component topographies as images','ICA component rejection','Rejection options'}; list_epoch_interp={'Epoch interpolation','Rejection options'}; list_GA={'Make grand average','Grand average markers','Grand average length','Trimmed mean','Subject removal','Rejection options'}; set(option_box,'String',list_filter); %Set to display the filter settings initially x1=0.1; x2=0.71; x3=0.76; y=0.75; filter_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Filter','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_filter,1},'UserData',[0 1]); filter_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',1,option_box}); y=y-0.07; channels_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Channels','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_channels,2}); channels_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',2,option_box}); y=y-0.07; epoch_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Epoching','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_epoch,3}); epoch_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',3,option_box}); y=y-0.07; ICA_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','ICA','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_ICA,4}); ICA_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',4,option_box}); y=y-0.07; epoch_interp_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Epoch Interpolation','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_epoch_interp,5}); epoch_interp_save = uicontrol('Parent',optpanel,'Style','checkbox','Value',1,'Units','Normalized','Position',[x3 y 0.05 0.05],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'set_save_options',5,option_box}); y=y-0.07; GA_button = uicontrol('Parent',optpanel,'FontSize',14,'Style','pushbutton','String','Grand Average','Value',1,'Units','Normalized','Position',[x1 y 0.5 0.055],'BackgroundColor',bgcolor,'Callback',{@FASTER_callbacks,'changelist',option_box,list_GA,6}); save_handles=[filter_save channels_save epoch_save ICA_save epoch_interp_save]; for s=1:5 set(save_handles(s),'Value',all_options.save_options(s)); end settings_list={'Style','String','FontSize','UserData'}; windows_filter={ { {'text','High pass on',14,0},{'checkbox','',14,'filter_options.hpf_on'},... }, { {'text','High pass frequency',14,0},{'edit','',14,'filter_options.hpf_freq'},... }, { {'text','HP ripple (dB)',12,0},{'edit','0.01',14,'filter_options.hpf_ripple'},{'text','HP attenuation (dB)',12,0},{'edit','80',14,'filter_options.hpf_attenuation'},{'text','HP transition band width (Hz)',10,0},{'edit','1',14,'filter_options.hpf_bandwidth'},... }, { {'text','Low pass on',14,0},{'checkbox','',14,'filter_options.lpf_on'},... }, { {'text','Low pass frequency',14,0},{'edit','',14,'filter_options.lpf_freq'},... }, { {'text','LP ripple (dB)',12,0},{'edit','0.01',14,'filter_options.lpf_ripple'},{'text','LP attenuation (dB)',12,0},{'edit','80',14,'filter_options.lpf_attenuation'},{'text','LP transition band width (Hz)',10,0},{'edit','1',14,'filter_options.lpf_bandwidth'},... }, { {'text','Notch on',14,0},{'checkbox','',14,'filter_options.notch_on'},... }, { {'text','Notch frequency',14,0},{'edit','',14,'filter_options.notch_freq'},... }, { {'text','Notch bandwidth (dB)',12,0},{'edit','0.01',14,'filter_options.notch_bandwidth1'},{'text','Notch ripple (dB)',12,0},{'edit','0.01',14,'filter_options.notch_ripple'},{'text','Notch attenuation (dB)',12,0},{'edit','80',14,'filter_options.notch_attenuation'},{'text','Notch transition band width (Hz)',10,0},{'edit','1',14,'filter_options.notch_bandwidth2'},... }, { {'text','Resample on',14,0},{'checkbox','',14,'filter_options.resample_on'},{'text','Resample frequency (Hz)',12,0},{'edit','512',14,'filter_options.resample_freq'},... }, }; windows_channels={ { {'text','Reference chan for