% eegplotgold() - display EEG data in a clinical format % % Usage: % >> eegplotgold('dataname', samplerate, 'chanfile', 'title', yscaling, range) % % Inputs: % 'dataname' - quoted name of a desktop global variable (see Ex. below) % samplerate - EEG sampling rate in Hz (0 -> default 256 Hz) % 'chanfile' - file of channel info in topoplot() style % (0 -> channel numbers) % 'title' - plot title string (0 -> 'eegplotgold()') % yscaling - initial y scaling factor (0 - default is 300) % range - how many seconds to display in window (0 -> 10) % % Note: this version of eegplotgold() reguires that your data matrix % be defined as a global variable before running this routine. % % Example: >> global dataname % >> eegplotgold('dataname') % % Author: Colin Humphries, CNL, Salk Institute, La Jolla, 3/97 % % See also: eegplot(), eegplotold(), eegplotsold() % Copyright (C) Colin Humphries, CNL, Salk Institute 3/97 from eegplotold() % % This program is free software; you can redistribute it and/or modify % it under the terms of the GNU General Public License as published by % the Free Software Foundation; either version 2 of the License, or % (at your option) any later version. % % This program is distributed in the hope that it will be useful, % but WITHOUT ANY WARRANTY; without even the implied warranty of % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % GNU General Public License for more details. % % You should have received a copy of the GNU General Public License % along with this program; if not, write to the Free Software % Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA % 4-4-97 shortened name to eegplotgold() -sm % 5-20-97 added read of icadefs.m for MAXEEGPLOTCHANS -sm % 8-10-97 Clarified chanfile type -sm % 01-25-02 reformated help & license, added links -ad %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function y = eegplotold(dataname, samplerate, channamefile, titleval, yscaling, range) eval (['global ',dataname]) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Define defaults %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% icadefs; % set initial spacing eval(['DEFAULT_SPACING = max(max(',dataname,''')-min(',dataname,'''));']) % spacing_var/20 = microvolts/millimeter with 21 channels % for n channels: 21/n * spacing_var/20 = microvolts/mm % for clinical data. DEFAULT_SAMPLERATE = 256; % default rate in Hz. DEFAULT_PLOTTIME = 10; % default 10 second window DEFAULT_TITLE = 'eegplotgold()'; errorcode=0; % initialize error indicator %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Allow for different numbers of arguments %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% if nargin < 6 PLOT_TIME = DEFAULT_PLOTTIME; else PLOT_TIME = range; end if nargin < 5 spacing_var = DEFAULT_SPACING; else spacing_var = yscaling; end if spacing_var == 0 spacing_var = DEFAULT_SPACING; end if nargin < 4 titleval = DEFAULT_TITLE; end if titleval == 0 titleval = DEFAULT_TITLE; end if nargin < 3 channamefile = 0; end if nargin < 2 samplerate = DEFAULT_SAMPLERATE; end if samplerate == 0, samplerate = DEFAULT_SAMPLERATE; end; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Define internal variables %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% SAMPLE_RATE = samplerate; time = 0; eval(['[chans,frames] = size(',dataname,');']) %size of data matrix maxtime = frames / samplerate; %size of matrix in seconds %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Read the channel names %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% if channamefile ~=0, % read file of channel names chid = fopen(channamefile,'r'); if chid <3, fprintf('plotdata: cannot open file %s.\n',channamefile); errorcode=2; channamefile = 0; else fprintf('Chan info file %s opened\n',channamefile); end; icadefs; % read MAXEEGPLOTCHANS from icadefs.m if errorcode==0, channames = fscanf(chid,'%s',[6 MAXEEGPLOTCHANS]); channames = channames'; [r c] = size(channames); for i=1:r for j=1:c if channames(i,j)=='.', channames(i,j)=' '; end; end; end; % fprintf('%d channel names read from file.