processing',10,0},{'edit','',14,'channel_options.ref_chan'},{'text','Output reference channel',12,0},{'edit','',14,'channel_options.op_ref_chan'},... } { {'text','EEG channels',14,0},{'edit','',14,'channel_options.eeg_chans'},... } { {'text','External channels',14,0},{'edit','',14,'channel_options.ext_chans'},... } { {'text','Known bad channels',14,0},{'edit','',14,'channel_options.bad_channels'},... } { {'text','Interpolate after ICA',14,0},{'checkbox','',14,'channel_options.interp_after_ica'},... } { {'text','Run channel rejection',14,0},{'checkbox','',14,'channel_options.channel_rejection_on'},... } { {'text','Channel correlation',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(1)'},{'text','Channel variance',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(2)'},{'text','Hurst exponent',14,0},{'checkbox','',14,'channel_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'channel_options.rejection_options.z(3)'},{'text','Exclude EOG channels',12,0},{'checkbox','',14,'channel_options.exclude_EOG_chans'},... }, }; windows_epochs={ { {'text','Markered epoching',12,0},{'checkbox','',14,'epoch_options.markered_epoch'},{'text','Markers for epoching',14,0},{'edit','',14,'epoch_options.epoch_markers'},... }, { {'text','Unmarkered epoching',12,0},{'checkbox','',14,'epoch_options.unmarkered_epoch'},{'text','Epoching interval',12,0},{'edit','',14,'epoch_options.unmarkered_epoch_interval'},... }, { {'text','Epoch limits',14,0},{'edit','',14,'epoch_options.epoch_limits'},... }, { {'text','Baseline subtraction',14,0},{'edit','',14,'epoch_options.baseline_sub'},... }, { {'text','Epoch rejection',14,0},{'checkbox','',14,'epoch_options.epoch_rejection_on'},... }, { {'text','Deviation from mean',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'epoch_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_options.rejection_options.z(3)'},... }, }; windows_ICA={ { {'text','Run ICA',14,0},{'checkbox','',14,'ica_options.run_ica'},... } { {'text','ICA channels',14,0},{'edit',25,14,'ica_options.ica_channels'},... } { {'text','ICA k value',14,0},{'edit',25,14,'ica_options.k_value'},... } { {'text','Keep existing ICA weights',12,0},{'checkbox','',14,'ica_options.keep_ICA'},... } { {'text','Save component topography images',10,0},{'checkbox','',14,'ica_options.IC_images'},... } { {'text','Reject ICA components',12,0},{'checkbox','',14,'ica_options.component_rejection_on'},... } { {'text','Median gradient',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(1)'},{'text','Spectral slope',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(2)'},{'text','Spatial kurtosis',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(3)'},{'text','Hurst exponent',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(4)'},{'text','EOG correlation',14,0},{'checkbox','',14,'ica_options.rejection_options.measure(5)'},{'text','Z threshold',14,0},{'edit','',14,'ica_options.rejection_options.z(5)'},{'text','EOG channels',14,0},{'edit',129:132,12,'ica_options.EOG_channels'},{'text','Lowpass frequency',12,0},{'edit','',14,'ica_options.lopass_freq'},... } }; windows_epoch_interp={ { {'text','Epoch interpolation',14,0},{'checkbox','',14,'epoch_interp_options.epoch_interpolation_on'},... } { {'text','Median gradient',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(3)'},{'text','Deviation from mean',14,0},{'checkbox','',14,'epoch_interp_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'epoch_interp_options.rejection_options.z(4)'},... } }; windows_GA={ { {'text','Make grand average',14,0},{'checkbox','',14,'averaging_options.make_GA'},... }, { {'text','Grand average markers',12,0},{'edit','',14,'averaging_options.GA_markers'},... }, { {'text','Grand average length',12,0},{'edit','',14,'averaging_options.GA_epoch_length'},... }, { {'text','Use trimmed mean',12,0},{'checkbox','',14,'averaging_options.GA_trimmed_mean'},{'text','Percentage to trim',12,0},{'edit','',14,'averaging_options.GA_trimmed_mean_perc'},... }, { {'text','Subject removal on',12,0},{'checkbox','',14,'averaging_options.subject_removal_on'},... }, { {'text','Deviation from mean',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(1)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(1)'},{'text','Variance',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(2)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(2)'},{'text','Amplitude range',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(3)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(3)'},{'text','Max EOG value',14,0},{'checkbox','',14,'averaging_options.rejection_options.measure(4)'},{'text','Z threshold',14,0},{'edit','',14,'averaging_options.rejection_options.z(4)'},... }, }; all_windows = {windows_filter, windows_channels, windows_epochs, windows_ICA, windows_epoch_interp, windows_GA}; if (from_EEGLAB) all_options.file_options.using_ALLEEG=1; end option_wrapper=struct; option_wrapper.options=all_options; option_wrapper.current_group=1; option_wrapper.last_value=1; option_wrapper.window_handles=all_windows; option_wrapper.save_handles=save_handles; option_wrapper.other_handles=other_handles; option_wrapper.version=FASTER_version; option_wrapper.debug=1; set(option_box,'Callback',{@FASTER_callbacks,'pop_up',@make_window},'UserData',option_wrapper); set(fh,'CloseRequestFcn',{@FASTER_callbacks,'main_window_close',option_box}); hmenu = uimenu('Label','More Options'); uimenu(hmenu,'Label','Save as default options','Callback',{@FASTER_callbacks,'save_defaults',option_box}); uimenu(hmenu,'Label','Load default option','Callback',{@FASTER_callbacks,'get_defaults',option_box,from_EEGLAB}); uimenu(hmenu,'Label','Save as new job file','Callback',{@FASTER_callbacks,'save_new_job',option_box}); FASTER_callbacks([],[],'update_controls',option_box); if nargout==1 varargout{1}=evalin('base','EEG;'); end %%%%%%%%%%%%%%%%%%%%%%%%%% %%%%% OPTIONS WINDOW %%%%% %%%%%%%%%%%%%%%%%%%%%%%%%% function nf=make_window(controls2,src) controls1={'Style','String','FontSize','UserData'}; nf = figure; N=length(controls2); w=400; h=40 * (N/2) + 40; set(nf,'Units','Pixels','Position',[(screensize(1)-w)/2 (screensize(2)-h)/2 w h],'Color',bgcolor,'WindowStyle','modal'); hcontrols=zeros(size(controls2)); for u=1:N hcontrols(u)=uicontrol('Parent',nf); set(hcontrols(u),controls1,controls2{u}); %set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor); x = (mod(u-1,2)*200); y = (20*N)-40*(round(u/2))+40; set(hcontrols(u),'Position',[x y 200 40]+get_offset(get(hcontrols(u),'Style'))); option_wrapper=get(src,'UserData'); subgroup=get(hcontrols(u),'UserData'); if ischar(subgroup) if (strcmpi(get(hcontrols(u),'Style'),'edit')) set(hcontrols(u),'Units','Pixels','BackgroundColor',[1 1 1]); r=e('option_wrapper.options',subgroup); if (~ischar(r) && ~iscell(r)) if (any(mod(r,1))) s=sprintf('%.2f ', r); if (~isempty(s) && s(end)==' ') s=s(1:end-1); end set(hcontrols(u),'String',s); else if (~isempty(r) && all(diff(r)==1) && length(r)>1) set(hcontrols(u),'String',sprintf('%d:%d', r(1),r(end))); else s=sprintf('%d ',r); if (~isempty(s) && s(end)==' ') s=s(1:end-1); end set(hcontrols(u),'String',s); end end elseif iscell(r) s='{'; for c=1:length(r) if ischar(r{c}) s=[s '''' r{c} ''', ']; else if (any(mod(r{c},1))) s1=sprintf('%.2f ', r{c}); if (~isempty(s1) && s1(end)==' ') s1=s1(1:end-1); end else if (~isempty(r{c}) && all(diff(r{c})==1) && length(r{c})>1) s1=sprintf('%d:%d', r{c}(1),r{c}(end)); else s1=sprintf('%d ',r{c}); if (~isempty(s1) && s1(end)==' ') s1=s1(1:end-1); end end end s=[s '[' s1 '], ']; end end if (~isempty(s) && s(end)==' ') if (s(end-1)==',') s=s(1:end-2); else s=s(1:end-1); end end s=[s '}']; set(hcontrols(u),'String',s); else