\n',r); if (r>chans) fprintf('Using first %d names.\n',chans); channames = channames(1:chans,:); end; if (r= 8.04 set(gcf,'Name',['EEGPLOTOLD #',num2str(fighandle.Number)]); else set(gcf,'Name',['EEGPLOTOLD #',num2str(gcf)]); end set (gca, 'xgrid', 'on') %Xaxis gridlines only set (gca, 'GridLineStyle','-') %Solid grid lines set (gca, 'XTickLabels', Xlab) %Use Xlab for tick labels set (gca, 'Box', 'on') set (gca, 'XTick', time*samplerate:1.0*samplerate:PLOT_TIME*samplerate) set (gca, 'Ytick', 0:spacing_var:chans*spacing_var) % ytickspacing on channels set (gca, 'TickLength', [0.001 0.001]) title(titleval) % title is titleval axis([0 PLOT_TIME*samplerate 0 (chans+1)*spacing_var]); % set axis values set (gca, 'YTickLabels', flipud(channames)) % write channel names %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Plot the selected EEG data epoch %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% for i = 1:chans if (maxtime-time>PLOT_TIME) eval(['F = ',dataname,'(chans-i+1,(time*samplerate)+1:(time+PLOT_TIME*samplerate));']) else eval(['F = ',dataname,'(chans-i+1,(time*samplerate)+1:(maxtime*samplerate));']) end F = F - mean(F) + i*spacing_var; plot (F,'clipping','off') end %%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Plot Scaling I %%%%%%%%%%%%%%%%%%%%%%%%%%%%% line([(PLOT_TIME+.3)*samplerate,(PLOT_TIME+.3)*samplerate],[1.5*spacing_var 2.5*spacing_var],'clipping','off','color','w') line([(PLOT_TIME+.3)*samplerate-10,(PLOT_TIME+.3)*samplerate+10],[2.5*spacing_var,2.5*spacing_var],'clipping','off','color','w') line([(PLOT_TIME+.3)*samplerate-10,(PLOT_TIME+.3)*samplerate+10],[1.5*spacing_var,1.5*spacing_var],'clipping','off','color','w') text((PLOT_TIME+.5)*samplerate,2*spacing_var,num2str(round(spacing_var)),'clipping','off') %%%%%%%%%%%%%%%%%%%%%%%%%%%%% % User Control Routines %%%%%%%%%%%%%%%%%%%%%%%%%%%%% slider_position = [.125 .030 .3 .024]; % position of user-controlled slider edit_position = [.65 .025 .1 .05]; % position of edit box slider_position2 = [.8 .03 .1 .024]; b1_position = [.175 .022 .09 .047]; b2_position = [.29 .022 .09 .047]; b3_position = [.125 .022 .045 .047]; b4_position = [.385 .022 .045 .047]; Max_Space = 1; Min_Space = DEFAULT_SPACING*2; % User_Data_Mat = [data;zeros(1,length(data))]; axhandle = gca; User_Data_Mat(1) = samplerate; User_Data_Mat(2) = PLOT_TIME; User_Data_Mat(3) = spacing_var; User_Data_Mat(4) = time; User_Data_Mat(5) = maxtime; User_Data_Mat(6) = axhandle; User_Data_Mat(7) = 1; % color User_Data_Mat(8) = frames; User_Data_Mat(9) = chans; User_Data_Mat(12) = 1; tstring1 = 'data1973 = get(gcf,''UserData'');'; tstring2 = 'set(gcf,''UserData'',data1973);'; tstring3 = 'eegdrawgv(gcf);'; TIMESTRING = [tstring1,'if (data1973(4)-data1973(2))<0;','data1973(4) = 0;','else;','data1973(4) = data1973(4) - data1973(2);','end;',tstring2,tstring3,'clear data1973']; hb = uicontrol('Style','PushButton','Units','Normalized','position',b1_position,'String','PREV','Callback',TIMESTRING); TIMESTRING = [tstring1,'if (data1973(4)+data1973(2))>=data1973(5);','data1973(4)=data1973(4);','else;','data1973(4) = data1973(4) + data1973(2);','end;',tstring2,tstring3,'clear data1973']; hf = uicontrol('Style','PushButton','Units','Normalized','position',b2_position,'String','NEXT','Callback',TIMESTRING); TIMESTRING = [tstring1,'if (data1973(4)-1)<0;','data1973(4) = 0;','else;','data1973(4) = data1973(4) - 1;','end;',tstring2,tstring3,'clear data1973']; hbos = uicontrol('Style','PushButton','Units','Normalized','position',b3_position,'String','<<','Callback',TIMESTRING); TIMESTRING = [tstring1,'if (data1973(4)+1)>=data1973(5);','data1973(4)=data1973(4);','else;','data1973(4) = data1973(4) + 1;','end;',tstring2,tstring3,'clear data1973']; hfos = uicontrol('Style','PushButton','Units','Normalized','position',b4_position,'String','>>','Callback',TIMESTRING); TIMESTRING = [tstring1,'time1973 = get(gco,''string'');','time1973 = str2num(time1973);','data1973(4) = time1973;',tstring2,tstring3,'clear time1973 data1973']; w=uicontrol('style','edit','units','normalized','HorizontalAlignment','left','position',edit_position,'UserData',axhandle,'callback',TIMESTRING); TIMESTRING = [tstring1,'data1973(3) = get(gco,''value'');',tstring2,tstring3,'clear time1973 data1973']; u=uicontrol('style','slider','units','normalized','position',slider_position2,'Max',Max_Space,'Min',Min_Space,'value',spacing_var,'UserData',axhandle,'callback',TIMESTRING); %%%%%%%%%%%%%%%%%%%%%%%%% %Set up ui menus %%%%%%%%%%%%%%%%%%%%%%%%% %Window menu: TIMESTRING = ['fighand1973 = gcf;','delete(fighand1973);','clear fighand1973;']; fm1 = uimenu('Label','Window'); fm2 = uimenu(fm1,'Label','Close ','UserData',fighandle,'Callback',TIMESTRING); %Display menu: TIMESTRING = [tstring1,'out1973 = gettext(''Input new windowlength(sec).'');','if isempty(out1973);','out1973 = 0;','else;','data1973(2) = str2num(out1973);',tstring2,tstring3,'end;','clear data1973 out1973']; dm1 = uimenu('Label','Display'); dm2 = uimenu(dm1,'Label',' Window Length','Interruptible','on','Callback',TIMESTRING); dm3 = uimenu(dm1,'Label',' Color'); TIMESTRING = [tstring1,'data1973(7) = 1;',tstring2,tstring3,'clear data1973;']; dm4 = uimenu(dm3,'Label','Yellow ','UserData',axhandle,'Interruptible','on','Callback',TIMESTRING); TIMESTRING = [tstring1,'data1973(7) = 2;',tstring2,tstring3,'clear data1973;']; dm5 = uimenu(dm3,'Label','White ','UserData',axhandle,'Interruptible','on','Callback',TIMESTRING); TIMESTRING = ['label1973 = gettext(''Enter new title.'');','if isempty(label1973);','label1973 = 0;','else;','title(label1973);','end;','clear label1973;']; dm6 = uimenu(dm1,'Label','Title ','Interruptible','on','Callback',TIMESTRING); TIMESTRING = [tstring1,'Check1973 = get(data1973(10),''checked'');','if (Check1973(1:2) == ''on'');','set(data1973(10),''Checked'',''off'');','set(data1973(6),''XGrid'',''off'');','else;','set(data1973(10),''Checked'',''on'');','set(data1973(6),''XGrid'',''on'');','end;','clear data1973 Check1973;']; dm7 = uimenu(dm1,'Label','Grid','Checked','on','Callback',TIMESTRING); User_Data_Mat(10) = dm7; TIMESTRING = [tstring1,'Check1973 = get(data1973(11),''checked'');','if (Check1973(1:2) == ''on'');','set(data1973(11),''Checked'',''off'');','data1973(12)= 0;','else;','set(data1973(11),''Checked'',''on'');','data1973(12) = 1;','end;',tstring2,tstring3,'clear data1973 Check1973;']; dm8 = uimenu(dm1,'Label','Scaling I','Checked','on','Callback',TIMESTRING); User_Data_Mat(11) = dm8; %Settings menu: sm1 = uimenu('Label','Settings'); TIMESTRING = [tstring1,'Srate1973 = gettext(''Enter new samplerate'');','if isempty(Srate1973);','Srate1973 = 0;','else;','data1973(1) = str2num(Srate1973);','data1973(5) = data1973(8)/data1973(1);','data1973(4) = 0;',tstring2,tstring3,'end;','clear Srate1973 data1973']; sm2 = uimenu(sm1,'Label','Samplerate','Interruptible','on','Callback',TIMESTRING); %Electrodes menu: em1 = uimenu('Label','Electrodes'); TIMESTRING = [tstring1,'ChanNamefile1973 = gettext(''Enter Electrode file to load.'');','if isempty(ChanNamefile1973);','ChanNamefile1973=0;','else;','ChanNames1973 = loadelec(ChanNamefile1973);','set(data1973(6),''YTickLabels'',flipud(ChanNames1973));','end;','clear data1973 ChanNamefile1973 ChanNames1973']; em2 = uimenu(em1,'Label','Load Electrode File ','Interruptible','on','Callback',TIMESTRING); TIMESTRING = [tstring1,'ChanNames1973 = makeelec(data1973(9));','if isempty(ChanNames1973);','ChanNames1973=0;','else;','set(data1973(6),''YTickLabels'',flipud(ChanNames1973));','end;','clear data1973 ChanNames1973']; em3 = uimenu(em1,'Label','Make Electrode File ','Interruptible','on','Callback',TIMESTRING); set(axhandle,'UserData',dataname) set(fighandle,'UserData',User_Data_Mat)