set(hcontrols(u),'String',e('option_wrapper.options',subgroup)); end else set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor); set(hcontrols(u),'Value',e('option_wrapper.options',subgroup)); end else set(hcontrols(u),'Units','Pixels','BackgroundColor',bgcolor); set(hcontrols(u),'Value',0); end set(hcontrols(u),'Callback',{@FASTER_callbacks,'set_window_value',src}); end uicontrol('style','pushbutton','Units','Pixels','BackgroundColor',bgcolor,'Position',[175 10 50 20],'String','OK','Callback',{@FASTER_callbacks,'option_window_close',src,hcontrols,nf},'FontSize',12); set(nf,'CloseRequestFcn',{@FASTER_callbacks,'do_nothing'}); end function out=get_offset(uicontrol_type) % Lines up text correctly switch (uicontrol_type) case 'text' out=[0 -2 0 -8]; case 'checkbox' out=[80 2 0 0]; case 'edit' out=[0 4 -2 -4]; otherwise out=[0 0 0 0]; end out = out + [0 -5 0 0]; end function out=e(part1,part2) out=eval(sprintf('%s.%s',part1,part2)); end function init_options() % Provides the default options. if (exist('FASTER_defaults.mat','file')) def_options=FASTER_callbacks([],[],'get_defaults',option_box,from_EEGLAB); end all_options.job_filename=''; all_options.current_file=[]; all_options.current_file_num=1; all_options.is_processing=0; all_options.save_options=ones(1,5); all_options.file_options.folder_name=''; all_options.file_options.output_folder_name=''; all_options.file_options.current_file=''; all_options.file_options.current_file_num=1; all_options.file_options.channel_locations=''; all_options.file_options.searchstring=''; all_options.file_options.cutoff_markers=[]; all_options.file_options.is_bdf=1; all_options.file_options.resume=0; all_options.file_options.file_prefix=''; all_options.file_options.plist=cell(0); all_options.file_options.oplist=cell(0); all_options.file_options.nlist=cell(0); all_options.file_options.using_ALLEEG=0; all_options.file_options.make_subdirectories=1; all_options.file_options.save_ALLEEG=1; all_options.file_options.folder_name_rel=cell(0); all_options.file_options.overwrite_ALLEEG=0; all_options.filter_options.hpf_on=1; all_options.filter_options.hpf_freq=1; all_options.filter_options.hpf_ripple=0.05; all_options.filter_options.hpf_attenuation=80; all_options.filter_options.hpf_bandwidth=0.5; all_options.filter_options.lpf_on=1; all_options.filter_options.lpf_freq=95; all_options.filter_options.lpf_ripple=0.01; all_options.filter_options.lpf_attenuation=40; all_options.filter_options.lpf_bandwidth=2.5; all_options.filter_options.notch_on=1; all_options.filter_options.notch_freq=50; all_options.filter_options.notch_bandwidth1=3; all_options.filter_options.notch_ripple=0.05; all_options.filter_options.notch_attenuation=80; all_options.filter_options.notch_bandwidth2=1; all_options.filter_options.resample_on=0; all_options.filter_options.resample_freq=0; all_options.channel_options.do_reref=1; all_options.channel_options.ref_chan=85; all_options.channel_options.op_ref_chan=[]; all_options.channel_options.eeg_chans=1:128; all_options.channel_options.ext_chans=129:136; all_options.channel_options.bad_channels=[]; all_options.channel_options.interp_after_ica=1; all_options.channel_options.channel_rejection_on=1; all_options.channel_options.rejection_options=struct; all_options.channel_options.rejection_options.measure(1)=1; all_options.channel_options.rejection_options.z(1)=3; all_options.channel_options.rejection_options.measure(2)=1; all_options.channel_options.rejection_options.z(2)=3; all_options.channel_options.rejection_options.measure(3)=1; all_options.channel_options.rejection_options.z(3)=3; all_options.channel_options.exclude_EOG_chans=1; all_options.epoch_options.markered_epoch=1; all_options.epoch_options.epoch_markers=[]; all_options.epoch_options.epoch_limits=[-0.2 0.8]; all_options.epoch_options.baseline_sub=[-0.1 0]; all_options.epoch_options.unmarkered_epoch=0; all_options.epoch_options.unmarkered_epoch_interval=1; all_options.epoch_options.epoch_rejection_on=1; all_options.epoch_options.rejection_options=struct; all_options.epoch_options.rejection_options.measure(1)=1; all_options.epoch_options.rejection_options.z(1)=3; all_options.epoch_options.rejection_options.measure(2)=1; all_options.epoch_options.rejection_options.z(2)=3; all_options.epoch_options.rejection_options.measure(3)=1; all_options.epoch_options.rejection_options.z(3)=3; all_options.ica_options.run_ica=1; all_options.ica_options.k_value=25; all_options.ica_options.ica_channels=1:136; all_options.ica_options.keep_ICA=0; all_options.ica_options.IC_images=0; all_options.ica_options.component_rejection_on=1; all_options.ica_options.rejection_options=struct; all_options.ica_options.rejection_options.measure(1)=1; all_options.ica_options.rejection_options.z(1)=3; all_options.ica_options.rejection_options.measure(2)=1; all_options.ica_options.rejection_options.z(2)=3; all_options.ica_options.rejection_options.measure(3)=1; all_options.ica_options.rejection_options.z(3)=3; all_options.ica_options.rejection_options.measure(4)=1; all_options.ica_options.rejection_options.z(4)=3; all_options.ica_options.rejection_options.measure(5)=1; all_options.ica_options.rejection_options.z(5)=3; all_options.ica_options.EOG_channels=129:132; all_options.ica_options.lopass_freq=[]; all_options.epoch_interp_options.epoch_interpolation_on=1; all_options.epoch_interp_options.rejection_options=struct; all_options.epoch_interp_options.rejection_options.measure(1)=1; all_options.epoch_interp_options.rejection_options.z(1)=3; all_options.epoch_interp_options.rejection_options.measure(2)=1; all_options.epoch_interp_options.rejection_options.z(2)=3; all_options.epoch_interp_options.rejection_options.measure(3)=1; all_options.epoch_interp_options.rejection_options.z(3)=3; all_options.epoch_interp_options.rejection_options.measure(4)=1; all_options.epoch_interp_options.rejection_options.z(4)=3; all_options.averaging_options.make_GA=0; all_options.averaging_options.GA_markers=[]; all_options.averaging_options.GA_epoch_length=[-0.2 0.8]; all_options.averaging_options.GA_trimmed_mean=0; all_options.averaging_options.GA_trimmed_mean_perc=10; all_options.averaging_options.subject_removal_on=1; all_options.averaging_options.rejection_options=struct; all_options.averaging_options.rejection_options.measure(1)=1; all_options.averaging_options.rejection_options.z(1)=3; all_options.averaging_options.rejection_options.measure(2)=1; all_options.averaging_options.rejection_options.z(2)=3; all_options.averaging_options.rejection_options.measure(3)=1; all_options.averaging_options.rejection_options.z(3)=3; all_options.averaging_options.rejection_options.measure(4)=1; all_options.averaging_options.rejection_options.z(4)=3; if (exist('def_options','var')) names=fieldnames(all_options); for v=1:length(names) if ~isfield(def_options,names{v}) def_options.(names{v})=all_options.(names{v}); elseif isstruct(all_options.(names{v})) names_2 = fieldnames(all_options.(names{v})); for t=1:length(names_2) if ~isfield(def_options.(names{v}),names_2{t}) def_options.(names{v}).(names_2{t})=all_options.(names{v}).(names_2{t}); elseif isstruct(all_options.(names{v}).(names_2{t})) % Max three levels of structs names_3 = fieldnames(all_options.(names{v}).(names_2{t})); for r=1:length(names_3) if ~isfield(def_options.(names{v}).(names_2{t}),names_3{r}) || ~all(size(def_options.(names{v}).(names_2{t}).(names_3{r}))==size(all_options.(names{v}).(names_2{t}).(names_3{r}))) def_options.(names{v}).(names_2{t}).(names_3{r})=all_options.(names{v}).(names_2{t}).(names_3{r}); end end end end end end std_options=all_options; all_options=def_options; else std_options=all_options; end end end